RCAN1

General Information

Gene Name       : RCAN1
Gene ID             : ENSG00000159200.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RCAN1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RCAN1ENSG00000159200.178.518.328.41ENCSR000AEF
HepG2RCAN1ENSG00000159200.1713.2017.8415.52ENCSR985KAT
K562RCAN1ENSG00000159200.179.6910.039.86ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RCAN1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on RCAN1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for RCAN1 is not avaliable on ENCORE database.






NO known proteins are bound to RCAN1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for RCAN1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RCAN1 is not available on ENCORE database.

  • 106 RBPs can affect the levels of RCAN1.  








The Knockdown/knockout RNA-Seq assay for RCAN1 is not available on ENCORE database.





106 RBPs can affect the gene expression of RCAN1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RCAN1ENSG00000159200.13767.07240540.236700.505703.391002.35250HepG2ABCF1
RCAN1ENSG00000159200.13762.42180486.109200.649209.567508.57620HepG2ACO1
RCAN1ENSG00000159200.13724.56790431.752700.746807.593106.66200HepG2BOP1
RCAN1ENSG00000159200.13529.86110377.841900.487703.575202.71480HepG2CALR
RCAN1ENSG00000159200.13341.20720601.43130-0.817805.021703.69170HepG2CCAR1
RCAN1ENSG00000159200.131701.75480580.985701.5503034.4268032.18920HepG2CIRBP
RCAN1ENSG00000159200.13677.65440449.583100.591906.133804.96150HepG2DDX19B
RCAN1ENSG00000159200.13461.85500355.689500.376702.410401.33070HepG2DDX1
RCAN1ENSG00000159200.13904.81740363.535901.3154022.8557021.16180HepG2DDX21
RCAN1ENSG00000159200.13595.46610355.842900.742707.451505.96370HepG2DDX24
RCAN1ENSG00000159200.13717.50250407.608100.815706.306904.45290HepG2DDX27
RCAN1ENSG00000159200.131423.96770707.998801.0080014.0790012.77550HepG2DDX3X
RCAN1ENSG00000159200.13722.49030449.374800.685006.429904.94580HepG2DDX5
RCAN1ENSG00000159200.13751.05980465.075700.691409.386208.28780HepG2DKC1
RCAN1ENSG00000159200.13450.66580313.203100.524902.819501.89020HepG2EEF2
RCAN1ENSG00000159200.13915.44830584.666300.646805.696704.86360HepG2EIF2S1
RCAN1ENSG00000159200.13288.93780409.90130-0.504502.659201.51560HepG2EIF2S2
RCAN1ENSG00000159200.13451.63590343.364300.395302.357201.35990HepG2EIF3G
RCAN1ENSG00000159200.131129.67880646.167500.805808.112307.02160HepG2EIF4A3
RCAN1ENSG00000159200.131046.99150629.053600.734905.492204.54550HepG2EIF4B
RCAN1ENSG00000159200.131014.46860775.064100.388203.659702.98400HepG2ETF1
RCAN1ENSG00000159200.13976.25260475.018901.0392012.3771010.65010HepG2EWSR1
RCAN1ENSG00000159200.13779.07250558.329400.480503.123101.36860HepG2FMR1
RCAN1ENSG00000159200.13348.45650226.354000.622303.562502.53360HepG2GEMIN5
RCAN1ENSG00000159200.13632.75060366.992000.785806.539204.95350HepG2GNB2L1
RCAN1ENSG00000159200.13721.40790449.306700.683005.336404.46590HepG2GPKOW
RCAN1ENSG00000159200.13663.72870352.115700.9144010.158209.03640HepG2HNRNPA1
RCAN1ENSG00000159200.13619.29900428.782400.530303.552102.84890HepG2HNRNPLL
RCAN1ENSG00000159200.13918.82380614.722000.579804.869303.99630HepG2IGF2BP2
RCAN1ENSG00000159200.13401.36890618.26030-0.623303.707502.52770HepG2KHSRP
RCAN1ENSG00000159200.13579.82310377.495200.619104.525702.96140HepG2LIN28B
RCAN1ENSG00000159200.131192.32660655.724700.862507.288106.30080HepG2MATR3
RCAN1ENSG00000159200.13635.48210380.204000.741006.611205.48080HepG2NSUN2
RCAN1ENSG00000159200.13597.82790369.973500.692203.512502.50390HepG2PABPC1
RCAN1ENSG00000159200.13900.07980597.814600.590303.826502.98880HepG2PABPC4
RCAN1ENSG00000159200.13270.51340385.11720-0.509603.640202.68210HepG2PARN
RCAN1ENSG00000159200.13537.70920327.772000.714008.214806.97620HepG2PRPF4
RCAN1ENSG00000159200.13655.83030336.061900.964509.500308.10590HepG2PRPF8
RCAN1ENSG00000159200.131029.35410564.927100.8655012.1911011.05830HepG2PUF60
RCAN1ENSG00000159200.13493.22770599.67500-0.281902.319401.76700HepG2PUM1
RCAN1ENSG00000159200.13766.26180599.249500.354602.505801.86720HepG2PUM2
RCAN1ENSG00000159200.13807.33860652.004800.308202.257501.68320HepG2QKI
RCAN1ENSG00000159200.131129.57470408.182301.4684010.231308.93870HepG2RAVER1
RCAN1ENSG00000159200.13452.31220583.62390-0.367702.521001.69950HepG2RBM15
RCAN1ENSG00000159200.131140.93840647.823700.8164015.3596014.33930HepG2RBM22
RCAN1ENSG00000159200.13450.04740591.75290-0.394902.545501.89550HepG2RBM25
RCAN1ENSG00000159200.13861.48280670.020900.362503.360802.77730HepG2NELFE
RCAN1ENSG00000159200.13455.08130624.06450-0.455603.959003.23840HepG2RECQL
RCAN1ENSG00000159200.131236.04660662.326700.9000012.6642011.39180HepG2RPLP0
RCAN1ENSG00000159200.13700.83050399.910700.809307.402706.13380HepG2RPS2
RCAN1ENSG00000159200.13620.06440408.242800.602904.250702.90530HepG2RPS5
RCAN1ENSG00000159200.13545.85260332.435600.715304.899303.88570HepG2RRP9
RCAN1ENSG00000159200.13254.58530346.48760-0.444702.831602.18140HepG2SAFB2
RCAN1ENSG00000159200.13567.89470248.270601.1936013.4563011.47010HepG2SERBP1
RCAN1ENSG00000159200.131325.97980550.164401.2690014.1788012.58570HepG2SF3A3
RCAN1ENSG00000159200.131081.82340424.404801.3499024.7442022.87890HepG2SF3B1
RCAN1ENSG00000159200.13447.65630626.78800-0.485604.365503.64850HepG2SF3B4
RCAN1ENSG00000159200.13590.26520404.064000.546706.223705.31910HepG2SMN1
RCAN1ENSG00000159200.13254.27080396.82760-0.642103.491901.68030HepG2SND1
RCAN1ENSG00000159200.131157.81950731.717000.6620013.1390012.26330HepG2SRFBP1
RCAN1ENSG00000159200.13245.14140414.91760-0.759204.748602.72160HepG2SRP68
RCAN1ENSG00000159200.13861.97280654.246100.397704.031403.48720HepG2SRSF1
RCAN1ENSG00000159200.13676.44300557.759100.278201.863201.33570HepG2SRSF5
RCAN1ENSG00000159200.131116.06730635.345400.8127018.0356016.96960HepG2SSB
RCAN1ENSG00000159200.13213.48980353.55390-0.727804.297102.89420HepG2STIP1
RCAN1ENSG00000159200.13817.35710634.346400.365603.635102.94070HepG2SUCLG1
RCAN1ENSG00000159200.13971.77110450.781301.1081011.863109.13090HepG2SUGP2
RCAN1ENSG00000159200.13587.92130368.458900.674006.506505.10260HepG2SUPT6H
RCAN1ENSG00000159200.131500.05470433.664801.7903034.4264032.56270HepG2SUPV3L1
RCAN1ENSG00000159200.13356.29450588.10380-0.723007.893907.02510HepG2TAF15
RCAN1ENSG00000159200.13712.76830417.953500.770007.663906.53390HepG2TARDBP
RCAN1ENSG00000159200.13573.03260378.061000.599905.500404.84400HepG2TIAL1
RCAN1ENSG00000159200.131115.29580466.727001.2567020.5959018.82470HepG2U2AF1
RCAN1ENSG00000159200.13137.90250256.18090-0.893505.338604.27870HepG2UCHL5
RCAN1ENSG00000159200.13762.82960487.912900.644609.319108.16920HepG2UPF1
RCAN1ENSG00000159200.13738.86920471.058800.649308.306907.35890HepG2UTP3
RCAN1ENSG00000159200.131033.95490536.609000.9461024.6272023.40290HepG2ZNF622
RCAN1ENSG00000159200.13220.23000407.66690-0.888405.670803.73650HepG2ZRANB2
RCAN1ENSG00000159200.13193.67780524.38610-1.4370022.8941021.37490K562AGGF1
RCAN1ENSG00000159200.13367.30390576.19240-0.649605.726204.18660K562AKAP8
RCAN1ENSG00000159200.13196.87140545.64050-1.4707020.6518018.52560K562AKAP8L
RCAN1ENSG00000159200.13269.57240485.48670-0.848803.063002.45200K562AQR
RCAN1ENSG00000159200.13293.71400572.49490-0.9629013.0871010.93510K562ATP5C1
RCAN1ENSG00000159200.13199.40060339.01970-0.765703.304702.12630K562CNOT7
RCAN1ENSG00000159200.13593.47580338.672600.809207.607406.59920K562DDX47
RCAN1ENSG00000159200.13541.89830381.354700.506804.473103.58580K562EIF2S2
RCAN1ENSG00000159200.13320.45550204.590500.647302.619201.84330K562EIF3G
RCAN1ENSG00000159200.13350.59110155.924701.1688011.8209010.65920K562FXR1
RCAN1ENSG00000159200.13197.34080276.75110-0.487902.542801.45240K562GLRX3
RCAN1ENSG00000159200.1376.69320170.58510-1.153304.630502.04640K562HLTF
RCAN1ENSG00000159200.13100.27020174.48550-0.799203.377602.10960K562HNRNPF
RCAN1ENSG00000159200.131231.06830436.222601.4967030.3693028.06830K562HSPD1
RCAN1ENSG00000159200.13265.60530579.08570-1.1245013.0144010.81370K562KIF1C
RCAN1ENSG00000159200.1369.03970172.59340-1.321905.959504.53010K562KRR1
RCAN1ENSG00000159200.13346.07960648.71880-0.9065011.186109.15080K562MBNL1
RCAN1ENSG00000159200.13339.90650565.73740-0.735002.689301.57700K562MSI2
RCAN1ENSG00000159200.13213.59120290.97190-0.446002.349501.60320K562MTPAP
RCAN1ENSG00000159200.13243.10250454.70270-0.903405.934304.46460K562NAA15
RCAN1ENSG00000159200.13215.98730323.27200-0.581804.033903.15070K562NSUN2
RCAN1ENSG00000159200.13185.02260374.75210-1.018202.598801.64650K562PABPN1
RCAN1ENSG00000159200.13120.66750541.17620-2.1651033.0036031.10560K562PUS1
RCAN1ENSG00000159200.13190.14750527.25280-1.4714022.5911020.82540K562RBM15
RCAN1ENSG00000159200.13225.85630125.224000.850803.616102.45360K562RPS3
RCAN1ENSG00000159200.13135.65930342.87070-1.337703.427702.05160K562SF1
RCAN1ENSG00000159200.13241.05870319.02260-0.404302.152501.42540K562SF3A3
RCAN1ENSG00000159200.1391.26310151.50590-0.731302.503001.53860K562SRFBP1
RCAN1ENSG00000159200.13167.18310302.21830-0.854203.119501.37340K562STIP1
RCAN1ENSG00000159200.13295.84020186.904600.662404.178503.16420K562SYNCRIP
RCAN1ENSG00000159200.13240.20470376.44390-0.648203.999702.25240K562TRIP6
RCAN1ENSG00000159200.13105.91790225.98690-1.093302.303401.38280K562UCHL5
RCAN1ENSG00000159200.13246.55440548.64510-1.154006.876604.59950K562UTP18
RCAN1ENSG00000159200.13183.04840267.64720-0.548102.446401.32310K562UTP3
RCAN1ENSG00000159200.13142.36740293.29780-1.042708.438206.86800K562WDR3
RCAN1ENSG00000159200.13440.76750305.017000.531004.711403.63180K562WDR43
RCAN1ENSG00000159200.13369.85660547.03910-0.564702.046301.31680K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RCAN1 is not available on ENCORE database.





1 RBPs can affect the splicing of RCAN1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERCAN1ENSG00000159200.13chr21-3597532035975458358958343589600835987058359873820.112000.000380.00540includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RCAN1 is not avaliable on ENCORE database.