PSMB6

General Information

Gene Name : PSMB6
Gene ID : ENSG00000142507.9
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PSMB6)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PSMB6	ENSG00000142507.9	90.24	140.59	115.41	ENCSR000AEF
HepG2	PSMB6	ENSG00000142507.9	246.46	211.04	228.75	ENCSR985KAT
K562	PSMB6	ENSG00000142507.9	195.09	164.72	179.91	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PSMB6 is not avaliable on ENCORE database.

Proteins bound to RNA

PSMB6 RNA is bound by 11 proteins.

CanvasJS.com

eCLIP assay for PSMB6 is not avaliable on ENCORE database.

11 proteins are bound to PSMB6 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	4699471	4699592	+	5'-UTR,CDS,intron-Proximal	3.98522	21.99127	K562	DDX3X
chr17	4701664	4701739	+	3'-UTR,CDS	5.33438	19.22875	HepG2	LARP4
chr17	4701302	4701344	+	3'-UTR,CDS,intron-Proximal	4.87034	16.96193	K562	LIN28B
chr17	4701312	4701421	+	3'-UTR,CDS	4.11233	14.82699	HepG2	LARP4
chr17	4701575	4701664	+	3'-UTR,CDS	4.04064	13.10389	HepG2	LARP4
chr17	4701736	4701774	+	3'-UTR,polyA_signal	5.67292	11.15381	K562	PABPC4
chr17	4700039	4700086	+	CDS	4.39017	9.36586	K562	LIN28B
chr17	4701090	4701107	+	3'-UTR,CDS,intron-Proximal	4.97357	9.22045	K562	LIN28B
chr17	4701303	4701366	+	3'-UTR,CDS,intron-Proximal	4.60172	8.90122	K562	RPS3
chr17	4700022	4700086	+	CDS,intron-Proximal	4.23809	7.67223	HepG2	G3BP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 25 entries

eCLIP assay for PSMB6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PSMB6 is not available on ENCORE database.
93 RBPs can affect the levels of PSMB6.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PSMB6 is not available on ENCORE database.

93 RBPs can affect the gene expression of PSMB6 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PSMB6	ENSG00000142507.5	2604.22510	1446.83310	0.84790	37.66050	36.24510	HepG2	ZNF622
PSMB6	ENSG00000142507.5	751.31350	1400.82150	-0.89880	24.86030	22.24650	HepG2	KIF1C
PSMB6	ENSG00000142507.5	3106.40870	1512.77120	1.03800	21.28040	19.80070	K562	PUS1
PSMB6	ENSG00000142507.5	2335.05460	1466.00930	0.67150	18.10620	16.77680	K562	AGGF1
PSMB6	ENSG00000142507.5	1341.13160	2274.86930	-0.76230	17.07160	15.71100	HepG2	QKI
PSMB6	ENSG00000142507.5	247.94430	732.42500	-1.56270	16.98950	14.86340	K562	G3BP2
PSMB6	ENSG00000142507.5	1506.89060	2186.87090	-0.53730	11.41360	10.34060	HepG2	SF3B4
PSMB6	ENSG00000142507.5	1506.01170	2177.21060	-0.53170	11.26620	10.15170	HepG2	RECQL
PSMB6	ENSG00000142507.5	1458.85940	2100.49610	-0.52590	10.37430	9.44590	HepG2	PTBP1
PSMB6	ENSG00000142507.5	2142.42980	1271.66260	0.75240	10.68720	9.20060	K562	PRPF8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 102 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PSMB6 is not available on ENCORE database.

5 RBPs can affect the splicing of PSMB6 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	PSMB6	ENSG00000142507.5	chr17	+	4701554	4701790			4701574	4701790	4701303	4701448	0.05200	0.00000	0.00000	longer	K562	AQR
MXE	PSMB6	ENSG00000142507.5	chr17	+	4700022	4700090	4700732	4700864	4699438	4699591	4700976	4701106	0.13500	0.00001	0.00212	1included	K562	PHF6
MXE	PSMB6	ENSG00000142507.5	chr17	+	4700022	4700090	4700732	4700864	4699438	4699591	4700976	4701106	0.15800	0.00019	0.00940	1included	K562	UCHL5
MXE	PSMB6	ENSG00000142507.5	chr17	+	4700022	4700090	4700732	4700864	4699438	4699591	4700976	4701106	0.08800	0.00103	0.04534	1included	HepG2	BCCIP
MXE	PSMB6	ENSG00000142507.5	chr17	+	4700022	4700090	4700732	4700864	4699438	4699591	4700976	4701106	0.08700	0.00133	0.04580	1included	HepG2	SUPV3L1

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PSMB6

General Information

Functions

Localization

Domains (AlphaFold: PSMB6)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PSMB6 is not avaliable on ENCORE database.

11 proteins are bound to PSMB6 RNA:

eCLIP assay for PSMB6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PSMB6 is not available on ENCORE database.

93 RBPs can affect the gene expression of PSMB6 :

The Knockdown/knockout RNA-Seq assay for PSMB6 is not available on ENCORE database.

5 RBPs can affect the splicing of PSMB6 :

The Knockdown/knockout RNA-Seq assay for PSMB6 is not avaliable on ENCORE database.