PHF20L1

General Information

Gene Name       : PHF20L1
Gene ID             : ENSG00000129292.20
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PHF20L1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PHF20L1ENSG00000129292.2019.2016.1617.68ENCSR000AEF
HepG2PHF20L1ENSG00000129292.206.4013.359.88ENCSR985KAT
K562PHF20L1ENSG00000129292.2017.5619.8618.71ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PHF20L1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PHF20L1 RNA is bound by 17 proteins.  







eCLIP assay for PHF20L1 is not avaliable on ENCORE database.





17 proteins are bound to PHF20L1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr8133837504133837594+3'-UTR,5'-UTR,CDS,intron-Proximal4.381363.89826HepG2BCLAF1
chr8133826873133827041+3'-UTR,CDS,intron-Proximal3.337624.56058HepG2BCLAF1
chr8133829057133829164+3'-UTR,CDS,intron-Distal,intron-Proximal3.494415.86177HepG2U2AF2
chr8133859088133859131+3'-UTR5.677545.13070K562PUM2
chr8133826886133827036+3'-UTR,CDS3.784184.79276K562ZNF622
chr8133844511133844591+3'-UTR,5'-UTR,CDS4.444813.87582K562ZNF622
chr8133806659133806780+3'-UTR,5'-UTR,CDS4.215076.65960HepG2BCLAF1
chr8133816925133816981+5'-UTR,CDS3.379143.12941K562UCHL5
chr8133806981133807058+5'-UTR,CDS3.027944.80218K562UCHL5
chr8133806980133807061+5'-UTR,CDS3.636073.12746HepG2GRWD1
chr8133806980133807061+5'-UTR,CDS5.270858.18727K562ZNF622
chr8133806771133806863+5'-UTR,CDS,intron-Proximal4.717265.64484HepG2PRPF8
chr8133806981133807060+5'-UTR,CDS4.756605.23259HepG2BCLAF1
chr8133816924133816985+5'-UTR,CDS4.483404.90367K562ZNF622
chr8133816859133816925+5'-UTR,CDS,intron-Proximal4.379144.07072K562UCHL5
chr8133819915133819964+intron-Distal,intron-Proximal3.100683.17814K562U2AF1
chr8133812210133812276+intron-Distal3.988373.70058K562CSTF2T
chr8133835193133835261+intron-Distal3.207303.29251K562KHSRP
chr8133812202133812267+intron-Distal4.182024.86595HepG2CSTF2
chr8133788021133788096+intron-Distal4.931784.55547K562PCBP1
chr8133819908133819966+intron-Distal,intron-Proximal3.672646.43870K562U2AF2
chr8133807178133807242+intron-Distal3.559205.35459K562KHSRP
chr8133821833133821844+intron-Distal7.0708632.23116K562NSUN2
chr8133847733133847796+intron-Distal5.022895.61356K562FMR1
chr8133788250133788400+intron-Distal4.8288616.59938K562PTBP1
chr8133811883133812000+intron-Distal4.3987611.93416K562KHSRP
chr8133788311133788393+intron-Distal3.766367.02083HepG2PTBP1
chr8133831314133831393+intron-Distal3.616373.16095HepG2U2AF2
chr8133847732133847815+intron-Distal4.629986.43804HepG2CSTF2
chr8133847730133847823+intron-Distal5.6583513.72251K562CSTF2T
chr8133819903133819963+intron-Distal,intron-Proximal4.6001612.45794HepG2U2AF2
chr8133814550133814628+intron-Distal5.6693510.46904K562PTBP1
chr8133819832133819872+intron-Distal,intron-Proximal4.540374.64001HepG2U2AF2
chr8133812196133812261+intron-Distal3.921353.26999K562KHSRP
chr8133835183133835279+intron-Distal4.820976.73345HepG2KHSRP
chr8133812087133812196+intron-Distal3.987668.20650K562KHSRP
chr8133788004133788092+intron-Distal4.240496.53456HepG2PCBP2
chr8133817049133817106+intron-Distal,intron-Proximal4.021324.14103K562KHSRP
chr8133831167133831275+intron-Distal4.384754.53660HepG2KHSRP
chr8133811890133811991+intron-Distal4.223783.48768HepG2KHSRP
chr8133831026133831124+intron-Distal3.921353.26999K562KHSRP
chr8133815859133815949+intron-Distal3.086203.51696K562KHSRP
chr8133821821133821833+intron-Distal7.0708632.23116K562NSUN2
chr8133822301133822356+intron-Distal3.095573.63916HepG2HNRNPC
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PHF20L1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PHF20L1 is not available on ENCORE database.

  • 85 RBPs can affect the levels of PHF20L1.  








The Knockdown/knockout RNA-Seq assay for PHF20L1 is not available on ENCORE database.





85 RBPs can affect the gene expression of PHF20L1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PHF20L1ENSG00000129292.16891.37260564.253700.659604.967204.28110HepG2AKAP1
PHF20L1ENSG00000129292.161030.18700801.839000.361403.822003.03940HepG2AUH
PHF20L1ENSG00000129292.16624.08070443.563000.492503.169702.34380HepG2CIRBP
PHF20L1ENSG00000129292.16702.06560577.992900.280502.324201.70630HepG2CKAP4
PHF20L1ENSG00000129292.16545.46810947.00960-0.795903.891803.08860HepG2CPSF6
PHF20L1ENSG00000129292.16402.64440540.80630-0.425602.999801.93790HepG2YBX3
PHF20L1ENSG00000129292.16804.59920427.391300.9126011.4650010.19590HepG2DDX21
PHF20L1ENSG00000129292.16698.54380540.518900.369901.992101.45260HepG2DDX3X
PHF20L1ENSG00000129292.16349.65950531.06090-0.602905.814304.82890HepG2DNAJC21
PHF20L1ENSG00000129292.16435.06300526.32840-0.274701.997801.42710HepG2DNAJC2
PHF20L1ENSG00000129292.16591.32300416.655900.505003.429102.42860HepG2EIF3D
PHF20L1ENSG00000129292.16582.71310403.474400.530204.247202.94260HepG2EIF3G
PHF20L1ENSG00000129292.16706.32060493.287300.517803.339202.63810HepG2EIF4A3
PHF20L1ENSG00000129292.16670.51160480.270200.481302.348301.71210HepG2EIF4B
PHF20L1ENSG00000129292.161508.35520920.624600.7122015.4715014.23930HepG2ETF1
PHF20L1ENSG00000129292.161152.22110703.370000.712006.367805.24710HepG2FIP1L1
PHF20L1ENSG00000129292.16408.96710299.151800.451002.457301.71630HepG2FUBP3
PHF20L1ENSG00000129292.16628.79860461.686500.445602.602901.95770HepG2G3BP1
PHF20L1ENSG00000129292.16735.97040518.281800.505803.924602.70910HepG2GNB2L1
PHF20L1ENSG00000129292.16614.374701073.62100-0.805304.070303.30610HepG2GPKOW
PHF20L1ENSG00000129292.16587.88520893.95130-0.604706.987805.91640HepG2HNRNPF
PHF20L1ENSG00000129292.16458.16630670.00330-0.548306.977405.95190HepG2HNRNPL
PHF20L1ENSG00000129292.16651.616801024.56620-0.652903.275102.59670HepG2HNRNPLL
PHF20L1ENSG00000129292.16647.08560880.29640-0.444003.809102.97020HepG2IGF2BP1
PHF20L1ENSG00000129292.16630.62430469.298400.426202.581801.92770HepG2IGF2BP2
PHF20L1ENSG00000129292.16770.63930497.857400.630205.013904.13930HepG2MAGOH
PHF20L1ENSG00000129292.16768.38310500.647500.617903.392802.70080HepG2MATR3
PHF20L1ENSG00000129292.16633.13750436.101800.537802.352401.37990HepG2METAP2
PHF20L1ENSG00000129292.16920.31530569.364200.692708.327106.99180HepG2MSI2
PHF20L1ENSG00000129292.16536.38770729.32720-0.443304.055803.13220HepG2NOL12
PHF20L1ENSG00000129292.16639.34280908.39260-0.506702.195701.52710HepG2NSUN2
PHF20L1ENSG00000129292.16634.77480456.378000.475902.952802.20950HepG2PABPC4
PHF20L1ENSG00000129292.16811.23060555.957700.545002.999701.91910HepG2PCBP2
PHF20L1ENSG00000129292.16593.22330451.714700.393102.308401.56770HepG2PRPF8
PHF20L1ENSG00000129292.16748.62590488.559700.615606.664505.88820HepG2PTBP1
PHF20L1ENSG00000129292.161107.05300739.031700.5829010.992609.97530HepG2PUM1
PHF20L1ENSG00000129292.16777.95790529.085800.556105.773404.91920HepG2QKI
PHF20L1ENSG00000129292.16751.86210536.630300.486402.012301.40150HepG2RAVER1
PHF20L1ENSG00000129292.161440.41700769.470500.9044020.0711018.93670HepG2RBM22
PHF20L1ENSG00000129292.16694.78320543.705800.353602.868202.31920HepG2NELFE
PHF20L1ENSG00000129292.16629.55120506.413800.313902.286401.71970HepG2RECQL
PHF20L1ENSG00000129292.16727.68210526.918700.465602.198201.35430HepG2RPS10
PHF20L1ENSG00000129292.16625.50170405.379300.625605.774804.92450HepG2RPS19
PHF20L1ENSG00000129292.16811.01010564.596300.522404.348003.35490HepG2RPS2
PHF20L1ENSG00000129292.16744.76640446.869700.736805.944104.83780HepG2RRP9
PHF20L1ENSG00000129292.16398.65310527.57550-0.404203.323602.62840HepG2SAFB2
PHF20L1ENSG00000129292.16594.10420406.932800.545804.007402.87730HepG2SERBP1
PHF20L1ENSG00000129292.161296.14860815.452300.668503.918503.11030HepG2SF3A3
PHF20L1ENSG00000129292.16836.10800508.623100.717009.031208.05610HepG2SF3B4
PHF20L1ENSG00000129292.16779.65730615.256400.341603.522202.81070HepG2SMN1
PHF20L1ENSG00000129292.161219.23250869.086400.488307.581106.86420HepG2SRFBP1
PHF20L1ENSG00000129292.16864.36930530.904900.7031010.685509.88910HepG2SRSF1
PHF20L1ENSG00000129292.16556.70250431.930200.366003.017402.44610HepG2SRSF9
PHF20L1ENSG00000129292.161024.64100754.568700.441305.758205.07000HepG2SSB
PHF20L1ENSG00000129292.16632.93110477.232700.407303.206602.60910HepG2TAF15
PHF20L1ENSG00000129292.16701.87940575.690400.285801.891501.46090HepG2TIAL1
PHF20L1ENSG00000129292.16469.35990580.77910-0.307302.293601.77040HepG2TRIM56
PHF20L1ENSG00000129292.16963.10850601.745700.678406.631105.67240HepG2U2AF1
PHF20L1ENSG00000129292.16875.27890723.178700.275302.485401.81750HepG2UPF1
PHF20L1ENSG00000129292.16776.58360527.490800.557902.968401.65990HepG2XRCC5
PHF20L1ENSG00000129292.16865.20300590.036500.552103.237502.08780HepG2XRCC6
PHF20L1ENSG00000129292.16660.73440494.524200.417904.182003.38280HepG2ZC3H8
PHF20L1ENSG00000129292.161023.55360795.362100.363802.869002.31460HepG2ZNF622
PHF20L1ENSG00000129292.161246.71990968.167900.364702.947001.72220K562AARS
PHF20L1ENSG00000129292.161751.991702204.50360-0.331504.156802.77990K562CPEB4
PHF20L1ENSG00000129292.161376.272401654.86770-0.265902.178001.47380K562CPSF6
PHF20L1ENSG00000129292.16592.97460854.79600-0.527605.724704.12560K562CSTF2
PHF20L1ENSG00000129292.163746.524203140.885000.254302.602601.65740K562CELF1
PHF20L1ENSG00000129292.162913.531402281.516900.352706.048505.13690K562DDX47
PHF20L1ENSG00000129292.16969.94030567.559500.773004.939903.55410K562EIF3A
PHF20L1ENSG00000129292.161549.816501929.93390-0.316502.372801.58790K562FIP1L1
PHF20L1ENSG00000129292.161333.48120936.817300.509307.583306.64770K562FXR1
PHF20L1ENSG00000129292.161491.679001059.910500.492903.062202.31180K562G3BP2
PHF20L1ENSG00000129292.161265.060202178.46070-0.784107.898506.61000K562GRSF1
PHF20L1ENSG00000129292.161628.907502061.76240-0.340003.304702.13850K562HNRNPL
PHF20L1ENSG00000129292.162012.986602616.69760-0.378403.671202.75900K562HSPD1
PHF20L1ENSG00000129292.16865.692101237.95210-0.516005.426403.65730K562IGF2BP3
PHF20L1ENSG00000129292.161176.229801538.99560-0.387805.781704.64220K562MTPAP
PHF20L1ENSG00000129292.161379.914401710.07850-0.309503.595802.75750K562NSUN2
PHF20L1ENSG00000129292.161343.509301068.094100.330903.085402.23760K562POLR2G
PHF20L1ENSG00000129292.161393.662402190.73660-0.652508.869607.19100K562PPIG
PHF20L1ENSG00000129292.16644.85270949.92130-0.558804.689003.46780K562PSIP1
PHF20L1ENSG00000129292.163738.712402788.015400.423202.726501.91660K562PUF60
PHF20L1ENSG00000129292.161237.54040938.795200.398502.458601.68990K562RPS19
PHF20L1ENSG00000129292.16621.24780821.53480-0.403202.846801.80340K562SRFBP1
PHF20L1ENSG00000129292.16906.246701150.60910-0.344402.574401.56740K562SRSF5
PHF20L1ENSG00000129292.161493.269901071.305100.479006.046004.82370K562SYNCRIP
PHF20L1ENSG00000129292.16917.577701189.45840-0.374403.365802.45140K562TIA1
PHF20L1ENSG00000129292.16671.20800970.58730-0.532105.156303.76610K562TRIM56
PHF20L1ENSG00000129292.161783.014302258.08730-0.340802.680101.32730K562TRIP6
PHF20L1ENSG00000129292.161348.705601061.402900.345503.364902.48170K562U2AF2
PHF20L1ENSG00000129292.161511.223601813.22330-0.262803.100302.34140K562UPF1
PHF20L1ENSG00000129292.161879.613301613.311000.220302.543601.72980K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PHF20L1 is not available on ENCORE database.





15 RBPs can affect the splicing of PHF20L1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPHF20L1ENSG00000129292.16chr8+1338199291338200281338168561338169851338232901338233730.065000.005760.08463includedK562SRSF1
SEPHF20L1ENSG00000129292.16chr8+133806978133807063133806655133806827133811017133811106-0.199000.000000.00010excludedK562SF3B4
SEPHF20L1ENSG00000129292.16chr8+1338372791338374021338362481338363051338375081338376160.337000.000010.00084includedK562AKAP8L
SEPHF20L1ENSG00000129292.16chr8+1338113281338114181338110171338111061338160631338162770.117000.000150.01778includedHepG2TBRG4
SEPHF20L1ENSG00000129292.16chr8+133837279133837402133836248133836305133837508133837616-0.125000.000970.01383excludedHepG2U2AF2
SEPHF20L1ENSG00000129292.16chr8+133806978133807063133806655133806827133811017133811106-0.094000.001330.01549excludedK562AQR
SEPHF20L1ENSG00000129292.16chr8+133851631133851827133849916133850056133854759133855120-0.110000.008770.07312excludedK562AQR
SEPHF20L1ENSG00000129292.16chr8+133837279133837402133836248133836305133837508133837616-0.243000.002650.08141excludedK562FXR1
SEPHF20L1ENSG00000129292.16chr8+1338372791338374021338362481338363051338375081338376160.240000.001970.02962includedK562PUS1
SEPHF20L1ENSG00000129292.16chr8+133811328133811418133811017133811106133816063133816277-0.074000.000280.09997excludedK562BUD13
SEPHF20L1ENSG00000129292.16chr8+133837279133837402133836248133836305133837508133837616-0.289000.005260.09160excludedHepG2SRSF1
SEPHF20L1ENSG00000129292.16chr8+133851631133851827133849956133850056133854759133855120-0.212000.002500.06211excludedHepG2SF3A3
SEPHF20L1ENSG00000129292.16chr8+1338113401338114181338110171338111061338160631338162770.293000.000420.09131includedHepG2NOL12
SEPHF20L1ENSG00000129292.16chr8+1338113401338114181338110171338111061338160631338162770.163000.000390.01823includedK562HNRNPU
SEPHF20L1ENSG00000129292.16chr8+1338372791338374021338362481338363051338375081338376160.195000.001290.03333includedK562RBM15
SEPHF20L1ENSG00000129292.16chr8+133837279133837402133836248133836305133837508133837616-0.232000.001590.05754excludedK562PTBP1
A3SSPHF20L1ENSG00000129292.16chr8+1338069651338070631338069781338070631338066551338068270.052000.004480.02625longerK562AQR
A3SSPHF20L1ENSG00000129292.16chr8+1338291201338293211338291321338293211338268811338271340.104000.001770.01158longerK562AQR
A3SSPHF20L1ENSG00000129292.16chr8+1338168251338169851338168561338169851338160631338162770.159000.011950.06154longerK562AQR
A3SSPHF20L1ENSG00000129292.16chr8+133816856133816985133816859133816985133816063133816277-0.099000.000910.09236shorterK562RBM15
A5SSPHF20L1ENSG00000129292.16chr8+1338362481338364071338362481338363051338375081338376160.077000.000450.07485longerK562SF3B1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PHF20L1 is not avaliable on ENCORE database.