PCID2

General Information

Gene Name       : PCID2
Gene ID             : ENSG00000126226.21
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PCID2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PCID2ENSG00000126226.2135.9932.1434.06ENCSR000AEF
HepG2PCID2ENSG00000126226.2143.6048.8446.22ENCSR985KAT
K562PCID2ENSG00000126226.2134.7633.3134.03ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PCID2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PCID2 RNA is bound by 22 proteins.  







eCLIP assay for PCID2 is not avaliable on ENCORE database.





22 proteins are bound to PCID2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr13113832417113832473-3'-UTR,intron-Distal,intron-Proximal4.540325.77165HepG2TIAL1
chr13113832502113832602-3'-UTR,CDS,intron-Distal,intron-Proximal3.551574.78537HepG2PABPN1
chr13113832506113832589-3'-UTR,CDS,intron-Distal,intron-Proximal3.652333.36945K562ZNF622
chr13113862857113862916-5'-UTR,CDS,intron-Distal3.469287.29769HepG2PRPF8
chr13113862934113862974-5'-UTR,CDS,intron-Distal,intron-Proximal3.529494.08283K562DDX3X
chr13113862901113862983-5'-UTR,CDS,intron-Distal,intron-Proximal4.594644.52089HepG2NCBP2
chr13113833294113833398-CDS,intron-Distal3.693014.76274K562UCHL5
chr13113854756113854831-CDS,intron-Distal,intron-Proximal3.714685.82148K562DDX3X
chr13113835506113835559-CDS,intron-Distal,intron-Proximal3.351533.75327HepG2U2AF2
chr13113835540113835612-CDS,intron-Distal,intron-Proximal4.8572517.96215HepG2SF3B4
chr13113834503113834546-CDS,intron-Distal,intron-Proximal3.126175.93573HepG2BCLAF1
chr13113839835113839911-CDS,intron-Distal,intron-Proximal4.6157513.51191K562SF3B4
chr13113845254113845289-CDS,intron-Distal3.171633.94979HepG2BCLAF1
chr13113845151113845239-CDS,intron-Distal,intron-Proximal3.042166.69553HepG2PPIG
chr13113851487113851558-CDS,intron-Distal,intron-Proximal4.145218.98325HepG2PPIG
chr13113839760113839807-CDS,intron-Distal,intron-Proximal3.429735.03897K562PRPF8
chr13113832570113832617-CDS,intron-Distal,intron-Proximal3.145825.40232HepG2U2AF2
chr13113839810113839874-CDS,intron-Distal3.783953.86355HepG2PPIG
chr13113849383113849431-CDS,intron-Distal,intron-Proximal4.689487.47028K562DDX24
chr13113854698113854758-CDS,intron-Distal,intron-Proximal4.439195.34978HepG2PRPF8
chr13113833277113833354-CDS,intron-Distal,intron-Proximal3.327038.77086HepG2BCLAF1
chr13113852454113852518-CDS,intron-Distal,intron-Proximal3.334667.18622K562PRPF8
chr13113835443113835518-CDS,intron-Distal,intron-Proximal5.224208.55457HepG2PPIG
chr13113849411113849447-CDS,intron-Distal,intron-Proximal5.367255.25641HepG2BUD13
chr13113850492113850537-CDS,intron-Distal,intron-Proximal3.163955.97777HepG2PPIG
chr13113838661113838708-CDS,intron-Distal3.397215.45876HepG2BCLAF1
chr13113849382113849421-CDS,intron-Distal,intron-Proximal4.594594.21675K562ZNF622
chr13113833295113833361-CDS,intron-Distal3.368204.24993HepG2PPIG
chr13113852455113852518-CDS,intron-Distal,intron-Proximal4.406527.13970HepG2PRPF8
chr13113854737113854822-CDS,intron-Distal,intron-Proximal3.102516.91015HepG2GRWD1
chr13113840266113840343-intron-Distal4.385495.85403HepG2HNRNPC
chr13113834158113834221-intron-Distal,intron-Proximal5.9738512.10660K562AQR
chr13113859300113859351-intron-Distal3.577195.08575HepG2SUGP2
chr13113845063113845135-intron-Distal,intron-Proximal4.0145711.02703K562TIA1
chr13113859971113860101-intron-Distal4.060133.87294K562TARDBP
chr13113846148113846199-intron-Distal3.955233.69425K562TARDBP
chr13113835959113836043-intron-Distal3.477584.70224K562KHSRP
chr13113838830113838923-intron-Distal,intron-Proximal4.710037.39957K562KHSRP
chr13113856888113856995-intron-Distal4.220809.01740HepG2HNRNPL
chr13113835545113835604-intron-Distal,intron-Proximal3.984247.80703K562SF3B4
chr13113834221113834230-intron-Distal,intron-Proximal5.268387.81430K562AQR
chr13113858098113858138-intron-Distal3.846023.54208HepG2SUGP2
chr13113859312113859354-intron-Distal3.184903.11000HepG2HNRNPM
chr13113859120113859187-intron-Distal3.604974.28420HepG2HNRNPM
chr13113839967113840033-intron-Distal,intron-Proximal4.546824.80438HepG2KHSRP
chr13113858138113858201-intron-Distal4.318453.86809HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PCID2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PCID2 is not available on ENCORE database.

  • 81 RBPs can affect the levels of PCID2.  








The Knockdown/knockout RNA-Seq assay for PCID2 is not available on ENCORE database.





81 RBPs can affect the gene expression of PCID2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PCID2ENSG00000126226.17868.600501120.51960-0.367402.517501.61730HepG2ABCF1
PCID2ENSG00000126226.17987.675001141.12560-0.208301.872501.35450HepG2ACO1
PCID2ENSG00000126226.171018.693701533.38510-0.590004.849504.17210HepG2AKAP1
PCID2ENSG00000126226.17957.297801146.34750-0.260002.457701.72980HepG2AKAP8L
PCID2ENSG00000126226.17593.27140793.99490-0.420402.365401.53660HepG2BCLAF1
PCID2ENSG00000126226.17751.170201140.70990-0.6027011.7501010.57270HepG2CKAP4
PCID2ENSG00000126226.171270.249602109.18160-0.731605.360404.29320HepG2CNOT7
PCID2ENSG00000126226.17796.883801055.30060-0.405205.716004.57580HepG2DDX19B
PCID2ENSG00000126226.17701.73420903.98920-0.365402.590401.93040HepG2DDX21
PCID2ENSG00000126226.171041.047801468.91040-0.496704.099403.35040HepG2DDX3X
PCID2ENSG00000126226.17677.44550898.39940-0.407302.224001.52420HepG2DDX55
PCID2ENSG00000126226.17751.950901091.70460-0.537907.858506.82710HepG2DKC1
PCID2ENSG00000126226.17593.98230870.44880-0.551304.264103.14280HepG2EEF2
PCID2ENSG00000126226.17480.56900725.66410-0.594604.825803.36190HepG2EFTUD2
PCID2ENSG00000126226.17522.92390706.61940-0.434302.578701.70290HepG2EIF3D
PCID2ENSG00000126226.17875.758601340.58490-0.614305.183204.31000HepG2EIF4A3
PCID2ENSG00000126226.17869.749301131.38840-0.379402.549001.80690HepG2FIP1L1
PCID2ENSG00000126226.171076.68130747.946800.525505.557204.45420HepG2FUBP3
PCID2ENSG00000126226.17779.968301098.02950-0.493402.877501.74000HepG2FUS
PCID2ENSG00000126226.17484.39600629.15600-0.377202.337301.52100HepG2GEMIN5
PCID2ENSG00000126226.17769.038201031.22840-0.423202.886901.84550HepG2GNB2L1
PCID2ENSG00000126226.17492.07270885.13790-0.8470010.297709.16980HepG2HNRNPA1
PCID2ENSG00000126226.17737.74970984.56550-0.416403.228902.48650HepG2HNRNPC
PCID2ENSG00000126226.17627.83820780.42230-0.313902.300201.43380HepG2HNRNPM
PCID2ENSG00000126226.17515.93990978.05510-0.9227019.9539018.43860HepG2HNRNPU
PCID2ENSG00000126226.171099.134401617.15360-0.557104.239102.71080HepG2HSPD1
PCID2ENSG00000126226.171066.613701615.90830-0.599304.316602.74790HepG2KRR1
PCID2ENSG00000126226.17936.520901267.67820-0.436802.691101.87270HepG2LARP4
PCID2ENSG00000126226.17762.110201010.23840-0.406603.126001.91880HepG2LARP7
PCID2ENSG00000126226.171046.340301352.91710-0.370702.490901.86800HepG2MAGOH
PCID2ENSG00000126226.17639.01200915.37470-0.518504.406503.40010HepG2MSI2
PCID2ENSG00000126226.17880.114201392.58070-0.662006.526205.57120HepG2NCBP2
PCID2ENSG00000126226.171202.921201574.19020-0.388104.466803.49900HepG2NOL12
PCID2ENSG00000126226.17737.24780968.09060-0.393004.339303.30870HepG2PARN
PCID2ENSG00000126226.17732.370101039.48530-0.505202.838801.78450HepG2PCBP2
PCID2ENSG00000126226.17435.50560693.08920-0.670305.166004.09690HepG2PRPF8
PCID2ENSG00000126226.17834.758201229.01880-0.558108.941608.07140HepG2PTBP1
PCID2ENSG00000126226.171346.999501595.21830-0.244003.077702.46060HepG2PUM1
PCID2ENSG00000126226.171294.594101594.04220-0.300202.724502.05860HepG2PUM2
PCID2ENSG00000126226.17743.010501162.28590-0.6455012.0808010.95010HepG2PUS1
PCID2ENSG00000126226.17830.442701208.03420-0.540706.213205.24010HepG2RBM25
PCID2ENSG00000126226.17962.765301367.79010-0.506607.849207.02060HepG2NELFE
PCID2ENSG00000126226.17485.89580687.56580-0.500904.137903.40160HepG2RPS19
PCID2ENSG00000126226.17808.626401123.49710-0.474503.815102.87950HepG2RPS2
PCID2ENSG00000126226.171095.203202118.42590-0.9518010.589309.06980HepG2RPS3A
PCID2ENSG00000126226.17792.779401015.71260-0.357504.511903.72570HepG2SMN1
PCID2ENSG00000126226.172927.017101912.826800.6136017.9846017.00330HepG2SRFBP1
PCID2ENSG00000126226.171099.387201335.60510-0.280803.014902.52650HepG2SRSF1
PCID2ENSG00000126226.171175.091001483.73540-0.336504.212403.46900HepG2SRSF5
PCID2ENSG00000126226.171562.595301086.578100.5241010.129009.18910HepG2SRSF9
PCID2ENSG00000126226.171126.304301660.72330-0.5602011.7353010.82210HepG2SSB
PCID2ENSG00000126226.171281.950101687.39800-0.396506.746005.85040HepG2SUCLG1
PCID2ENSG00000126226.171476.888701200.469000.298902.909702.33620HepG2TAF15
PCID2ENSG00000126226.17970.964601582.65150-0.704903.303402.13970HepG2TBRG4
PCID2ENSG00000126226.17483.76490950.31380-0.9741017.0845016.03460HepG2TIAL1
PCID2ENSG00000126226.171192.078001468.11980-0.300502.403601.59360HepG2TUFM
PCID2ENSG00000126226.17720.05410528.333000.446603.059302.26260HepG2UCHL5
PCID2ENSG00000126226.17811.706501103.18990-0.442702.417501.42830HepG2XRCC6
PCID2ENSG00000126226.17741.28420881.30760-0.249602.146101.54370HepG2ZC3H8
PCID2ENSG00000126226.171044.443801529.18840-0.550009.667608.68870K562AGGF1
PCID2ENSG00000126226.171255.047501680.34910-0.421004.045302.80820K562AKAP8
PCID2ENSG00000126226.171107.380401591.19030-0.523005.781504.81640K562AKAP8L
PCID2ENSG00000126226.171321.711201669.54270-0.337003.770702.69170K562ATP5C1
PCID2ENSG00000126226.17943.094201128.54690-0.259002.406301.51360K562BCLAF1
PCID2ENSG00000126226.171242.443501827.46220-0.556708.152506.11930K562CCDC124
PCID2ENSG00000126226.171370.128201794.15660-0.389003.345001.72960K562DDX19B
PCID2ENSG00000126226.17698.86630901.91200-0.368003.059001.96120K562DDX3X
PCID2ENSG00000126226.171106.709201325.90530-0.260702.571201.94010K562DDX47
PCID2ENSG00000126226.17702.30120914.39620-0.380703.815602.21190K562DDX6
PCID2ENSG00000126226.17644.16180924.41940-0.521104.321803.16310K562EFTUD2
PCID2ENSG00000126226.17816.107201222.49910-0.583009.110407.91960K562EIF2S2
PCID2ENSG00000126226.17534.41250989.87420-0.889307.174905.38760K562EIF3D
PCID2ENSG00000126226.171774.598302096.15140-0.240302.265301.41180K562EIF4G2
PCID2ENSG00000126226.17558.62850761.36500-0.446703.136602.22120K562FMR1
PCID2ENSG00000126226.171294.040301629.10720-0.332202.817702.05570K562GRSF1
PCID2ENSG00000126226.17630.13510804.34980-0.352202.387201.82680K562HNRNPC
PCID2ENSG00000126226.17942.943201221.80180-0.373804.004302.92190K562HNRNPU
PCID2ENSG00000126226.171245.075601688.64870-0.439604.415803.34070K562KIF1C
PCID2ENSG00000126226.171180.720001616.45390-0.453204.651703.15170K562MAK16
PCID2ENSG00000126226.171383.975701891.71340-0.450905.213903.88310K562MBNL1
PCID2ENSG00000126226.17735.90510940.93240-0.354602.996401.71850K562NCBP2
PCID2ENSG00000126226.17673.81670910.60690-0.434502.857801.53700K562NONO
PCID2ENSG00000126226.171308.051601113.964900.231602.642001.91010K562NSUN2
PCID2ENSG00000126226.17744.708901042.25140-0.485004.450503.20290K562PCBP2
PCID2ENSG00000126226.17633.47890859.73220-0.440603.953402.99030K562POLR2G
PCID2ENSG00000126226.17689.85650899.56390-0.382902.435001.73010K562PRPF8
PCID2ENSG00000126226.17547.36800721.16760-0.397802.432901.59040K562PSIP1
PCID2ENSG00000126226.17902.113201138.05170-0.335202.863902.18990K562PTBP1
PCID2ENSG00000126226.171887.917202383.50800-0.336304.445103.22370K562PUM2
PCID2ENSG00000126226.17884.493601578.02040-0.8352012.0298010.94460K562PUS1
PCID2ENSG00000126226.17983.796001537.54630-0.6442010.781509.63450K562RBM15
PCID2ENSG00000126226.17476.11260975.91830-1.0355017.7714014.26800K562RBM25
PCID2ENSG00000126226.17592.30100916.38040-0.629604.955203.86050K562RPS19
PCID2ENSG00000126226.17669.22460898.17950-0.424503.062201.34280K562SRP68
PCID2ENSG00000126226.171034.789901335.21620-0.367704.975303.26320K562TROVE2
PCID2ENSG00000126226.171222.027601050.999900.217402.129801.37990K562WDR43
PCID2ENSG00000126226.17674.75310938.63830-0.476203.547402.11630K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PCID2 is not available on ENCORE database.





26 RBPs can affect the splicing of PCID2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPCID2ENSG00000126226.17chr13-113838100113838342113835442113835544113838659113838801-0.076000.000000.00003excludedK562SRSF1
SEPCID2ENSG00000126226.17chr13-1138623371138625201138546941138548301138629121138629430.122000.000000.00000includedK562PRPF8
SEPCID2ENSG00000126226.17chr13-1138415131138415811138397981138398741138451851138453060.051000.000850.01790includedHepG2U2AF1
SEPCID2ENSG00000126226.17chr13-113839798113839874113838659113838801113849384113849439-0.109000.000490.01125excludedHepG2U2AF1
SEPCID2ENSG00000126226.17chr13-1138381001138383421138354431138355441138386591138388010.140000.001340.03971includedK562AKAP8L
SEPCID2ENSG00000126226.17chr13-113845185113845289113839798113839874113849384113849439-0.092000.000290.01184excludedK562AKAP8L
SEPCID2ENSG00000126226.17chr13-113845185113845289113839798113839874113849384113849439-0.115000.000090.01147excludedHepG2QKI
SEPCID2ENSG00000126226.17chr13-113845185113845306113839798113839874113849384113849439-0.085000.001390.01861excludedHepG2U2AF2
SEPCID2ENSG00000126226.17chr13-1138381001138383421138354421138355441138386591138388010.190000.000000.00000includedK562AQR
SEPCID2ENSG00000126226.17chr13-113845185113845289113838717113838801113849384113849439-0.091000.009000.07467excludedK562AQR
SEPCID2ENSG00000126226.17chr13-113838100113838342113835443113835544113838659113838801-0.160000.000000.00000excludedK562FXR1
SEPCID2ENSG00000126226.17chr13-1138381001138383421138354421138355441138386591138388010.115000.000190.04587includedK562HNRNPA1
SEPCID2ENSG00000126226.17chr13-1138397981138398741138386591138388011138493841138494390.134000.000090.02443includedK562DROSHA
SEPCID2ENSG00000126226.17chr13-1138381001138383421138354431138355441138386591138388010.168000.000000.00064includedHepG2UCHL5
SEPCID2ENSG00000126226.17chr13-113845185113845289113839798113839874113849384113849439-0.241000.000000.00000excludedK562PUS1
SEPCID2ENSG00000126226.17chr13-113838100113838342113835443113835544113838659113838801-0.090000.000010.00063excludedHepG2PTBP1
SEPCID2ENSG00000126226.17chr13-113845185113845306113839798113839874113849384113849439-0.121000.000050.01629excludedK562LARP4
SEPCID2ENSG00000126226.17chr13-113845185113845289113839798113839874113849384113849439-0.146000.000500.03077excludedK562EFTUD2
SEPCID2ENSG00000126226.17chr13-113839798113839874113838659113838801113849384113849439-0.129000.002810.05237excludedK562U2AF1
SEPCID2ENSG00000126226.17chr13-1138381161138383421138354431138355441138386591138388010.120000.000010.00250includedHepG2DDX6
SEPCID2ENSG00000126226.17chr13-113838100113838342113835443113835544113838659113838801-0.090000.000000.00000excludedHepG2SRSF1
SEPCID2ENSG00000126226.17chr13-113838100113838342113835443113835544113838659113838801-0.066000.000520.06043excludedHepG2SSB
SEPCID2ENSG00000126226.17chr13-113845185113845289113839798113839874113849384113849439-0.051000.000250.02479excludedK562HNRNPUL1
SEPCID2ENSG00000126226.17chr13-113838100113838342113835443113835544113838659113838801-0.069000.000090.00712excludedHepG2PCBP1
SEPCID2ENSG00000126226.17chr13-1138381001138383421138354431138355441138386591138388010.207000.001420.04451includedK562UTP18
SEPCID2ENSG00000126226.17chr13-113845185113845289113839798113839874113849384113849439-0.136000.000050.00310excludedK562UTP18
SEPCID2ENSG00000126226.17chr13-113845185113845289113839798113839874113849384113849439-0.093000.000190.00722excludedK562RBM15
SEPCID2ENSG00000126226.17chr13-113845185113845289113839798113839874113849384113849439-0.064000.003310.06847excludedK562AGGF1
SEPCID2ENSG00000126226.17chr13-113838100113838342113835443113835544113838659113838801-0.059000.000790.03730excludedK562HNRNPK
SEPCID2ENSG00000126226.17chr13-113838100113838342113835443113835544113838659113838801-0.070000.000020.00161excludedK562PTBP1
A3SSPCID2ENSG00000126226.17chr13-113838659113838801113838659113838766113839798113839874-0.145000.000000.00001shorterK562U2AF2
A3SSPCID2ENSG00000126226.17chr13-113838659113838801113838659113838766113839798113839874-0.175000.001100.02874shorterHepG2U2AF2
A3SSPCID2ENSG00000126226.17chr13-1138546941138548521138546941138548301138629121138629660.090000.000000.00000longerK562AQR
A3SSPCID2ENSG00000126226.17chr13-1138324871138326701138324871138326011138332791138334270.082000.000000.00000longerK562AQR
A3SSPCID2ENSG00000126226.17chr13-113838659113838801113838659113838766113839798113839874-0.096000.000530.02398shorterHepG2U2AF1
A5SSPCID2ENSG00000126226.17chr13-1138546941138548301138547401138548301138525041138525780.068000.000570.08758longerHepG2HNRNPU
A5SSPCID2ENSG00000126226.17chr13-1138623371138629641138629121138629641138546941138548300.106000.000000.00001longerK562PRPF8
A5SSPCID2ENSG00000126226.17chr13-1138623371138629641138629121138629641138546941138548300.102000.000000.00030longerK562EFTUD2
A5SSPCID2ENSG00000126226.17chr13-1138623371138629641138629121138629641138546941138548300.092000.000020.00727longerHepG2PRPF8
A5SSPCID2ENSG00000126226.17chr13-1138623371138629641138629121138629641138546941138548300.056000.000820.06432longerHepG2U2AF1
MXEPCID2ENSG00000126226.17chr13-1138397981138398741138451851138452891138386591138388011138493841138494390.172000.000010.000451includedHepG2FTO
MXEPCID2ENSG00000126226.17chr13-113839798113839874113845185113845289113838659113838801113849384113849439-0.226000.000220.006302includedK562DROSHA
MXEPCID2ENSG00000126226.17chr13-113838659113838801113845202113845289113835442113835544113849384113849439-0.226000.000010.000682includedK562AGGF1
MXEPCID2ENSG00000126226.17chr13-113838717113838801113845185113845289113835442113835544113849384113849439-0.061000.002170.017842includedK562AQR
MXEPCID2ENSG00000126226.17chr13-1138397981138398741138451851138452891138386591138388011138493841138494390.151000.001610.043781includedHepG2TIAL1
MXEPCID2ENSG00000126226.17chr13-113839798113839874113845185113845289113838659113838801113849384113849439-0.263000.000330.011522includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PCID2 is not avaliable on ENCORE database.