NUP98

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NUP98	ENSG00000110713.16	45.43	65.72	55.58	ENCSR000AEF
HepG2	NUP98	ENSG00000110713.16	63.46	55.58	59.52	ENCSR985KAT
K562	NUP98	ENSG00000110713.16	142.41	131.89	137.15	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NUP98 is not avaliable on ENCORE database.

Proteins bound to RNA

NUP98 RNA is bound by 39 proteins.

eCLIP assay for NUP98 is not avaliable on ENCORE database.

39 proteins are bound to NUP98 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	3765797	3765841	-	3'-UTR,CDS,intron-Distal	3.35746	3.59112	HepG2	PPIG
chr11	3697014	3697104	-	3'-UTR,intron-Distal,intron-Proximal	3.64392	6.25570	K562	UPF1
chr11	3696599	3696730	-	3'-UTR,intron-Distal	3.88315	10.48414	K562	UPF1
chr11	3696344	3696392	-	3'-UTR,intron-Distal	4.81631	11.15990	K562	PUM2
chr11	3704392	3704456	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.43185	7.87148	HepG2	PRPF8
chr11	3765829	3765881	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.37123	10.62055	K562	U2AF2
chr11	3752660	3752786	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.80509	10.41103	K562	IGF2BP2
chr11	3733208	3733280	-	3'-UTR,intron-Distal	3.02601	4.61304	K562	KHSRP
chr11	3696274	3696310	-	3'-UTR,intron-Distal	3.31063	3.07801	K562	UPF1
chr11	3732976	3733124	-	3'-UTR,intron-Distal,intron-Proximal,polyA_site	3.69100	3.31830	K562	KHSRP
chr11	3700877	3700936	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.87270	11.04556	K562	YBX3
chr11	3765859	3765880	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.79104	3.56019	HepG2	GRWD1
chr11	3756490	3756559	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.84567	7.65598	K562	U2AF2
chr11	3704352	3704459	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.84743	7.75444	K562	PRPF8
chr11	3716737	3716809	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.31953	7.16637	K562	U2AF2
chr11	3765832	3765891	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.37454	6.48421	K562	U2AF1
chr11	3696260	3696321	-	3'-UTR,intron-Distal	5.90305	17.39877	K562	PUM2
chr11	3696730	3696812	-	3'-UTR,intron-Distal	5.69013	10.41090	K562	UPF1
chr11	3765819	3765902	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.61414	5.06646	HepG2	U2AF1
chr11	3752701	3752795	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.28815	7.01336	K562	FXR2
chr11	3733747	3733811	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.12714	4.48980	K562	PRPF8
chr11	3765854	3765880	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.29699	3.69978	K562	DDX24
chr11	3696424	3696484	-	3'-UTR,intron-Distal	3.40695	4.96603	K562	UPF1
chr11	3716775	3716805	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.46914	3.87469	HepG2	BCLAF1
chr11	3765789	3765859	-	3'-UTR,CDS,intron-Distal	4.74577	7.71151	HepG2	GRWD1
chr11	3765835	3765880	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.45356	5.21007	K562	SRSF1
chr11	3696812	3696898	-	3'-UTR,intron-Distal	3.49167	9.01762	K562	UPF1
chr11	3716749	3716846	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.82107	7.96049	HepG2	U2AF2
chr11	3818656	3818727	-	5'-UTR,intron-Distal,intron-Proximal	3.63471	10.54846	HepG2	DDX3X
chr11	3720363	3720472	-	5'-UTR,CDS,intron-Distal	4.26814	9.28811	HepG2	GRWD1
chr11	3818665	3818778	-	5'-UTR,intron-Distal,intron-Proximal	4.72228	13.41210	K562	DDX3X
chr11	3818731	3818781	-	5'-UTR,intron-Distal,intron-Proximal	3.58346	4.94451	K562	FMR1
chr11	3720509	3720567	-	5'-UTR,CDS,intron-Distal	3.24128	4.02291	HepG2	GRWD1
chr11	3720395	3720459	-	5'-UTR,CDS,intron-Distal	3.05089	6.09950	HepG2	BCLAF1
chr11	3774542	3774589	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.14390	4.48219	K562	DDX24
chr11	3774537	3774605	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.21311	9.03223	K562	BUD13
chr11	3818740	3818777	-	5'-UTR,intron-Distal,intron-Proximal	4.37743	3.99162	HepG2	DDX3X
chr11	3818607	3818631	-	5'-UTR,intron-Distal	3.04406	3.95292	K562	AQR
chr11	3774514	3774616	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.35427	8.78349	K562	SRSF1
chr11	3774615	3774653	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.39809	4.95320	HepG2	U2AF2
chr11	3774547	3774612	-	5'-UTR,CDS,intron-Distal	3.38311	3.04831	K562	RBM15
chr11	3774531	3774604	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.16982	5.71745	HepG2	SRSF1
chr11	3818627	3818665	-	5'-UTR,intron-Distal	4.91960	9.68900	K562	DDX3X
chr11	3774615	3774653	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.67105	3.00614	K562	U2AF2
chr11	3818581	3818633	-	5'-UTR,intron-Distal	4.64126	6.23016	HepG2	PRPF8
chr11	3720396	3720482	-	5'-UTR,CDS,intron-Distal	3.24041	3.09884	K562	LIN28B
chr11	3774544	3774599	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.32141	9.03865	HepG2	BCLAF1
chr11	3774545	3774606	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.17667	3.68241	HepG2	G3BP1
chr11	3734990	3735055	-	CDS,intron-Distal,intron-Proximal	4.20636	6.01372	K562	AQR
chr11	3723788	3723835	-	CDS,intron-Distal	4.79603	6.26177	K562	FMR1
chr11	3723896	3724008	-	CDS,intron-Distal,intron-Proximal	3.79261	3.18004	K562	FXR1
chr11	3723931	3724069	-	CDS,intron-Distal,intron-Proximal	3.28719	4.80598	K562	METAP2
chr11	3784241	3784268	-	CDS,intron-Distal,intron-Proximal	3.16022	7.36535	K562	ZNF622
chr11	3800115	3800194	-	CDS,intron-Distal,intron-Proximal	4.07749	7.27605	HepG2	GRWD1
chr11	3803281	3803338	-	CDS,intron-Distal	3.24479	7.92361	K562	ZNF622
chr11	3781834	3781870	-	CDS,intron-Distal,intron-Proximal	3.51314	5.01422	K562	GPKOW
chr11	3784184	3784260	-	CDS,intron-Distal,intron-Proximal	3.90520	11.16705	K562	UCHL5
chr11	3723909	3724048	-	CDS,intron-Distal,intron-Proximal	4.11934	7.76216	HepG2	G3BP1
chr11	3784180	3784263	-	CDS,intron-Distal,intron-Proximal	3.98891	8.51432	HepG2	BCLAF1
chr11	3723916	3723975	-	CDS,intron-Distal,intron-Proximal	4.11914	12.19633	K562	IGF2BP2
chr11	3781836	3781857	-	CDS,intron-Distal,intron-Proximal	4.68784	3.89826	HepG2	BCLAF1
chr11	3784105	3784173	-	CDS,intron-Distal,intron-Proximal	3.66833	5.28657	K562	RBM15
chr11	3789913	3789975	-	CDS,intron-Distal,intron-Proximal	3.69156	6.24329	K562	IGF2BP1
chr11	3797184	3797250	-	CDS,intron-Distal	4.54232	9.74753	HepG2	BCLAF1
chr11	3735073	3735143	-	CDS,intron-Distal	3.14825	4.85261	K562	DDX24
chr11	3734948	3735068	-	CDS,intron-Distal,intron-Proximal	3.81342	8.10412	K562	PRPF8
chr11	3742002	3742067	-	CDS,intron-Distal,intron-Proximal	4.05361	5.76944	HepG2	U2AF2
chr11	3746372	3746393	-	CDS,intron-Distal	4.42259	3.89826	HepG2	BCLAF1
chr11	3793099	3793151	-	CDS,intron-Distal	3.22039	4.61799	HepG2	BCLAF1
chr11	3742028	3742065	-	CDS,intron-Distal,intron-Proximal	3.48661	9.08133	K562	BUD13
chr11	3735074	3735200	-	CDS,intron-Distal	3.42669	7.47808	K562	GRWD1
chr11	3784066	3784154	-	CDS,intron-Distal,intron-Proximal	3.10769	7.09377	K562	KHSRP
chr11	3800401	3800469	-	CDS,intron-Distal	4.14292	9.53524	K562	DDX24
chr11	3742007	3742066	-	CDS,intron-Distal,intron-Proximal	3.84940	8.06144	K562	U2AF2
chr11	3744380	3744388	-	CDS,intron-Distal,intron-Proximal	3.99211	7.64728	K562	AQR
chr11	3800123	3800193	-	CDS,intron-Distal,intron-Proximal	3.75383	5.48238	K562	IGF2BP1
chr11	3800190	3800268	-	CDS,intron-Distal,intron-Proximal	3.07659	8.98598	K562	UCHL5
chr11	3784124	3784186	-	CDS,intron-Distal,intron-Proximal	5.22345	8.25598	HepG2	PPIG
chr11	3797067	3797125	-	CDS,intron-Distal,intron-Proximal	5.08836	7.02967	HepG2	PRPF8
chr11	3727819	3727870	-	CDS,intron-Distal,intron-Proximal	3.12170	3.76090	HepG2	U2AF2
chr11	3789820	3789855	-	CDS,intron-Distal	3.66468	4.97821	K562	BUD13
chr11	3793101	3793151	-	CDS,intron-Distal	3.51793	4.13746	HepG2	PPIG
chr11	3735134	3735217	-	CDS,intron-Distal	3.54135	8.45427	K562	UCHL5
chr11	3740643	3740776	-	CDS,intron-Distal,intron-Proximal	4.31955	17.10002	HepG2	BCLAF1
chr11	3735049	3735091	-	CDS,intron-Distal	4.57406	6.47760	K562	YBX3
chr11	3800407	3800483	-	CDS,intron-Distal	3.42512	3.81856	K562	IGF2BP1
chr11	3742016	3742066	-	CDS,intron-Distal,intron-Proximal	3.20081	4.21310	K562	U2AF1
chr11	3803270	3803340	-	CDS,intron-Distal,intron-Proximal	3.13028	5.75815	K562	DDX3X
chr11	3707147	3707265	-	CDS,intron-Distal,intron-Proximal	5.38832	13.78100	HepG2	PRPF8
chr11	3744386	3744458	-	CDS,intron-Distal,intron-Proximal	3.44513	10.76374	HepG2	BCLAF1
chr11	3784131	3784178	-	CDS,intron-Distal,intron-Proximal	3.49170	10.17838	K562	ZNF622
chr11	3746372	3746449	-	CDS,intron-Distal	4.00871	5.81804	K562	BUD13
chr11	3797191	3797253	-	CDS,intron-Distal,intron-Proximal	3.05730	3.45514	K562	U2AF2
chr11	3784131	3784135	-	CDS,intron-Distal,intron-Proximal	4.63011	3.02457	HepG2	BCLAF1
chr11	3733938	3733975	-	CDS,intron-Distal,intron-Proximal	4.51661	4.20763	HepG2	U2AF2
chr11	3784132	3784165	-	CDS,intron-Distal,intron-Proximal	4.25024	4.04622	HepG2	GRWD1
chr11	3746349	3746413	-	CDS,intron-Distal	3.92792	3.11149	HepG2	G3BP1
chr11	3800409	3800491	-	CDS,intron-Distal,intron-Proximal	3.00216	7.46666	HepG2	BUD13
chr11	3800128	3800183	-	CDS,intron-Distal,intron-Proximal	3.26836	4.06924	K562	IGF2BP2
chr11	3800102	3800133	-	CDS,intron-Distal,intron-Proximal	3.68653	8.62113	K562	YBX3
chr11	3752622	3752662	-	CDS,intron-Distal,intron-Proximal	4.93844	6.58593	HepG2	BCLAF1
chr11	3797201	3797278	-	CDS,intron-Distal,intron-Proximal	3.21970	5.91714	K562	SF3B4
chr11	3714354	3714475	-	CDS,intron-Distal,intron-Proximal	3.20828	5.48095	K562	PRPF8
chr11	3793105	3793159	-	CDS,intron-Distal,intron-Proximal	3.65453	11.70301	K562	ZNF622
chr11	3721858	3721895	-	CDS,intron-Distal	3.53100	5.73766	K562	YBX3
chr11	3784178	3784241	-	CDS,intron-Distal,intron-Proximal	3.08716	14.68035	K562	ZNF622
chr11	3744460	3744510	-	CDS,intron-Distal	3.19922	7.92361	K562	ZNF622
chr11	3789893	3789985	-	CDS,intron-Distal,intron-Proximal	3.34477	8.79469	K562	U2AF2
chr11	3735080	3735164	-	CDS,intron-Distal	4.72962	11.13876	HepG2	BCLAF1
chr11	3789919	3789987	-	CDS,intron-Distal,intron-Proximal	3.18513	8.42939	HepG2	U2AF2
chr11	3800198	3800271	-	CDS,intron-Distal,intron-Proximal	4.50378	13.85602	HepG2	BCLAF1
chr11	3800449	3800488	-	CDS,intron-Distal,intron-Proximal	3.05089	5.27152	HepG2	BCLAF1
chr11	3700714	3700788	-	CDS,intron-Distal,intron-Proximal	5.17206	6.75320	K562	AQR
chr11	3800188	3800273	-	CDS,intron-Distal,intron-Proximal	4.66325	8.51520	K562	DDX24
chr11	3803271	3803346	-	CDS,intron-Distal,intron-Proximal	3.13208	4.55250	HepG2	GRWD1
chr11	3800458	3800515	-	CDS,intron-Distal,intron-Proximal	4.04985	5.47926	K562	AQR
chr11	3697818	3697877	-	CDS,intron-Distal,intron-Proximal	5.25389	7.28294	K562	AQR
chr11	3733902	3733940	-	CDS,intron-Distal	3.17913	3.73997	K562	ZNF622
chr11	3789841	3789913	-	CDS,intron-Distal,intron-Proximal	4.48588	3.98311	K562	IGF2BP1
chr11	3744386	3744504	-	CDS,intron-Distal,intron-Proximal	3.49538	6.25351	HepG2	G3BP1
chr11	3733891	3733945	-	CDS,intron-Distal	3.87091	7.28307	HepG2	BCLAF1
chr11	3792974	3793056	-	CDS,intron-Distal,intron-Proximal	3.98752	10.85943	K562	IGF2BP1
chr11	3733889	3733955	-	CDS,intron-Distal	3.76160	4.65365	HepG2	GRWD1
chr11	3800125	3800184	-	CDS,intron-Distal,intron-Proximal	3.66530	6.67313	HepG2	BCLAF1
chr11	3744386	3744410	-	CDS,intron-Distal,intron-Proximal	3.24256	10.27886	K562	ZNF622
chr11	3800194	3800268	-	CDS,intron-Distal,intron-Proximal	4.82624	6.73025	HepG2	GRWD1
chr11	3800388	3800417	-	CDS,intron-Distal	3.70430	4.76554	HepG2	BCLAF1
chr11	3784189	3784258	-	CDS,intron-Distal,intron-Proximal	3.74542	5.41973	HepG2	G3BP1
chr11	3740643	3740717	-	CDS,intron-Distal,intron-Proximal	3.25086	3.22540	HepG2	G3BP1
chr11	3741953	3742058	-	CDS,intron-Distal,intron-Proximal	4.94753	16.89898	HepG2	BCLAF1
chr11	3712616	3712714	-	CDS,intron-Distal	3.68296	3.18004	K562	FXR1
chr11	3716885	3716953	-	intron-Distal,intron-Proximal	4.32389	7.29386	HepG2	U2AF2
chr11	3747484	3747540	-	intron-Distal	5.08880	6.84553	HepG2	U2AF2
chr11	3776627	3776704	-	intron-Distal	4.30748	4.84804	HepG2	HNRNPC
chr11	3774448	3774488	-	intron-Distal,intron-Proximal	3.23465	3.47285	K562	PRPF8
chr11	3765631	3765697	-	intron-Distal,intron-Proximal	4.26461	4.23094	K562	TIA1
chr11	3771925	3771982	-	intron-Distal	5.41185	9.85031	HepG2	ILF3
chr11	3802584	3802726	-	intron-Distal	3.31472	5.53738	K562	LSM11
chr11	3779982	3780034	-	intron-Distal	4.38771	5.96509	K562	PTBP1
chr11	3756914	3756985	-	intron-Distal	4.34393	9.36782	K562	HNRNPL
chr11	3771264	3771358	-	intron-Distal	3.52218	4.48570	K562	HNRNPL
chr11	3756786	3756897	-	intron-Distal	3.48008	6.04536	K562	KHSRP
chr11	3745167	3745242	-	intron-Distal	4.95546	7.47576	K562	KHSRP
chr11	3730554	3730609	-	intron-Distal	3.80337	3.61897	HepG2	HNRNPC
chr11	3798197	3798345	-	intron-Distal	3.30191	8.32476	K562	KHSRP
chr11	3765630	3765696	-	intron-Distal,intron-Proximal	4.33547	7.08156	K562	PRPF8
chr11	3720226	3720312	-	intron-Distal,intron-Proximal	5.19737	5.17615	K562	AQR
chr11	3744313	3744342	-	intron-Distal,intron-Proximal	5.23482	5.69951	K562	AQR
chr11	3704353	3704429	-	intron-Distal,intron-Proximal	3.92789	7.79506	K562	AQR
chr11	3797002	3797081	-	intron-Distal,intron-Proximal	3.42973	5.03897	K562	PRPF8
chr11	3746080	3746148	-	intron-Distal	3.89065	3.06150	K562	KHSRP
chr11	3818577	3818607	-	intron-Distal	4.01187	5.83621	K562	AQR
chr11	3803213	3803272	-	intron-Distal,intron-Proximal	5.24759	6.83960	K562	AQR
chr11	3818533	3818594	-	intron-Distal	3.80422	7.20058	HepG2	RBM22
chr11	3708118	3708209	-	intron-Distal	3.44127	5.42306	HepG2	XPO5
chr11	3765921	3766070	-	intron-Distal,intron-Proximal	3.46851	6.55259	K562	KHSRP
chr11	3744342	3744380	-	intron-Distal,intron-Proximal	4.56698	12.58875	K562	AQR
chr11	3765413	3765498	-	intron-Distal	3.27007	7.30615	K562	KHSRP
chr11	3729275	3729336	-	intron-Distal	3.73873	3.21162	HepG2	HNRNPC
chr11	3756926	3757053	-	intron-Distal	3.87070	14.28180	K562	AGGF1
chr11	3756675	3756724	-	intron-Distal	4.81253	4.45977	HepG2	U2AF2
chr11	3756943	3757033	-	intron-Distal	3.30040	3.57928	K562	GTF2F1
chr11	3716840	3716892	-	intron-Distal,intron-Proximal	4.77672	13.51191	K562	SF3B4
chr11	3772841	3772927	-	intron-Distal	3.78060	3.31709	K562	ILF3
chr11	3779982	3780036	-	intron-Distal	4.09859	21.49794	HepG2	PTBP1
chr11	3723436	3723526	-	intron-Distal	3.54367	4.90204	K562	TARDBP
chr11	3739760	3739835	-	intron-Distal	3.94105	10.42483	K562	PTBP1
chr11	3718279	3718347	-	intron-Distal	3.99246	3.66668	K562	KHSRP
chr11	3745242	3745294	-	intron-Distal	4.80191	6.34785	K562	KHSRP
chr11	3756985	3757041	-	intron-Distal	3.34643	6.75686	K562	HNRNPL
chr11	3712497	3712576	-	intron-Distal,intron-Proximal	3.68342	6.32052	K562	AQR
chr11	3818539	3818577	-	intron-Distal	4.60331	4.65563	K562	AQR
chr11	3799917	3800095	-	intron-Distal,intron-Proximal	3.17755	5.57010	K562	KHSRP
chr11	3756726	3756775	-	intron-Distal	3.22883	6.04536	K562	KHSRP
chr11	3756957	3757053	-	intron-Distal	3.90198	5.84692	HepG2	HNRNPL
chr11	3718992	3719055	-	intron-Distal	4.37698	5.88730	HepG2	HNRNPC
chr11	3793273	3793387	-	intron-Distal	3.21274	4.13575	K562	KHSRP
chr11	3765881	3765894	-	intron-Distal,intron-Proximal	5.21375	9.06910	K562	U2AF2
chr11	3771930	3771982	-	intron-Distal	4.00489	3.06194	K562	ILF3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for NUP98 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NUP98 is not available on ENCORE database.
88 RBPs can affect the levels of NUP98.

The Knockdown/knockout RNA-Seq assay for NUP98 is not available on ENCORE database.

88 RBPs can affect the gene expression of NUP98 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NUP98	ENSG00000110713.11	2920.03300	3746.70790	-0.35960	6.95040	5.94240	HepG2	AUH
NUP98	ENSG00000110713.11	1385.11010	1928.85350	-0.47770	4.05370	2.98550	HepG2	BCLAF1
NUP98	ENSG00000110713.11	1802.74130	2242.65190	-0.31500	2.70700	1.48950	HepG2	BUD13
NUP98	ENSG00000110713.11	2052.23960	2523.71220	-0.29830	3.14540	2.32740	HepG2	CALR
NUP98	ENSG00000110713.11	2827.85020	3634.00510	-0.36190	2.23310	1.36490	HepG2	CCAR1
NUP98	ENSG00000110713.11	1934.48440	2384.31660	-0.30160	5.37490	4.50430	HepG2	CKAP4
NUP98	ENSG00000110713.11	1471.06960	2096.79550	-0.51130	2.90410	2.12030	HepG2	CNOT7
NUP98	ENSG00000110713.11	1592.82170	2334.08440	-0.55130	6.48460	5.46490	HepG2	CPSF6
NUP98	ENSG00000110713.11	1861.35900	2341.28380	-0.33090	3.55590	2.39970	HepG2	YBX3
NUP98	ENSG00000110713.11	2561.63080	2948.23660	-0.20280	2.11550	1.54150	HepG2	CELF1
NUP98	ENSG00000110713.11	2634.52050	3170.01620	-0.26690	4.90440	3.95920	HepG2	DAZAP1
NUP98	ENSG00000110713.11	1783.45890	2344.53930	-0.39460	5.67000	4.06500	HepG2	DDX1
NUP98	ENSG00000110713.11	1573.92290	2182.65880	-0.47170	3.86580	2.96700	HepG2	DDX55
NUP98	ENSG00000110713.11	1820.80900	2217.34040	-0.28430	2.32100	1.42530	HepG2	DHX30
NUP98	ENSG00000110713.11	1812.68100	2281.65160	-0.33200	4.98640	4.12660	HepG2	DKC1
NUP98	ENSG00000110713.11	1916.79670	2298.94940	-0.26230	2.94470	2.22310	HepG2	DNAJC21
NUP98	ENSG00000110713.11	1564.52380	2278.67200	-0.54250	15.20200	13.79760	HepG2	DNAJC2
NUP98	ENSG00000110713.11	1561.84040	2082.01990	-0.41470	3.38680	2.73520	HepG2	EIF2S1
NUP98	ENSG00000110713.11	2075.22850	2995.90560	-0.52970	6.40220	5.18560	HepG2	EIF4G2
NUP98	ENSG00000110713.11	3588.02490	4301.71310	-0.26170	4.28480	3.56460	HepG2	ETF1
NUP98	ENSG00000110713.11	1148.62740	1445.61560	-0.33180	3.14630	1.88810	HepG2	FAM120A
NUP98	ENSG00000110713.11	2862.42410	2321.43740	0.30210	2.11760	1.50900	HepG2	FXR1
NUP98	ENSG00000110713.11	2078.90760	2645.79970	-0.34790	2.45710	1.85010	HepG2	GPKOW
NUP98	ENSG00000110713.11	2326.94490	2913.36560	-0.32420	5.03130	3.83410	HepG2	HNRNPA2B1
NUP98	ENSG00000110713.11	1626.01750	2581.66240	-0.66700	10.30890	9.04610	HepG2	HNRNPC
NUP98	ENSG00000110713.11	2368.15950	3264.77080	-0.46320	10.66080	9.37220	HepG2	HNRNPF
NUP98	ENSG00000110713.11	2616.96000	2180.53410	0.26310	1.93030	1.34140	HepG2	HNRNPK
NUP98	ENSG00000110713.11	2142.38960	2887.62340	-0.43070	11.25570	9.97800	HepG2	HNRNPL
NUP98	ENSG00000110713.11	1934.89480	2524.94140	-0.38400	3.34820	2.66250	HepG2	HNRNPLL
NUP98	ENSG00000110713.11	1697.00510	2564.59340	-0.59570	15.67890	14.33130	HepG2	HNRNPU
NUP98	ENSG00000110713.11	2430.48490	3214.84920	-0.40350	5.79680	4.78830	HepG2	IGF2BP1
NUP98	ENSG00000110713.11	1717.11500	2189.01380	-0.35030	2.63550	1.97440	HepG2	IGF2BP2
NUP98	ENSG00000110713.11	1823.58600	2619.64590	-0.52260	16.28020	14.67400	HepG2	ILF2
NUP98	ENSG00000110713.11	2029.28190	2446.34850	-0.26970	2.07130	1.36660	HepG2	MSI2
NUP98	ENSG00000110713.11	1938.93990	2575.25820	-0.40940	2.16520	1.31690	HepG2	MTPAP
NUP98	ENSG00000110713.11	1643.82590	2054.08240	-0.32140	2.67450	1.47860	HepG2	NAA15
NUP98	ENSG00000110713.11	1446.55150	1845.13750	-0.35110	3.10830	1.60870	HepG2	NIP7
NUP98	ENSG00000110713.11	2346.35760	3143.38490	-0.42190	6.47320	5.31070	HepG2	NOL12
NUP98	ENSG00000110713.11	1712.88060	2238.89200	-0.38640	3.65640	2.79680	HepG2	NSUN2
NUP98	ENSG00000110713.11	2068.40240	2538.49880	-0.29550	4.23580	3.21470	HepG2	PARN
NUP98	ENSG00000110713.11	2570.51530	2165.80880	0.24710	3.21550	2.57050	HepG2	PCBP1
NUP98	ENSG00000110713.11	1418.27680	1957.67850	-0.46500	3.48150	1.60160	HepG2	PHF6
NUP98	ENSG00000110713.11	1692.26600	2287.41100	-0.43480	6.92010	5.79570	HepG2	PPIL4
NUP98	ENSG00000110713.11	1221.84860	1683.56080	-0.46250	4.00810	3.05870	HepG2	PRPF8
NUP98	ENSG00000110713.11	2399.86700	3000.65310	-0.32230	3.15500	2.52500	HepG2	PUF60
NUP98	ENSG00000110713.11	1992.67440	2429.12250	-0.28570	4.52310	3.77200	HepG2	PUS1
NUP98	ENSG00000110713.11	2800.17020	2386.75830	0.23040	2.25320	1.67940	HepG2	QKI
NUP98	ENSG00000110713.11	2555.26650	3121.49610	-0.28880	3.31060	2.38220	HepG2	RBM15
NUP98	ENSG00000110713.11	2608.28940	3595.43800	-0.46310	8.95480	8.14460	HepG2	RBM22
NUP98	ENSG00000110713.11	2777.23270	2452.60890	0.17920	1.83950	1.37880	HepG2	NELFE
NUP98	ENSG00000110713.11	2064.19340	3517.22900	-0.76890	14.84100	13.49600	HepG2	RPLP0
NUP98	ENSG00000110713.11	1594.38010	2105.60900	-0.40120	2.37750	1.63280	HepG2	RPS3A
NUP98	ENSG00000110713.11	1331.25170	1665.37200	-0.32310	2.03120	1.34780	HepG2	RRP9
NUP98	ENSG00000110713.11	1591.44760	2283.87930	-0.52110	12.94710	11.70450	HepG2	SAFB2
NUP98	ENSG00000110713.11	4134.85930	2980.79350	0.47200	2.11480	1.52380	HepG2	SF3A3
NUP98	ENSG00000110713.11	2656.46130	2294.42970	0.21130	2.44500	1.88450	HepG2	SF3B4
NUP98	ENSG00000110713.11	2352.74620	2877.19950	-0.29030	5.30890	4.38960	HepG2	SLBP
NUP98	ENSG00000110713.11	2149.31770	2663.38160	-0.30940	6.38500	5.47180	HepG2	SMN1
NUP98	ENSG00000110713.11	3642.89770	4060.91820	-0.15670	1.95840	1.51530	HepG2	SRFBP1
NUP98	ENSG00000110713.11	3766.21780	2394.88950	0.65310	21.83820	20.77940	HepG2	SRSF1
NUP98	ENSG00000110713.11	2157.24510	3207.59200	-0.57230	15.90810	14.47860	HepG2	SRSF7
NUP98	ENSG00000110713.11	2884.91060	3525.84420	-0.28940	4.96020	4.31250	HepG2	SSB
NUP98	ENSG00000110713.11	1608.97820	2041.06150	-0.34320	3.16680	2.16730	HepG2	SUPT6H
NUP98	ENSG00000110713.11	1244.42820	2172.74980	-0.80400	10.16200	9.00080	HepG2	SUPV3L1
NUP98	ENSG00000110713.11	2466.95300	2152.62430	0.19650	1.83410	1.35970	HepG2	TAF15
NUP98	ENSG00000110713.11	1871.14990	2461.21330	-0.39540	3.82700	2.98950	HepG2	TARDBP
NUP98	ENSG00000110713.11	1134.23500	2491.95290	-1.13560	34.49330	33.08810	HepG2	TIAL1
NUP98	ENSG00000110713.11	1695.20530	2514.26010	-0.56870	14.36110	13.21770	HepG2	TRIM56
NUP98	ENSG00000110713.11	2472.61380	3103.01410	-0.32760	2.29200	1.53570	HepG2	UBE2L3
NUP98	ENSG00000110713.11	773.19010	1283.47370	-0.73120	8.47160	7.14600	HepG2	UCHL5
NUP98	ENSG00000110713.11	2234.02530	2643.50940	-0.24280	3.34470	2.58920	HepG2	UPF1
NUP98	ENSG00000110713.11	1379.52070	1989.43280	-0.52820	3.64440	2.47990	HepG2	UPF2
NUP98	ENSG00000110713.11	1425.50150	2138.83550	-0.58540	6.52110	5.42390	HepG2	XRN2
NUP98	ENSG00000110713.11	2053.58470	2723.24420	-0.40720	9.55210	8.43020	HepG2	ZC3H8
NUP98	ENSG00000110713.11	2366.14590	2934.75350	-0.31070	2.44490	1.46480	K562	CCAR1
NUP98	ENSG00000110713.11	8905.18300	7749.90070	0.20040	2.83040	2.17130	K562	DDX47
NUP98	ENSG00000110713.11	4867.38020	6171.44950	-0.34250	6.12460	5.11790	K562	EIF2S2
NUP98	ENSG00000110713.11	3515.48460	4305.92820	-0.29260	2.66690	1.86180	K562	EIF4A3
NUP98	ENSG00000110713.11	4209.95670	6385.95660	-0.60110	9.52090	7.84240	K562	FIP1L1
NUP98	ENSG00000110713.11	5386.33530	4477.98330	0.26640	3.94190	3.23860	K562	FXR1
NUP98	ENSG00000110713.11	5213.17530	8224.01850	-0.65770	13.58970	11.89620	K562	GRSF1
NUP98	ENSG00000110713.11	2968.96600	4437.66890	-0.57980	10.05010	8.96930	K562	HNRNPC
NUP98	ENSG00000110713.11	5713.58330	8658.04560	-0.59960	9.41470	7.96760	K562	HSPD1
NUP98	ENSG00000110713.11	4538.67760	5338.14890	-0.23410	2.17680	1.36810	K562	MATR3
NUP98	ENSG00000110713.11	4808.23530	5967.54750	-0.31160	6.62400	5.42210	K562	MTPAP
NUP98	ENSG00000110713.11	5346.34270	6623.10320	-0.30900	2.37740	1.60810	K562	PCBP3
NUP98	ENSG00000110713.11	3337.67340	4332.38000	-0.37630	3.80200	2.08650	K562	PHF6
NUP98	ENSG00000110713.11	4205.40160	5080.13610	-0.27260	2.94570	2.11780	K562	POLR2G
NUP98	ENSG00000110713.11	4871.34900	7249.27830	-0.57350	8.15200	6.56910	K562	PPIG
NUP98	ENSG00000110713.11	2924.30290	3978.77620	-0.44420	5.58710	4.23220	K562	PSIP1
NUP98	ENSG00000110713.11	8843.70300	10880.10080	-0.29900	4.67930	3.41970	K562	PUM2
NUP98	ENSG00000110713.11	5325.70740	4354.43480	0.29040	3.40310	2.45180	K562	SF3B4
NUP98	ENSG00000110713.11	6542.56010	4270.72530	0.61530	2.41950	1.30370	K562	SNRNP200
NUP98	ENSG00000110713.11	6054.08200	5095.52250	0.24860	2.74760	1.93090	K562	SYNCRIP
NUP98	ENSG00000110713.11	3980.40630	5156.22520	-0.37340	3.58300	2.77390	K562	TARDBP
NUP98	ENSG00000110713.11	3501.63730	4324.20130	-0.30440	2.39890	1.45730	K562	UCHL5
NUP98	ENSG00000110713.11	5927.21430	7030.38450	-0.24620	4.51950	3.62500	K562	UPF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NUP98 is not available on ENCORE database.

30 RBPs can affect the splicing of NUP98 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	NUP98	ENSG00000110713.11	chr11	-	3707202	3707424			3704429	3704671	3712576	3712719	0.09100	0.00031	0.00801	included	K562	SRSF1
SE	NUP98	ENSG00000110713.11	chr11	-	3794861	3794969			3792977	3793158	3797111	3797251	-0.09600	0.00006	0.00190	excluded	K562	SF3B4
SE	NUP98	ENSG00000110713.11	chr11	-	3707202	3707424			3704429	3704671	3712576	3712719	-0.16800	0.00003	0.00110	excluded	K562	SF3B4
SE	NUP98	ENSG00000110713.11	chr11	-	3721839	3722069			3720311	3720578	3723692	3724122	-0.09900	0.00004	0.00498	excluded	HepG2	RBM22
SE	NUP98	ENSG00000110713.11	chr11	-	3721839	3722069			3720311	3720578	3723692	3724122	-0.10200	0.00000	0.00001	excluded	K562	AKAP8L
SE	NUP98	ENSG00000110713.11	chr11	-	3707293	3707424			3704429	3704671	3712576	3712719	0.20900	0.00088	0.08585	included	K562	FMR1
SE	NUP98	ENSG00000110713.11	chr11	-	3707202	3707424			3704429	3704671	3712576	3712719	0.23600	0.00302	0.03528	included	HepG2	U2AF2
SE	NUP98	ENSG00000110713.11	chr11	-	3733793	3734038			3727674	3727857	3735047	3735269	-0.09300	0.00044	0.00611	excluded	K562	AQR
SE	NUP98	ENSG00000110713.11	chr11	-	3765738	3765879			3756420	3756554	3774545	3774638	-0.11800	0.00026	0.00393	excluded	K562	AQR
SE	NUP98	ENSG00000110713.11	chr11	-	3721839	3722069			3720311	3720578	3723692	3723788	-0.11300	0.00000	0.00001	excluded	K562	AQR
SE	NUP98	ENSG00000110713.11	chr11	-	3707202	3707424			3704429	3704671	3712576	3712719	0.05900	0.00447	0.05706	included	K562	PUS1
SE	NUP98	ENSG00000110713.11	chr11	-	3781768	3781856			3774545	3774638	3784131	3784163	-0.10500	0.00005	0.00133	excluded	K562	PUS1
SE	NUP98	ENSG00000110713.11	chr11	-	3765738	3765879			3756420	3756554	3774545	3774638	-0.07100	0.00728	0.08251	excluded	K562	PUS1
SE	NUP98	ENSG00000110713.11	chr11	-	3721839	3722069			3720311	3720578	3723692	3724122	-0.10400	0.00000	0.00000	excluded	K562	PUS1
SE	NUP98	ENSG00000110713.11	chr11	-	3707202	3707424			3704429	3704671	3712576	3712719	0.21200	0.00267	0.09140	included	HepG2	SFPQ
SE	NUP98	ENSG00000110713.11	chr11	-	3721839	3722069			3720311	3720578	3723692	3724122	-0.08900	0.00001	0.01153	excluded	K562	BUD13
SE	NUP98	ENSG00000110713.11	chr11	-	3707202	3707424			3704429	3704671	3712576	3712719	0.12100	0.00001	0.00179	included	K562	EFTUD2
SE	NUP98	ENSG00000110713.11	chr11	-	3721839	3722069			3720311	3720578	3723692	3724122	-0.06900	0.00148	0.03080	excluded	K562	U2AF1
SE	NUP98	ENSG00000110713.11	chr11	-	3765738	3765879			3756420	3756554	3774545	3774638	-0.09300	0.00005	0.00576	excluded	K562	HNRNPL
SE	NUP98	ENSG00000110713.11	chr11	-	3707293	3707424			3704429	3704671	3712576	3712719	0.35700	0.00094	0.09285	included	HepG2	HNRNPUL1
SE	NUP98	ENSG00000110713.11	chr11	-	3721839	3722069			3720311	3720578	3723692	3724122	-0.13400	0.00037	0.01392	excluded	HepG2	SF3A3
SE	NUP98	ENSG00000110713.11	chr11	-	3707202	3707424			3704429	3704671	3712576	3712719	0.15100	0.00005	0.00839	included	K562	HNRNPUL1
SE	NUP98	ENSG00000110713.11	chr11	-	3721839	3722069			3720311	3720578	3723692	3724122	-0.07700	0.00070	0.05069	excluded	K562	HNRNPUL1
SE	NUP98	ENSG00000110713.11	chr11	-	3765738	3765879			3756420	3756554	3774545	3774638	0.13200	0.00056	0.04279	included	HepG2	TIAL1
SE	NUP98	ENSG00000110713.11	chr11	-	3707202	3707424			3704429	3704671	3712576	3712719	0.24700	0.00102	0.09240	included	HepG2	RBFOX2
SE	NUP98	ENSG00000110713.11	chr11	-	3781768	3781856			3774545	3774638	3784131	3784163	-0.14300	0.00000	0.00001	excluded	K562	UTP18
SE	NUP98	ENSG00000110713.11	chr11	-	3721839	3722069			3720311	3720578	3723692	3724122	-0.07800	0.00002	0.00136	excluded	K562	UTP18
SE	NUP98	ENSG00000110713.11	chr11	-	3721839	3722069			3720311	3720578	3723692	3724122	-0.14500	0.00000	0.00000	excluded	K562	U2AF2
SE	NUP98	ENSG00000110713.11	chr11	-	3707293	3707424			3704429	3704671	3712576	3712719	0.09500	0.00341	0.09488	included	K562	HNRNPU
SE	NUP98	ENSG00000110713.11	chr11	-	3781768	3781856			3774545	3774638	3784131	3784163	-0.07500	0.00078	0.02275	excluded	K562	RBM15
SE	NUP98	ENSG00000110713.11	chr11	-	3721839	3722069			3720311	3720578	3723692	3724122	-0.10400	0.00000	0.00001	excluded	K562	RBM15
SE	NUP98	ENSG00000110713.11	chr11	-	3721839	3722069			3720311	3720578	3723692	3724122	-0.07500	0.00002	0.00116	excluded	K562	AGGF1
SE	NUP98	ENSG00000110713.11	chr11	-	3707202	3707424			3704429	3704671	3712576	3712719	0.13000	0.00080	0.07612	included	K562	CPSF6
SE	NUP98	ENSG00000110713.11	chr11	-	3707202	3707424			3704429	3704671	3712576	3712719	-0.20600	0.00000	0.00004	excluded	K562	HNRNPK
SE	NUP98	ENSG00000110713.11	chr11	-	3721839	3722069			3720311	3720578	3723692	3724122	-0.20900	0.00002	0.00130	excluded	HepG2	HNRNPC
SE	NUP98	ENSG00000110713.11	chr11	-	3707202	3707424			3704429	3704671	3712576	3712719	0.15300	0.00008	0.02404	included	K562	NPM1
SE	NUP98	ENSG00000110713.11	chr11	-	3765738	3765879			3756420	3756554	3774545	3774638	-0.14800	0.00002	0.00054	excluded	K562	HNRNPC
SE	NUP98	ENSG00000110713.11	chr11	-	3721839	3722069			3720311	3720578	3723692	3724122	-0.27700	0.00000	0.00000	excluded	K562	HNRNPC
A3SS	NUP98	ENSG00000110713.11	chr11	-	3765738	3765948			3765738	3765879	3774545	3774638	0.06900	0.00000	0.00000	longer	K562	AQR
A3SS	NUP98	ENSG00000110713.11	chr11	-	3803271	3803506			3803271	3803375	3818629	3818771	0.09900	0.00000	0.00000	longer	K562	AQR
A3SS	NUP98	ENSG00000110713.11	chr11	-	3700783	3700967			3700783	3700938	3704429	3704577	0.10900	0.00000	0.00000	longer	K562	AQR
A3SS	NUP98	ENSG00000110713.11	chr11	-	3733793	3734038			3733793	3733958	3735047	3735225	0.10500	0.00000	0.00000	longer	K562	AQR
A3SS	NUP98	ENSG00000110713.11	chr11	-	3724001	3724171			3724001	3724122	3726429	3726586	0.18800	0.00000	0.00000	longer	K562	AQR
A3SS	NUP98	ENSG00000110713.11	chr11	-	3726429	3726601			3726429	3726586	3727674	3727857	0.08500	0.00001	0.00013	longer	K562	AQR
A5SS	NUP98	ENSG00000110713.11	chr11	-	3781717	3781856			3781768	3781856	3774545	3774638	0.25900	0.00002	0.00155	longer	HepG2	U2AF2
A5SS	NUP98	ENSG00000110713.11	chr11	-	3781717	3781856			3781768	3781856	3774545	3774638	0.11400	0.00138	0.09786	longer	K562	FXR1
A5SS	NUP98	ENSG00000110713.11	chr11	-	3792977	3793158			3793004	3793158	3789810	3789974	-0.09400	0.00067	0.06634	shorter	K562	EFTUD2
A5SS	NUP98	ENSG00000110713.11	chr11	-	3781717	3781856			3781768	3781856	3774545	3774638	0.24000	0.00002	0.00344	longer	HepG2	U2AF1
MXE	NUP98	ENSG00000110713.11	chr11	-	3700783	3700938	3704429	3704671	3697738	3697850	3712576	3712719	-0.24100	0.00508	0.05548	2included	K562	DROSHA
MXE	NUP98	ENSG00000110713.11	chr11	-	3723692	3724122	3726429	3726601	3721839	3722069	3727674	3727857	0.05400	0.00000	0.00004	1included	K562	AQR
MXE	NUP98	ENSG00000110713.11	chr11	-	3723692	3724122	3726429	3726586	3721839	3722069	3727674	3727857	0.09400	0.00924	0.05935	1included	K562	AQR
MXE	NUP98	ENSG00000110713.11	chr11	-	3721839	3722069	3723692	3723788	3720311	3720578	3724001	3724122	0.10100	0.00001	0.00017	1included	K562	AQR
MXE	NUP98	ENSG00000110713.11	chr11	-	3800385	3800487	3803271	3803375	3800102	3800279	3818629	3818771	-0.10400	0.00268	0.02128	2included	K562	AQR
MXE	NUP98	ENSG00000110713.11	chr11	-	3707202	3707424	3712576	3712719	3704429	3704671	3714461	3714605	-0.13100	0.00251	0.05490	2included	K562	TARDBP
MXE	NUP98	ENSG00000110713.11	chr11	-	3700783	3700938	3704429	3704671	3697738	3697850	3712576	3712719	0.14900	0.00117	0.04212	1included	HepG2	NCBP2
MXE	NUP98	ENSG00000110713.11	chr11	-	3700783	3700938	3704429	3704671	3697738	3697850	3712576	3712719	0.18900	0.00074	0.01586	1included	K562	SF3B4
MXE	NUP98	ENSG00000110713.11	chr11	-	3781717	3781856	3784131	3784269	3774545	3774638	3789810	3789974	-0.07100	0.00514	0.07624	2included	K562	PRPF8
MXE	NUP98	ENSG00000110713.11	chr11	-	3700783	3700938	3704429	3704671	3697738	3697850	3712576	3712719	-0.27600	0.00096	0.02278	2included	K562	HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NUP98

General Information

Functions

Localization

Domains (AlphaFold: NUP98)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NUP98 is not avaliable on ENCORE database.

39 proteins are bound to NUP98 RNA:

eCLIP assay for NUP98 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NUP98 is not available on ENCORE database.

88 RBPs can affect the gene expression of NUP98 :

The Knockdown/knockout RNA-Seq assay for NUP98 is not available on ENCORE database.

30 RBPs can affect the splicing of NUP98 :

The Knockdown/knockout RNA-Seq assay for NUP98 is not avaliable on ENCORE database.