HCFC1R1

General Information

Gene Name       : HCFC1R1
Gene ID             : ENSG00000103145.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HCFC1R1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HCFC1R1ENSG00000103145.103.047.865.45ENCSR000AEF
HepG2HCFC1R1ENSG00000103145.1015.725.9210.82ENCSR985KAT
K562HCFC1R1ENSG00000103145.1022.5710.4916.53ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HCFC1R1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HCFC1R1 RNA is bound by 9 proteins.  







eCLIP assay for HCFC1R1 is not avaliable on ENCORE database.





9 proteins are bound to HCFC1R1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1630728063072880-3'-UTR,CDS,intron-Distal,intron-Proximal3.579496.89080HepG2LARP4
chr1630728023072883-3'-UTR,CDS,intron-Distal,intron-Proximal4.9813023.19430K562PABPC4
chr1630727183072809-3'-UTR,intron-Distal,intron-Proximal3.373944.29172K562YBX3
chr1630741423074257-5'-UTR,intron-Distal,intron-Proximal4.9091713.05315K562DDX3X
chr1630728783072975-CDS,intron-Distal,intron-Proximal4.609566.58817K562IGF2BP2
chr1630738103073860-CDS,intron-Distal,intron-Proximal4.799315.01842HepG2PRPF8
chr1630732353073303-CDS,intron-Distal3.584753.50122K562DDX55
chr1630733113073420-CDS,intron-Distal,intron-Proximal4.8873718.21561K562AQR
chr1630738003073848-intron-Distal,intron-Proximal5.8226411.56697K562AQR
chr1630736833073732-intron-Distal4.860594.65563K562AQR
chr1630736543073763-intron-Distal,intron-Proximal4.530595.29549HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HCFC1R1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HCFC1R1 is not available on ENCORE database.

  • 84 RBPs can affect the levels of HCFC1R1.  








The Knockdown/knockout RNA-Seq assay for HCFC1R1 is not available on ENCORE database.





84 RBPs can affect the gene expression of HCFC1R1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HCFC1R1ENSG00000103145.655.0594099.51280-0.853902.409101.40500HepG2AATF
HCFC1R1ENSG00000103145.6280.76940185.618900.596902.351201.85650HepG2AKAP1
HCFC1R1ENSG00000103145.6448.86060204.468101.134303.528702.35900HepG2AKAP8
HCFC1R1ENSG00000103145.6144.26120223.36210-0.630702.964902.16840HepG2CALR
HCFC1R1ENSG00000103145.6733.72300401.033000.871403.571902.44940HepG2CCAR1
HCFC1R1ENSG00000103145.6208.16940296.70490-0.511302.249701.62090HepG2CPSF6
HCFC1R1ENSG00000103145.6448.03510325.454900.461102.474201.43060HepG2CPSF7
HCFC1R1ENSG00000103145.665.20750107.42800-0.720302.095301.31100HepG2DDX24
HCFC1R1ENSG00000103145.6227.54070133.425100.770004.064602.45170HepG2DDX52
HCFC1R1ENSG00000103145.6168.52410336.93030-0.999504.878303.59430HepG2DDX59
HCFC1R1ENSG00000103145.6195.83240296.37250-0.597803.106202.04250HepG2DDX5
HCFC1R1ENSG00000103145.6537.92340152.794301.8157022.3728020.84380HepG2DDX6
HCFC1R1ENSG00000103145.6264.67720114.745801.205707.797906.66510HepG2DNAJC21
HCFC1R1ENSG00000103145.651.99920101.08420-0.959002.941701.79480HepG2AGO1
HCFC1R1ENSG00000103145.6357.10340146.802301.282403.140802.51050HepG2EIF2S1
HCFC1R1ENSG00000103145.6143.34680272.01880-0.924204.869802.45790HepG2EIF3H
HCFC1R1ENSG00000103145.6235.61340162.193800.538602.033501.48290HepG2EIF4A3
HCFC1R1ENSG00000103145.678.39600199.24850-1.345708.823907.48830HepG2EIF4G1
HCFC1R1ENSG00000103145.6183.87100285.77990-0.636204.458903.72880HepG2ETF1
HCFC1R1ENSG00000103145.6156.19010297.21410-0.928203.015501.95370HepG2FTO
HCFC1R1ENSG00000103145.6130.93950188.14170-0.522902.080701.39150HepG2FUBP3
HCFC1R1ENSG00000103145.6285.06500163.767700.799504.403303.54500HepG2FXR1
HCFC1R1ENSG00000103145.6259.14570151.854900.771002.744102.08110HepG2G3BP1
HCFC1R1ENSG00000103145.6529.12100336.337300.653604.263703.48100HepG2GPKOW
HCFC1R1ENSG00000103145.6171.05290115.845100.562101.948001.39450HepG2HNRNPA1
HCFC1R1ENSG00000103145.6258.18210153.915400.746203.703802.90480HepG2HNRNPK
HCFC1R1ENSG00000103145.6259.04520154.334600.747003.680602.91020HepG2IGF2BP2
HCFC1R1ENSG00000103145.6222.54320130.753600.767105.109104.13910HepG2ILF2
HCFC1R1ENSG00000103145.6275.44190168.586800.708202.529401.92190HepG2NCBP2
HCFC1R1ENSG00000103145.6312.69150200.219800.643104.671903.68130HepG2NOL12
HCFC1R1ENSG00000103145.6214.6352098.680801.120904.767802.90660HepG2NOLC1
HCFC1R1ENSG00000103145.6168.29390106.833400.655502.630501.43280HepG2PKM
HCFC1R1ENSG00000103145.6221.80630114.170800.958006.618705.51620HepG2PPIL4
HCFC1R1ENSG00000103145.6153.05080225.82590-0.561202.888302.10070HepG2PRPF4
HCFC1R1ENSG00000103145.633.2804090.78740-1.447804.834303.79910HepG2PRPF8
HCFC1R1ENSG00000103145.6566.73600432.125100.391102.736101.88300HepG2RBM15
HCFC1R1ENSG00000103145.6296.48200197.216500.588103.435702.84630HepG2NELFE
HCFC1R1ENSG00000103145.630.5176089.80290-1.557105.085404.05330HepG2RRP9
HCFC1R1ENSG00000103145.6183.05960113.994000.683303.388102.68780HepG2SAFB2
HCFC1R1ENSG00000103145.6316.76430128.396401.302703.870302.20570HepG2SF1
HCFC1R1ENSG00000103145.6169.00380317.69930-0.910606.209005.18710HepG2SF3B1
HCFC1R1ENSG00000103145.6371.37860124.672801.574605.082303.02420HepG2SFPQ
HCFC1R1ENSG00000103145.6234.03890132.934400.815905.493404.63900HepG2SMN1
HCFC1R1ENSG00000103145.6276.87340114.827101.269703.968202.32890HepG2SNRNP200
HCFC1R1ENSG00000103145.6191.61650353.49640-0.883504.506003.49800HepG2SNRNP70
HCFC1R1ENSG00000103145.6170.03010269.77600-0.666004.614404.01570HepG2SRFBP1
HCFC1R1ENSG00000103145.6334.75240214.639500.641105.288404.47740HepG2SUCLG1
HCFC1R1ENSG00000103145.6298.20420133.465901.159703.063602.02380HepG2U2AF2
HCFC1R1ENSG00000103145.6302.77840231.140000.389401.940201.42040HepG2UTP3
HCFC1R1ENSG00000103145.6209.76590115.375600.862303.285602.50020HepG2XRN2
HCFC1R1ENSG00000103145.6524.21620263.525600.9921010.588809.57380K562AGGF1
HCFC1R1ENSG00000103145.6493.40220289.571800.768707.007105.26600K562AKAP8
HCFC1R1ENSG00000103145.6552.40590274.209601.010308.826407.58670K562AKAP8L
HCFC1R1ENSG00000103145.6168.43290110.580500.607002.295201.42290K562BCLAF1
HCFC1R1ENSG00000103145.6464.29760154.374501.5885012.390909.66470K562CCAR1
HCFC1R1ENSG00000103145.6356.15460257.450100.468102.988101.72960K562DDX21
HCFC1R1ENSG00000103145.6223.32270141.160000.661703.448602.26940K562DDX3X
HCFC1R1ENSG00000103145.6227.81890143.116900.670603.821402.21430K562DDX6
HCFC1R1ENSG00000103145.6392.77460172.855301.184008.823506.29760K562DHX30
HCFC1R1ENSG00000103145.6320.24300203.880900.651302.999701.68070K562EXOSC5
HCFC1R1ENSG00000103145.6348.08200251.252700.470202.373601.63610K562GPKOW
HCFC1R1ENSG00000103145.6394.89770215.223200.875503.348502.52010K562GRSF1
HCFC1R1ENSG00000103145.6347.44000238.314300.543803.652702.62570K562HNRNPU
HCFC1R1ENSG00000103145.6173.4889068.049901.350104.883603.35630K562IGF2BP2
HCFC1R1ENSG00000103145.6427.31890291.007400.554203.309302.39850K562KIF1C
HCFC1R1ENSG00000103145.6241.89060138.363000.805803.320101.67950K562LIN28B
HCFC1R1ENSG00000103145.6416.91560278.563700.581603.474502.22510K562MAK16
HCFC1R1ENSG00000103145.6118.2216071.320600.729002.547901.66610K562MATR3
HCFC1R1ENSG00000103145.6505.67800326.001500.633205.277103.93670K562MBNL1
HCFC1R1ENSG00000103145.6391.29190293.619600.414202.731001.92730K562MTPAP
HCFC1R1ENSG00000103145.6471.82040326.218400.532304.849703.90010K562NSUN2
HCFC1R1ENSG00000103145.6470.30830192.218101.290807.168705.32130K562PABPN1
HCFC1R1ENSG00000103145.6216.83740133.141400.703603.135801.60090K562PHF6
HCFC1R1ENSG00000103145.6433.80210228.534200.924503.758601.96820K562PPP1R8
HCFC1R1ENSG00000103145.6261.84850122.255401.098706.804905.27680K562PSIP1
HCFC1R1ENSG00000103145.6391.73740282.778000.470102.806001.84030K562PUM2
HCFC1R1ENSG00000103145.6666.35080271.945801.2929017.5210016.19430K562PUS1
HCFC1R1ENSG00000103145.6418.72210164.745601.345705.296502.51590K562RBFOX2
HCFC1R1ENSG00000103145.6490.01300264.966000.886909.703508.61870K562RBM15
HCFC1R1ENSG00000103145.6221.99580111.593500.992205.277203.90090K562RCC2
HCFC1R1ENSG00000103145.6289.20420177.299500.705802.737901.66260K562SAFB
HCFC1R1ENSG00000103145.6277.88740169.968200.709102.681501.43880K562SLBP
HCFC1R1ENSG00000103145.6241.88090105.782301.193107.990005.98310K562SRFBP1
HCFC1R1ENSG00000103145.6285.70480114.525101.318809.937807.81200K562SRSF4
HCFC1R1ENSG00000103145.6133.9717064.311601.058704.795703.34440K562SRSF5
HCFC1R1ENSG00000103145.6149.4472068.893301.117105.463104.45190K562TARDBP
HCFC1R1ENSG00000103145.6146.3770066.458201.139105.509804.29150K562TIA1
HCFC1R1ENSG00000103145.6257.73450117.583001.132106.796705.27370K562TIAL1
HCFC1R1ENSG00000103145.6142.4656065.241201.126702.955801.81910K562TRA2A
HCFC1R1ENSG00000103145.6292.93460124.974001.228905.885504.38910K562TRIM56
HCFC1R1ENSG00000103145.6422.52060295.971300.513503.460302.48400K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HCFC1R1 is not available on ENCORE database.





18 RBPs can affect the splicing of HCFC1R1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEHCFC1R1ENSG00000103145.6chr16-307347430735313073233307336230738473073969-0.310000.000000.00000excludedHepG2U2AF1
SEHCFC1R1ENSG00000103145.6chr16-307347430735313073233307336230738473073969-0.558000.000000.00000excludedHepG2U2AF2
SEHCFC1R1ENSG00000103145.6chr16-307347430735313073233307336230738473073969-0.246000.008580.07190excludedK562AQR
SEHCFC1R1ENSG00000103145.6chr16-307347430735313073233307336230738473073969-0.226000.000090.01306excludedHepG2SRSF7
SEHCFC1R1ENSG00000103145.6chr16-307347430735313073233307336230738473074247-0.192000.004980.06202excludedK562PUS1
SEHCFC1R1ENSG00000103145.6chr16-307347430735313073233307336230738473073969-0.206000.000610.01864excludedK562RBM15
A3SSHCFC1R1ENSG00000103145.6chr16-307323330735313073233307341330738473073991-0.285000.000850.06871shorterK562AKAP8L
A3SSHCFC1R1ENSG00000103145.6chr16-3073233307339630732333073362307347430735310.310000.003860.02303longerK562AQR
RIHCFC1R1ENSG00000103145.6chr16-307323330735313073233307336230734743073531-0.263000.000000.00080excludedHepG2AKAP1
RIHCFC1R1ENSG00000103145.6chr16-307323330735313073233307336230734743073531-0.222000.000070.00837excludedHepG2DDX6
RIHCFC1R1ENSG00000103145.6chr16-3073233307396930732333073531307384730739690.185000.008030.04629includedK562PUS1
RIHCFC1R1ENSG00000103145.6chr16-3073233307353130732333073362307347430735310.264000.000000.00000includedK562PUS1
RIHCFC1R1ENSG00000103145.6chr16-307323330735313073233307336230734743073531-0.281000.000030.00474excludedHepG2DDX3X
RIHCFC1R1ENSG00000103145.6chr16-3073233307353130732333073362307347430735310.159000.000040.00347includedK562SF3B1
RIHCFC1R1ENSG00000103145.6chr16-3073233307396930732333073531307384730739690.204000.000810.00745includedHepG2U2AF2
RIHCFC1R1ENSG00000103145.6chr16-3073233307353130732333073362307347430735310.353000.000000.00000includedHepG2U2AF2
RIHCFC1R1ENSG00000103145.6chr16-307323330735313073233307336230734743073531-0.183000.000010.00821excludedHepG2DROSHA
RIHCFC1R1ENSG00000103145.6chr16-307323330735313073233307336230734743073531-0.220000.003930.06511excludedHepG2IGF2BP3
RIHCFC1R1ENSG00000103145.6chr16-307323330735313073233307336230734743073531-0.238000.000150.00747excludedHepG2MATR3
RIHCFC1R1ENSG00000103145.6chr16-3073233307396930732333073531307384730739690.082000.005480.09303includedHepG2FTO
RIHCFC1R1ENSG00000103145.6chr16-3073233307353130732333073362307347430735310.133000.001210.03007includedHepG2FTO
RIHCFC1R1ENSG00000103145.6chr16-3073233307353130732333073362307347430735310.265000.009570.07420includedHepG2TAF15
RIHCFC1R1ENSG00000103145.6chr16-3073233307353130732333073362307347430735310.215000.000000.00000includedHepG2U2AF1
RIHCFC1R1ENSG00000103145.6chr16-307323330735313073233307336230734743073531-0.200000.001790.02270excludedHepG2NCBP2
RIHCFC1R1ENSG00000103145.6chr16-3073233307353130732333073362307347430735310.139000.006470.06338includedK562UTP18
RIHCFC1R1ENSG00000103145.6chr16-3073233307353130732333073362307347430735310.150000.000690.08576includedHepG2SRSF7
RIHCFC1R1ENSG00000103145.6chr16-3073233307353130732333073362307347430735310.362000.000250.00190includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for HCFC1R1 is not avaliable on ENCORE database.