GFI1B

General Information

Gene Name       : GFI1B
Gene ID             : ENSG00000165702.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GFI1B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GFI1BENSG00000165702.140.000.030.01ENCSR000AEF
HepG2GFI1BENSG00000165702.140.170.140.16ENCSR985KAT
K562GFI1BENSG00000165702.1452.9534.8243.89ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GFI1B is not avaliable on ENCORE database.



Proteins bound to RNA
  • GFI1B RNA is bound by 10 proteins.  







eCLIP assay for GFI1B is not avaliable on ENCORE database.





10 proteins are bound to GFI1B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9135866832135866899+3'-UTR3.4474112.21438K562UPF1
chr9135866482135866525+3'-UTR3.263016.40723K562YBX3
chr9135866899135866955+3'-UTR4.3964713.10292K562UPF1
chr9135866623135866714+3'-UTR3.363688.77718K562UPF1
chr9135866750135866832+3'-UTR3.726109.43144K562UPF1
chr9135866955135867023+3'-UTR3.362889.95554K562UPF1
chr9135866821135866837+3'-UTR4.599086.26929K562YBX3
chr9135865293135865300+CDS,intron-Proximal4.5584312.08233K562AQR
chr9135866229135866298+CDS,intron-Proximal4.6324813.62974K562AQR
chr9135864584135864592+CDS,intron-Distal,intron-Proximal4.0273110.89879K562AQR
chr9135866246135866306+CDS,intron-Proximal3.275873.91614K562BUD13
chr9135862616135862750+CDS,intron-Proximal4.097213.15719K562SMNDC1
chr9135865888135865966+intron-Distal3.790366.71321K562HNRNPL
chr9135864592135864630+intron-Distal,intron-Proximal4.0529513.89524K562AQR
chr9135865898135865996+intron-Distal3.832333.06644K562GTF2F1
chr9135865887135865989+intron-Distal5.8430535.83952K562AGGF1
chr9135865744135865783+intron-Distal5.506699.64281K562AGGF1
chr9135865358135865402+intron-Distal,intron-Proximal4.419624.58968K562PRPF8
chr9135865741135865788+intron-Distal4.083174.50052K562HNRNPL
chr9135862839135862921+intron-Distal,intron-Proximal3.808434.35635K562PRPF8
chr9135862166135862190+intron-Proximal4.831154.09264K562AQR
chr9135854259135854318+intron-Proximal4.574754.68673K562RBM22
chr9135862810135862848+intron-Proximal6.2396415.72370K562AQR
chr9135862806135862810+intron-Proximal6.0143112.46873K562AQR
chr9135865108135865128+intron-Proximal5.172064.86944K562AQR
chr9135865300135865367+intron-Proximal5.1061619.12147K562AQR
chr9135863855135863908+intron-Proximal4.353347.15298K562AQR
chr9135862190135862207+intron-Proximal4.784594.09264K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GFI1B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GFI1B is not available on ENCORE database.

  • 93 RBPs can affect the levels of GFI1B.  








The Knockdown/knockout RNA-Seq assay for GFI1B is not available on ENCORE database.





93 RBPs can affect the gene expression of GFI1B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GFI1BENSG00000165702.80.0000014.34300-99999.999994.425903.76900HepG2PTBP1
GFI1BENSG00000165702.815.335102.366002.696202.175101.63770HepG2PUF60
GFI1BENSG00000165702.82.2825015.54350-2.767602.438101.84600HepG2QKI
GFI1BENSG00000165702.81.5106014.10310-3.222902.606501.94910HepG2RBM25
GFI1BENSG00000165702.80.4213015.96620-5.244104.085003.45060HepG2NELFE
GFI1BENSG00000165702.816.100400.590304.769503.734702.80590HepG2RPS3A
GFI1BENSG00000165702.812.761500.851703.905102.557501.87680HepG2SF3B1
GFI1BENSG00000165702.80.0000012.68200-99999.999993.908403.27560HepG2SRSF9
GFI1BENSG00000165702.81.3736014.00540-3.350002.634302.08600HepG2TAF15
GFI1BENSG00000165702.811.585600.842003.782302.355101.67920HepG2TARDBP
GFI1BENSG00000165702.819.133804.293702.155702.131501.57270HepG2U2AF1
GFI1BENSG00000165702.8909.95610668.096900.445603.728702.33740K562AARS
GFI1BENSG00000165702.81891.178101330.878900.506805.245503.54930K562ABCF1
GFI1BENSG00000165702.81418.18230687.865801.043705.691403.27510K562ADAR
GFI1BENSG00000165702.8909.478201563.49580-0.7817018.7092017.35640K562AGGF1
GFI1BENSG00000165702.81883.925001336.313200.495403.352502.71900K562AQR
GFI1BENSG00000165702.81006.87180806.531300.320002.819401.49090K562BCCIP
GFI1BENSG00000165702.81155.82400779.395900.568409.047007.28550K562BCLAF1
GFI1BENSG00000165702.81003.51050673.562300.575105.477403.87380K562CCAR1
GFI1BENSG00000165702.82657.436101868.552800.508007.561705.60620K562CCDC124
GFI1BENSG00000165702.8830.36580549.646000.595104.032702.47180K562CIRBP
GFI1BENSG00000165702.82235.119901335.869800.742503.533701.87290K562CKAP4
GFI1BENSG00000165702.81516.10320781.123400.956607.446505.65400K562CNOT7
GFI1BENSG00000165702.81672.215101150.063700.539902.801601.69030K562CPEB4
GFI1BENSG00000165702.81166.41350674.980000.7891011.9662010.32410K562CPSF6
GFI1BENSG00000165702.81034.55040591.287900.807007.908605.99090K562CSTF2
GFI1BENSG00000165702.83251.283401891.091300.781707.935006.31670K562CELF1
GFI1BENSG00000165702.82203.356901216.308100.8571023.3655020.13650K562DDX21
GFI1BENSG00000165702.82241.202601190.291300.9129029.5225027.61400K562DDX47
GFI1BENSG00000165702.81195.338501750.79140-0.550607.033305.52890K562DKC1
GFI1BENSG00000165702.81773.10590700.857701.3390013.7036011.13520K562EEF2
GFI1BENSG00000165702.81096.59460676.971600.695803.637102.57860K562EFTUD2
GFI1BENSG00000165702.8862.42700674.066800.355403.388402.03560K562EIF2S1
GFI1BENSG00000165702.8987.94960685.135200.527902.478001.52970K562EIF3A
GFI1BENSG00000165702.81089.46010724.503200.588403.421902.26160K562EIF3D
GFI1BENSG00000165702.8695.29860444.781600.644406.502105.29760K562EIF3G
GFI1BENSG00000165702.81521.15800577.388601.3975045.1651041.28200K562EIF4B
GFI1BENSG00000165702.81835.650601538.061600.255102.824901.87730K562EIF4G2
GFI1BENSG00000165702.8829.70040559.663700.567906.086104.02060K562EWSR1
GFI1BENSG00000165702.81642.20560956.642000.7795011.560709.70130K562FIP1L1
GFI1BENSG00000165702.81139.68900666.788600.7732013.9453012.69000K562FXR1
GFI1BENSG00000165702.889.65770206.72570-1.205203.396902.59880K562G3BP2
GFI1BENSG00000165702.81543.957101056.791800.546808.503106.59970K562GLRX3
GFI1BENSG00000165702.8910.68120644.404400.498904.392503.39770K562GPKOW
GFI1BENSG00000165702.81408.288901026.822300.455704.016202.72180K562HNRNPA1
GFI1BENSG00000165702.81214.65840730.666100.7332010.033908.95440K562HNRNPC
GFI1BENSG00000165702.8839.42450652.647000.363002.613601.50620K562HNRNPF
GFI1BENSG00000165702.81411.001101075.629300.391403.748302.49260K562HNRNPL
GFI1BENSG00000165702.81453.408801137.233900.353803.413602.42350K562HNRNPU
GFI1BENSG00000165702.8854.466101297.03350-0.602106.663405.43980K562HSPD1
GFI1BENSG00000165702.8858.64410513.329100.742104.276402.88190K562IGF2BP2
GFI1BENSG00000165702.8730.62750538.992900.438802.541701.73530K562MAGOH
GFI1BENSG00000165702.8874.00360537.824000.700404.602203.38380K562MATR3
GFI1BENSG00000165702.81454.129601934.21730-0.411604.791903.53260K562MBNL1
GFI1BENSG00000165702.8854.33540629.025600.441603.709802.68610K562METAP2
GFI1BENSG00000165702.81225.76400667.840700.876008.213605.79190K562NONO
GFI1BENSG00000165702.81914.124301234.565100.6326010.496609.17120K562NSUN2
GFI1BENSG00000165702.81113.16740750.433700.568803.248501.89550K562PABPC1
GFI1BENSG00000165702.82684.493301664.351200.689603.128102.24310K562PCBP3
GFI1BENSG00000165702.81902.013901276.572600.575208.503007.12690K562POLR2G
GFI1BENSG00000165702.81626.08970854.421700.928303.060001.50410K562PPP1R8
GFI1BENSG00000165702.8808.87070523.702400.627103.547402.80670K562PTBP1
GFI1BENSG00000165702.8627.597001613.59660-1.3624027.8687026.12950K562PUS1
GFI1BENSG00000165702.81908.238901503.347200.344003.218001.47980K562RBM17
GFI1BENSG00000165702.8951.83380501.897200.9232011.091709.23810K562RBM22
GFI1BENSG00000165702.8819.73060489.461300.743905.191103.09910K562RBM34
GFI1BENSG00000165702.8996.46240597.968000.736607.193005.58680K562RCC2
GFI1BENSG00000165702.8855.52880528.229900.695606.027504.32750K562NELFE
GFI1BENSG00000165702.8345.40910209.497900.721304.709102.39120K562RECQL
GFI1BENSG00000165702.81137.60330670.803000.761905.059303.95130K562RPS19
GFI1BENSG00000165702.8897.87600539.359400.735203.612502.45060K562RPS3
GFI1BENSG00000165702.81414.59230673.315901.070903.095601.68750K562RRP9
GFI1BENSG00000165702.81807.193001137.587400.6677010.041808.04960K562SAFB
GFI1BENSG00000165702.81400.96120711.570600.977208.126605.43990K562SBDS
GFI1BENSG00000165702.81682.974801176.075300.516905.432003.39110K562SDAD1
GFI1BENSG00000165702.8427.91140214.659200.995209.358207.73910K562SF3B4
GFI1BENSG00000165702.81224.84500731.142500.744305.212902.77880K562SMN1
GFI1BENSG00000165702.81033.79720658.151000.651404.333802.23870K562SRP68
GFI1BENSG00000165702.82024.325201247.955400.6978020.2895018.12090K562SRPK2
GFI1BENSG00000165702.81314.31900513.458601.3559017.6102015.84660K562SRSF1
GFI1BENSG00000165702.8927.59160520.512200.833504.225102.88110K562SRSF4
GFI1BENSG00000165702.8721.00090485.060700.571704.142802.81610K562SRSF5
GFI1BENSG00000165702.81952.323401085.440800.8468022.3176019.16990K562SRSF7
GFI1BENSG00000165702.8300.08710458.77720-0.612403.112601.73740K562SSB
GFI1BENSG00000165702.81122.43430637.415300.816206.589604.97160K562SUPV3L1
GFI1BENSG00000165702.81520.39330519.533701.5491010.447208.92960K562TARDBP
GFI1BENSG00000165702.81034.33460581.303500.831207.718405.10130K562TFIP11
GFI1BENSG00000165702.81104.46040501.180401.1398022.6310020.14090K562TIA1
GFI1BENSG00000165702.81057.99820630.131600.747507.747006.11070K562TIAL1
GFI1BENSG00000165702.81027.71860492.090901.0623016.9900013.70100K562TRA2A
GFI1BENSG00000165702.81823.912001210.015800.591905.902703.30620K562TRNAU1AP
GFI1BENSG00000165702.82199.837301853.296800.247203.220501.84500K562TROVE2
GFI1BENSG00000165702.81041.722001309.02990-0.329503.302602.52140K562UPF1
GFI1BENSG00000165702.81564.708501164.716000.425807.290405.97860K562WDR43
GFI1BENSG00000165702.81249.48420687.510500.861807.911505.56250K562XRN2
GFI1BENSG00000165702.82201.150101505.625100.547805.328804.06600K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GFI1B is not available on ENCORE database.





3 RBPs can affect the splicing of GFI1B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGFI1BENSG00000165702.8chr9+1358644471358645851358635831358638551358651281358652940.081000.000280.06361includedK562METAP2
SEGFI1BENSG00000165702.8chr9+1358644471358645851358635831358638551358651281358652940.060000.008880.07384includedK562AQR
SEGFI1BENSG00000165702.8chr9+1358644471358645851358635831358638551358651281358652940.091000.000020.00912includedK562GPKOW

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GFI1B is not avaliable on ENCORE database.