GABARAP

General Information

Gene Name       : GABARAP
Gene ID             : ENSG00000170296.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GABARAP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GABARAPENSG00000170296.9466.78417.05441.91ENCSR000AEF
HepG2GABARAPENSG00000170296.9157.86192.29175.07ENCSR985KAT
K562GABARAPENSG00000170296.9223.42250.68237.05ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GABARAP is not avaliable on ENCORE database.



Proteins bound to RNA
  • GABARAP RNA is bound by 16 proteins.  







eCLIP assay for GABARAP is not avaliable on ENCORE database.





16 proteins are bound to GABARAP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1771438437143874-3'-UTR,intron-Distal,intron-Proximal4.711539.71324K562IGF2BP2
chr1771438707143924-3'-UTR,intron-Distal,intron-Proximal4.7634671.89299K562PABPC4
chr1771439507143996-3'-UTR,intron-Distal5.1126724.49379HepG2PCBP2
chr1771441287144184-3'-UTR,CDS,intron-Distal,intron-Proximal3.569214.61266K562IGF2BP1
chr1771446637144712-3'-UTR,5'-UTR,CDS,intron-Distal4.030254.88658HepG2SUB1
chr1771441137144141-3'-UTR,intron-Distal,intron-Proximal3.155835.16077K562IGF2BP2
chr1771446597144683-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.284073.63170K562IGF2BP1
chr1771439107144004-3'-UTR,intron-Distal,intron-Proximal3.4856520.43665HepG2LARP4
chr1771441417144200-3'-UTR,CDS,intron-Distal,intron-Proximal4.399577.66689K562IGF2BP2
chr1771438217143843-3'-UTR,intron-Distal,intron-Proximal3.289335.28732K562IGF2BP2
chr1771440757144120-3'-UTR,intron-Distal,intron-Proximal4.927136.96706HepG2LARP4
chr1771438937143950-3'-UTR,intron-Distal,intron-Proximal4.5392123.90316HepG2PCBP2
chr1771446607144776-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.170633.50786HepG2G3BP1
chr1771438587143928-3'-UTR,intron-Distal,intron-Proximal5.5796735.53537HepG2SUB1
chr1771438917143916-3'-UTR,intron-Distal,intron-Proximal3.207174.84889K562IGF2BP1
chr1771446837144711-3'-UTR,5'-UTR,CDS,intron-Distal3.186933.63170K562IGF2BP1
chr1771440117144045-3'-UTR,intron-Distal3.408018.12438K562PABPC4
chr1771438877143993-3'-UTR,intron-Distal,intron-Proximal4.3773430.27639K562PCBP1
chr1771439057143967-3'-UTR,intron-Distal,intron-Proximal3.2062511.08983K562TIA1
chr1771439247143978-3'-UTR,intron-Distal,intron-Proximal4.3207367.64227K562PABPC4
chr1771446607144718-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.325098.80587HepG2GRWD1
chr1771447187144753-3'-UTR,5'-UTR,CDS,intron-Distal3.273047.98960K562YBX3
chr1771456367145746-5'-UTR,CDS,intron-Distal,intron-Proximal3.412896.42293K562PUM1
chr1771455567145715-5'-UTR,CDS,intron-Distal,intron-Proximal3.3158617.67708HepG2GRWD1
chr1771455667145636-5'-UTR,CDS,intron-Distal,intron-Proximal3.981345.84717K562PUM1
chr1771455857145681-5'-UTR,CDS,intron-Distal,intron-Proximal3.7581225.32427K562PUM2
chr1771455267145645-5'-UTR,CDS,intron-Distal,intron-Proximal3.408274.80460HepG2AQR
chr1771455767145746-5'-UTR,CDS,intron-Distal,intron-Proximal3.6479712.61515K562DDX3X
chr1771448427144937-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.031286.01989HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GABARAP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GABARAP is not available on ENCORE database.

  • 96 RBPs can affect the levels of GABARAP.  








The Knockdown/knockout RNA-Seq assay for GABARAP is not available on ENCORE database.





96 RBPs can affect the gene expression of GABARAP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GABARAPENSG00000170296.53690.301702723.952600.437903.541802.48130HepG2ABCF1
GABARAPENSG00000170296.52282.874601743.048000.389103.426602.32660HepG2ADAR
GABARAPENSG00000170296.52502.521401662.637100.5898014.3111012.75220HepG2AKAP8L
GABARAPENSG00000170296.53605.887002812.698500.358302.926002.11940HepG2ASCC1
GABARAPENSG00000170296.53079.392402433.700700.339404.061703.15120HepG2CALR
GABARAPENSG00000170296.53277.779902380.388100.461403.311502.23690HepG2CCAR1
GABARAPENSG00000170296.53611.839102672.264300.434604.259403.31410HepG2CIRBP
GABARAPENSG00000170296.53154.824202733.419700.206803.340902.53930HepG2DAZAP1
GABARAPENSG00000170296.51860.436001530.564100.281504.123903.12850HepG2DDX19B
GABARAPENSG00000170296.52144.865701789.941800.260902.820101.64990HepG2DDX1
GABARAPENSG00000170296.52150.054901583.348200.441304.116103.32210HepG2DKC1
GABARAPENSG00000170296.52253.170901755.116500.360304.071903.23200HepG2DNAJC21
GABARAPENSG00000170296.52135.607401698.306200.330402.398901.53730HepG2EEF2
GABARAPENSG00000170296.51722.800701378.546300.321502.272601.44630HepG2EIF3D
GABARAPENSG00000170296.52214.845001617.082200.453705.549304.36390HepG2EWSR1
GABARAPENSG00000170296.53338.924602434.261800.455803.274902.58370HepG2GPKOW
GABARAPENSG00000170296.52115.431601771.932200.255501.868101.32540HepG2HNRNPA1
GABARAPENSG00000170296.53361.601102323.038400.533004.692403.89400HepG2HNRNPLL
GABARAPENSG00000170296.52905.809001999.974900.5389017.9709016.28790HepG2ILF2
GABARAPENSG00000170296.51829.903101512.775100.274504.078502.84870HepG2KIF1C
GABARAPENSG00000170296.53698.705102515.079400.556304.718403.62650HepG2LARP4
GABARAPENSG00000170296.52431.666102999.50300-0.302802.090301.51720HepG2MAGOH
GABARAPENSG00000170296.52136.696802808.88220-0.394607.477206.55780HepG2PCBP1
GABARAPENSG00000170296.51425.193301140.041600.322003.005001.72090HepG2PKM
GABARAPENSG00000170296.51577.790101264.602700.319101.993401.30340HepG2PRPF8
GABARAPENSG00000170296.52406.254302858.17160-0.248303.300502.71330HepG2PTBP1
GABARAPENSG00000170296.52061.792002744.64610-0.412704.834303.96080HepG2PUM2
GABARAPENSG00000170296.51705.419103095.40870-0.8600023.7385022.16470HepG2QKI
GABARAPENSG00000170296.55055.332402611.925700.9526020.3936019.25290HepG2RBM22
GABARAPENSG00000170296.52816.931503180.84650-0.175301.909801.44150HepG2NELFE
GABARAPENSG00000170296.52400.019602962.56990-0.303804.782504.00170HepG2RECQL
GABARAPENSG00000170296.51749.613901341.489100.383103.761903.05560HepG2RPS19
GABARAPENSG00000170296.52013.492201346.230600.580706.481305.05970HepG2SERBP1
GABARAPENSG00000170296.53264.853402166.499000.591602.744202.07280HepG2SF3A3
GABARAPENSG00000170296.52424.668502975.67360-0.295404.460103.73670HepG2SF3B4
GABARAPENSG00000170296.54104.158502950.046200.4762013.6669012.77900HepG2SRFBP1
GABARAPENSG00000170296.52761.349003105.98020-0.169701.960601.54350HepG2SRSF1
GABARAPENSG00000170296.54505.184302473.853800.864703.189002.10490HepG2SRSF3
GABARAPENSG00000170296.52146.573102554.72200-0.251103.207202.54150HepG2SRSF5
GABARAPENSG00000170296.53599.651302561.290100.4909011.3087010.40760HepG2SSB
GABARAPENSG00000170296.52526.852202905.38730-0.201402.695402.07950HepG2SUCLG1
GABARAPENSG00000170296.52282.566801856.437600.298002.330701.46240HepG2SUPT6H
GABARAPENSG00000170296.52808.822301632.079400.783209.557408.42800HepG2SUPV3L1
GABARAPENSG00000170296.52035.518002527.83670-0.312503.044602.12370HepG2TUFM
GABARAPENSG00000170296.51397.280801923.42410-0.461102.885401.59760HepG2XRCC5
GABARAPENSG00000170296.51476.153802150.90100-0.543103.718302.48740HepG2XRCC6
GABARAPENSG00000170296.54433.491002444.486900.8588045.8077043.75850HepG2ZC3H8
GABARAPENSG00000170296.52700.255902113.119400.353608.008207.20320HepG2ZNF622
GABARAPENSG00000170296.51450.007701954.20210-0.430502.668401.39920HepG2ZRANB2
GABARAPENSG00000170296.5865.278401178.73880-0.446004.080002.61310K562AARS
GABARAPENSG00000170296.53185.244002255.051400.4981011.8081010.72820K562AGGF1
GABARAPENSG00000170296.53791.763902477.889100.613709.477007.36890K562AKAP8
GABARAPENSG00000170296.54457.154902346.465600.9255010.137508.78350K562AKAP8L
GABARAPENSG00000170296.53080.595501945.542100.6629010.075909.06270K562AQR
GABARAPENSG00000170296.53006.133202461.974000.288003.460402.42870K562ATP5C1
GABARAPENSG00000170296.52630.483701927.760300.448303.897802.86250K562BOP1
GABARAPENSG00000170296.51455.332901072.535500.440203.634902.39030K562CCAR1
GABARAPENSG00000170296.53231.965102694.967300.262002.567601.44280K562CCDC124
GABARAPENSG00000170296.52525.605602049.808600.301002.947902.13840K562CPSF6
GABARAPENSG00000170296.51726.422302010.32310-0.219602.223601.62920K562DDX47
GABARAPENSG00000170296.53032.196402525.075400.263903.229402.27380K562DKC1
GABARAPENSG00000170296.5795.598001016.02260-0.352803.152502.30510K562EIF3G
GABARAPENSG00000170296.52814.178401720.117800.7101011.155909.33070K562FIP1L1
GABARAPENSG00000170296.52866.250302085.541900.458604.337603.26640K562FMR1
GABARAPENSG00000170296.52190.556901767.646000.309402.119501.32460K562FTO
GABARAPENSG00000170296.51122.40880898.257500.321302.736801.40710K562FUS
GABARAPENSG00000170296.5842.811401373.16110-0.7042013.1749011.95410K562FXR1
GABARAPENSG00000170296.52443.043101737.879100.491303.196902.38660K562GRSF1
GABARAPENSG00000170296.53143.931701779.778100.820804.434602.78130K562HNRNPA2B1
GABARAPENSG00000170296.51806.394501414.753800.352502.349901.49560K562HNRNPM
GABARAPENSG00000170296.53512.453502332.209500.590707.916306.58660K562HSPD1
GABARAPENSG00000170296.53626.629902490.248100.542208.562206.90150K562KIF1C
GABARAPENSG00000170296.51677.184301249.017600.425104.248802.47560K562LARP7
GABARAPENSG00000170296.51190.244801656.86210-0.477205.585604.37960K562MAGOH
GABARAPENSG00000170296.53745.270102383.730200.651704.399102.95190K562MAK16
GABARAPENSG00000170296.53245.081602374.951900.450304.803303.31330K562MSI2
GABARAPENSG00000170296.51757.224601501.461400.226802.390501.63820K562MTPAP
GABARAPENSG00000170296.53258.523901955.371000.736707.469605.74770K562NAA15
GABARAPENSG00000170296.52205.064801668.277800.402409.543108.26830K562NSUN2
GABARAPENSG00000170296.53211.233901556.598901.044606.917005.13030K562PABPN1
GABARAPENSG00000170296.51902.773701259.158700.595507.898605.44880K562PHF6
GABARAPENSG00000170296.52829.044101952.576300.534806.346105.01710K562PPIG
GABARAPENSG00000170296.52972.186501850.423400.683602.841401.37300K562PPP1R8
GABARAPENSG00000170296.51740.034001156.342300.589407.271605.68040K562PSIP1
GABARAPENSG00000170296.51279.152601609.78250-0.331703.170502.46460K562PTBP1
GABARAPENSG00000170296.55726.196502327.176001.2989011.033309.99840K562PUS1
GABARAPENSG00000170296.54333.757002267.378000.9345031.3359029.26400K562RBM15
GABARAPENSG00000170296.51470.918001055.071900.479305.761704.32280K562RCC2
GABARAPENSG00000170296.51847.504602413.38890-0.385503.210502.12280K562RPS3
GABARAPENSG00000170296.52275.142401423.432400.676502.576601.43160K562SF1
GABARAPENSG00000170296.52133.603101646.135600.374105.187004.09610K562SF3A3
GABARAPENSG00000170296.53099.923301634.907000.922904.973703.17190K562SNRNP200
GABARAPENSG00000170296.51513.628101000.173800.597707.237105.34930K562SRFBP1
GABARAPENSG00000170296.51466.917701686.49890-0.201202.246101.39350K562SRPK2
GABARAPENSG00000170296.53099.958701955.479100.664602.795301.36250K562SUPT6H
GABARAPENSG00000170296.51712.951401112.200700.623006.671405.16250K562TIAL1
GABARAPENSG00000170296.51902.433201181.635700.687009.070107.13900K562TRIM56
GABARAPENSG00000170296.52395.696702039.386700.232202.743901.48130K562TROVE2
GABARAPENSG00000170296.51702.783501326.357900.360302.363901.36440K562U2AF1
GABARAPENSG00000170296.53611.713502741.223100.397804.539702.75000K562UBE2L3
GABARAPENSG00000170296.51395.016501030.759400.436503.595202.42060K562UCHL5
GABARAPENSG00000170296.52375.210901768.908800.425108.214207.05720K562UPF1
GABARAPENSG00000170296.53905.570502359.386500.727004.064002.39460K562UTP18
GABARAPENSG00000170296.51937.132101513.601900.355803.577402.58410K562WDR3
GABARAPENSG00000170296.51360.459101573.95310-0.210302.304801.52640K562WDR43
GABARAPENSG00000170296.52787.454702191.494200.346903.426502.44980K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GABARAP is not available on ENCORE database.





2 RBPs can affect the splicing of GABARAP :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGABARAPENSG00000170296.5chr17-714491971449917144660714477971455597145766-0.056000.000000.00000excludedHepG2U2AF1
SEGABARAPENSG00000170296.5chr17-714491971449917144589714477971455597146089-0.069000.000010.00296excludedHepG2SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GABARAP is not avaliable on ENCORE database.