COX5A

General Information

Gene Name       : COX5A
Gene ID             : ENSG00000178741.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: COX5A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878COX5AENSG00000178741.11231.68312.69272.19ENCSR000AEF
HepG2COX5AENSG00000178741.11195.24251.83223.54ENCSR985KAT
K562COX5AENSG00000178741.11411.08372.26391.67ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for COX5A is not avaliable on ENCORE database.



Proteins bound to RNA
  • COX5A RNA is bound by 15 proteins.  







eCLIP assay for COX5A is not avaliable on ENCORE database.





15 proteins are bound to COX5A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr157521914075219213-3'-UTR,CDS,intron-Distal3.8271812.90571K562LIN28B
chr157521264775212675-3'-UTR,CDS,intron-Distal,intron-Proximal5.428906.79809K562PABPC4
chr157521270475212755-3'-UTR,CDS,intron-Distal4.2619226.60683K562PABPC4
chr157521270175212759-3'-UTR,CDS,intron-Distal5.425958.03171K562ZC3H11A
chr157521919575219229-3'-UTR,CDS,intron-Distal,intron-Proximal4.209953.11282HepG2G3BP1
chr157521277175212782-3'-UTR,CDS,intron-Distal3.449869.62690K562YBX3
chr157521599075216039-3'-UTR,CDS,intron-Distal3.215028.91984HepG2LARP4
chr157521593975215990-3'-UTR,intron-Distal,intron-Proximal3.699635.70278K562AQR
chr157521916075219219-3'-UTR,CDS,intron-Distal4.5099310.12546HepG2SUB1
chr157521918075219230-3'-UTR,CDS,intron-Distal,intron-Proximal3.992927.02300K562RPS3
chr157521276775212783-3'-UTR,CDS,intron-Distal3.062224.89167HepG2LARP4
chr157521914775219228-3'-UTR,CDS,intron-Distal4.354387.21729HepG2RPS3
chr157521598975215991-3'-UTR,intron-Distal3.4834210.17500K562YBX3
chr157521271275212780-3'-UTR,CDS,intron-Distal7.7001735.68046HepG2SUB1
chr157521599175216004-3'-UTR,CDS,intron-Distal3.418379.81338K562YBX3
chr157521270775212767-3'-UTR,CDS,intron-Distal4.8330028.13758HepG2LARP4
chr157521910575219224-3'-UTR,CDS,intron-Distal,intron-Proximal3.628653.54620HepG2LIN28B
chr157523027675230386-5'-UTR,CDS,intron-Distal6.2217528.06425K562SERBP1
chr157522141175221478-5'-UTR,CDS,intron-Distal,intron-Proximal4.318085.93840HepG2PRPF8
chr157523028275230362-5'-UTR,CDS,intron-Distal3.8930233.63216K562DDX3X
chr157523025675230387-5'-UTR,CDS,intron-Distal3.1141317.58413K562GEMIN5
chr157523034275230357-5'-UTR,CDS,intron-Distal4.0690642.36854K562YBX3
chr157523036275230407-5'-UTR,intron-Distal3.547065.22097K562DDX3X
chr157523029575230382-5'-UTR,CDS,intron-Distal3.3488413.92387HepG2DDX3X
chr157522145675221503-5'-UTR,CDS,intron-Distal,intron-Proximal3.321443.43531K562APOBEC3C
chr157521606375216070-CDS,intron-Distal4.1834545.99757K562YBX3
chr157521600475216033-CDS,intron-Distal3.1028426.49620K562YBX3
chr157521607075216074-CDS,intron-Distal4.0290143.39612K562YBX3
chr157523031575230331-CDS,intron-Distal3.9470054.83393K562YBX3
chr157521609475216110-CDS,intron-Distal4.245978.02139HepG2LARP4
chr157521605375216111-CDS,intron-Distal3.056413.38659K562LIN28B
chr157521605175216063-CDS,intron-Distal3.8361442.34145K562YBX3
chr157521604175216051-CDS,intron-Distal3.7106251.03402K562YBX3
chr157523029775230315-CDS,intron-Distal3.0220126.26570K562YBX3
chr157521910475219140-CDS,intron-Distal,intron-Proximal4.654855.00488K562LIN28B
chr157521607475216090-CDS,intron-Distal3.5386325.66607K562YBX3
chr157521910675219138-CDS,intron-Distal,intron-Proximal4.1673111.06468HepG2LARP4
chr157523033175230342-CDS,intron-Distal3.9625949.70224K562YBX3
chr157523025475230282-CDS,intron-Distal3.9543814.76558K562DDX3X
chr157521603975216094-CDS,intron-Distal4.3851614.62669HepG2LARP4
chr157522163675221730-intron-Distal,intron-Proximal3.323163.48890K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for COX5A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for COX5A is not available on ENCORE database.

  • 101 RBPs can affect the levels of COX5A.  








The Knockdown/knockout RNA-Seq assay for COX5A is not available on ENCORE database.





101 RBPs can affect the gene expression of COX5A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
COX5AENSG00000178741.71675.917501953.03210-0.220802.318301.68100HepG2AUH
COX5AENSG00000178741.7612.94060795.13280-0.375402.643901.44440HepG2BUD13
COX5AENSG00000178741.7630.02760873.99820-0.472204.031902.70630HepG2CPSF7
COX5AENSG00000178741.7445.919401868.70280-2.0672083.9841081.13170HepG2DAZAP1
COX5AENSG00000178741.71031.818001926.16120-0.9005012.5584011.31500HepG2DDX3X
COX5AENSG00000178741.7630.586701075.84610-0.770707.521306.31910HepG2DDX55
COX5AENSG00000178741.71142.784101590.62120-0.477003.970103.26840HepG2EIF2S1
COX5AENSG00000178741.71114.924801757.85810-0.656906.256005.30050HepG2EIF4A3
COX5AENSG00000178741.7798.910801711.45540-1.0991012.4898011.08340HepG2EIF4B
COX5AENSG00000178741.71224.013302242.32970-0.8734027.6537026.08540HepG2ETF1
COX5AENSG00000178741.7280.11120544.90240-0.960003.931102.71820HepG2FTO
COX5AENSG00000178741.7726.262301007.03970-0.471603.798102.88530HepG2FUBP3
COX5AENSG00000178741.71236.556101773.50030-0.520304.779003.88560HepG2FXR1
COX5AENSG00000178741.7821.405101645.23670-1.0021014.0125012.57590HepG2G3BP1
COX5AENSG00000178741.71290.675401746.55760-0.436403.653202.62290HepG2G3BP2
COX5AENSG00000178741.7376.78430616.57630-0.710505.347804.47660HepG2GPKOW
COX5AENSG00000178741.7732.93230907.06580-0.307501.924001.33390HepG2HNRNPC
COX5AENSG00000178741.7692.35920901.07140-0.380102.960502.33530HepG2HNRNPU
COX5AENSG00000178741.71056.634901672.36680-0.662407.343006.29770HepG2IGF2BP2
COX5AENSG00000178741.7750.195001069.55810-0.511702.928901.56030HepG2ILF3
COX5AENSG00000178741.71247.037101774.11900-0.508604.501803.66950HepG2MAGOH
COX5AENSG00000178741.7905.611701784.06560-0.9782012.9149011.62570HepG2MATR3
COX5AENSG00000178741.71221.801201826.10420-0.579805.511604.63260HepG2NCBP2
COX5AENSG00000178741.71321.622501853.01470-0.487605.866504.75890HepG2NOL12
COX5AENSG00000178741.7536.30900988.04630-0.881503.321802.11490HepG2NONO
COX5AENSG00000178741.7838.254601626.32850-0.9562013.4374011.87420HepG2PABPC4
COX5AENSG00000178741.71212.631601620.31290-0.418106.583905.70860HepG2PCBP1
COX5AENSG00000178741.7639.80170803.68970-0.329002.767602.03080HepG2PPIL4
COX5AENSG00000178741.7470.93710706.78340-0.585706.953905.79070HepG2PRPF4
COX5AENSG00000178741.71043.184501648.71340-0.6603014.0409012.99520HepG2PTBP1
COX5AENSG00000178741.71586.488901877.87650-0.243303.044702.42910HepG2PUM1
COX5AENSG00000178741.71232.623601876.45640-0.606309.485108.28130HepG2PUM2
COX5AENSG00000178741.7973.647501232.77300-0.340402.545201.94760HepG2PUS1
COX5AENSG00000178741.71073.734801785.63040-0.7338014.4982013.22550HepG2QKI
COX5AENSG00000178741.71204.68060879.953500.453101.995101.38670HepG2RAVER1
COX5AENSG00000178741.71058.299401297.13450-0.293602.638301.79880HepG2RBM15
COX5AENSG00000178741.71478.708101874.17530-0.341904.302703.69380HepG2RBM22
COX5AENSG00000178741.71127.051501620.56190-0.523906.586205.58600HepG2RBM25
COX5AENSG00000178741.71558.960901834.87260-0.235102.547502.02540HepG2NELFE
COX5AENSG00000178741.71200.249701708.91120-0.509709.305108.27460HepG2RECQL
COX5AENSG00000178741.7311.07370580.44830-0.899909.905908.83060HepG2RPS19
COX5AENSG00000178741.71262.954001716.55130-0.442707.314406.42650HepG2SF3B4
COX5AENSG00000178741.7760.84210935.84280-0.298703.069602.39670HepG2SMN1
COX5AENSG00000178741.71730.960502116.81660-0.290304.176403.59790HepG2SRFBP1
COX5AENSG00000178741.71255.097501746.65520-0.476808.010407.01690HepG2SRSF5
COX5AENSG00000178741.7883.550401457.63080-0.7222015.2006014.09220HepG2SRSF9
COX5AENSG00000178741.71511.698801986.34830-0.393906.890505.98630HepG2SUCLG1
COX5AENSG00000178741.7672.403601070.94540-0.671505.935405.00180HepG2SUPV3L1
COX5AENSG00000178741.71288.272201610.41530-0.322003.497202.88000HepG2TAF15
COX5AENSG00000178741.71186.665101479.78560-0.318502.891802.03900HepG2TIA1
COX5AENSG00000178741.7657.97950875.68780-0.412401.978201.54040HepG2TIAL1
COX5AENSG00000178741.7648.65200883.37780-0.445604.795304.09400HepG2TRIM56
COX5AENSG00000178741.71022.804001829.45990-0.838909.526207.92880HepG2UBE2L3
COX5AENSG00000178741.7808.80530963.58090-0.252602.249501.60910HepG2UPF1
COX5AENSG00000178741.72726.531503357.13870-0.300202.472401.32200K562ABCF1
COX5AENSG00000178741.75037.984403037.649500.7298028.6518026.91820K562AGGF1
COX5AENSG00000178741.74485.101003337.955400.426103.068702.02040K562AKAP8
COX5AENSG00000178741.75319.653503160.821300.7509014.7776013.06530K562AKAP8L
COX5AENSG00000178741.73406.513205054.56870-0.569308.331707.40170K562AQR
COX5AENSG00000178741.74406.929103316.480000.410007.340005.75100K562ATP5C1
COX5AENSG00000178741.72374.982102716.39080-0.193802.410101.51620K562BCLAF1
COX5AENSG00000178741.71054.783301335.30400-0.340202.208401.43520K562BOP1
COX5AENSG00000178741.71156.162101419.77470-0.296302.429301.69030K562CPSF6
COX5AENSG00000178741.74512.882603401.211800.407904.966803.74040K562DKC1
COX5AENSG00000178741.7948.687801231.09080-0.375902.894701.51670K562DNAJC21
COX5AENSG00000178741.71768.989602263.26500-0.355502.878801.94760K562EFTUD2
COX5AENSG00000178741.72873.129303372.08570-0.231002.636101.93070K562EIF2S2
COX5AENSG00000178741.7619.336401164.50070-0.910906.855205.21960K562EIF3A
COX5AENSG00000178741.71847.527902827.02300-0.613708.934107.45730K562EIF4A3
COX5AENSG00000178741.72102.255702545.89680-0.276203.011201.79120K562EIF4B
COX5AENSG00000178741.74368.955905418.80690-0.310705.400604.10800K562EIF4G2
COX5AENSG00000178741.73160.019002413.357800.388803.988602.95810K562FIP1L1
COX5AENSG00000178741.71055.396801444.65790-0.452902.095301.34570K562FMR1
COX5AENSG00000178741.7803.514701224.50860-0.607805.753104.38170K562FTO
COX5AENSG00000178741.71657.908702269.09020-0.452704.064102.30590K562GEMIN5
COX5AENSG00000178741.72242.118502849.50870-0.345903.567502.27570K562GLRX3
COX5AENSG00000178741.7974.645501355.50620-0.475904.745603.71020K562GPKOW
COX5AENSG00000178741.72984.605903574.42610-0.260202.469401.45550K562HNRNPA1
COX5AENSG00000178741.7730.918902284.69420-1.6442012.5924011.39370K562HNRNPC
COX5AENSG00000178741.71400.242102041.08280-0.543702.712101.58310K562HNRNPF
COX5AENSG00000178741.72751.691101985.092900.471003.876702.76250K562HNRNPM
COX5AENSG00000178741.73096.495903958.40580-0.354305.170403.93580K562HNRNPU
COX5AENSG00000178741.7758.843001155.90960-0.607205.914203.74500K562KHDRBS1
COX5AENSG00000178741.74133.326903354.388800.301202.980202.12240K562KIF1C
COX5AENSG00000178741.72743.053603292.26530-0.263302.192701.43940K562MAGOH
COX5AENSG00000178741.74196.624303211.001900.386104.614603.11950K562MAK16
COX5AENSG00000178741.71988.713603285.55720-0.7243014.3991012.19390K562MATR3
COX5AENSG00000178741.74746.894803757.767300.337004.192303.03600K562MBNL1
COX5AENSG00000178741.72317.523602995.89190-0.370407.364206.10010K562MTPAP
COX5AENSG00000178741.73406.442702633.925600.371002.391401.58430K562NAA15
COX5AENSG00000178741.72587.937503328.67640-0.3631010.324409.00730K562NSUN2
COX5AENSG00000178741.72810.598201476.519600.928604.672203.29240K562PABPN1
COX5AENSG00000178741.71481.097401931.69750-0.383202.802901.96580K562PCBP3
COX5AENSG00000178741.73641.309902739.741900.410304.242203.19650K562PPIG
COX5AENSG00000178741.71474.441402048.70360-0.474502.122001.34040K562PSIP1
COX5AENSG00000178741.74465.182505912.22510-0.405003.853602.89600K562PUF60
COX5AENSG00000178741.74733.075806161.53270-0.380507.721506.09160K562PUM2
COX5AENSG00000178741.75330.626703134.601200.7659013.2025012.06240K562PUS1
COX5AENSG00000178741.74599.318403054.251500.5905013.9488012.61110K562RBM15
COX5AENSG00000178741.72313.912303067.02490-0.406504.275903.20350K562RBM22
COX5AENSG00000178741.72317.363902989.84410-0.367603.105001.60420K562RBM34
COX5AENSG00000178741.71714.282902243.30450-0.388002.844102.01600K562RPS19
COX5AENSG00000178741.72368.575801349.876600.811102.545401.41080K562SF1
COX5AENSG00000178741.72100.401303284.59660-0.6451013.3401011.66070K562SF3A3
COX5AENSG00000178741.7938.218601289.24110-0.458503.265102.20630K562SF3B1
COX5AENSG00000178741.72090.192002602.60600-0.316303.636502.65210K562SF3B4
COX5AENSG00000178741.71528.832802199.41310-0.524705.995503.46900K562SRP68
COX5AENSG00000178741.72662.266703365.14400-0.338007.353505.90380K562SRPK2
COX5AENSG00000178741.72494.486503166.37270-0.344103.054801.61730K562SSRP1
COX5AENSG00000178741.72293.530502895.98960-0.336502.487301.30350K562STAU1
COX5AENSG00000178741.71402.979902132.22420-0.603906.208804.64340K562SUPV3L1
COX5AENSG00000178741.71282.010301970.37240-0.620102.910101.94880K562TIAL1
COX5AENSG00000178741.71126.544902094.53420-0.894705.110203.72890K562TRIM56
COX5AENSG00000178741.71677.823802256.79460-0.427703.967502.72510K562UCHL5
COX5AENSG00000178741.72053.752203529.46840-0.7812029.9987027.93540K562UPF1
COX5AENSG00000178741.72358.048303020.05100-0.357004.069003.00140K562WDR3
COX5AENSG00000178741.72349.617703140.52790-0.418607.334406.01900K562WDR43
COX5AENSG00000178741.71665.989302298.20220-0.464104.520302.83620K562XRN2
COX5AENSG00000178741.74820.130805694.47680-0.240502.075801.33960K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for COX5A is not available on ENCORE database.





2 RBPs can affect the splicing of COX5A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECOX5AENSG00000178741.7chr15-7521600175216158752126207521278375219106752192280.262000.000080.00145includedK562AQR
SECOX5AENSG00000178741.7chr15-752214567522157375219106752192287523025575230424-0.053000.000000.00000excludedK562AQR
SECOX5AENSG00000178741.7chr15-752214567522157375219106752192287523025575230411-0.066000.000000.00000excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for COX5A is not avaliable on ENCORE database.