COL9A3

General Information

Gene Name       : COL9A3
Gene ID             : ENSG00000092758.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: COL9A3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878COL9A3ENSG00000092758.170.080.140.11ENCSR000AEF
HepG2COL9A3ENSG00000092758.17111.3124.3967.85ENCSR985KAT
K562COL9A3ENSG00000092758.170.550.320.44ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for COL9A3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • COL9A3 RNA is bound by 41 proteins.  







eCLIP assay for COL9A3 is not avaliable on ENCORE database.





41 proteins are bound to COL9A3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr206147212761472186+3'-UTR3.1008917.04948HepG2LSM11
chr206147218561472246+3'-UTR3.6613120.63616HepG2PABPN1
chr206147221661472238+3'-UTR5.3082822.08281HepG2LSM11
chr206147209561472280+3'-UTR3.151308.94477HepG2UPF1
chr206147216561472229+3'-UTR4.352774.40113HepG2AKAP1
chr206147233761472373+3'-UTR4.1222711.80857HepG2LSM11
chr206147218661472216+3'-UTR3.6655717.15893HepG2LSM11
chr206147223861472292+3'-UTR3.9835213.78497HepG2LSM11
chr206147212861472150+3'-UTR3.2908518.00348HepG2PABPN1
chr206147237261472470+3'-UTR4.1809023.68089HepG2ZC3H11A
chr206147208161472128+3'-UTR4.5636226.90323HepG2PABPN1
chr206147215061472180+3'-UTR3.4018118.67446HepG2PABPN1
chr206147227961472372+3'-UTR3.1977014.47108HepG2ZC3H11A
chr206144917561449214+5'-UTR,CDS,intron-Distal5.1078810.93557HepG2EFTUD2
chr206144841161448442+5'-UTR,CDS,intron-Distal3.6989411.31791HepG2PABPN1
chr206144841061448462+5'-UTR,CDS,intron-Distal3.6335617.72061HepG2DDX3X
chr206145757561457588+CDS4.5789351.86761HepG2PPIG
chr206146097961461017+CDS,intron-Proximal4.2405221.67969HepG2PABPN1
chr206146028761460303+CDS3.5800211.94161HepG2PABPN1
chr206145926661459331+CDS,intron-Proximal4.2989229.72596HepG2EFTUD2
chr206146856161468615+CDS3.3046619.72444HepG2PABPN1
chr206145253261452535+CDS,intron-Proximal3.4517111.54665HepG2SND1
chr206146012461460155+CDS3.4459011.36772HepG2SRSF1
chr206145859261458637+CDS,intron-Proximal3.069794.23022HepG2GRSF1
chr206145811961458170+CDS3.2365514.24601HepG2RPS3
chr206145756361457589+CDS3.2986115.31059HepG2SRSF1
chr206145926661459313+CDS,intron-Proximal3.191607.22233HepG2PRPF4
chr206146858661468616+CDS3.1628120.89970HepG2PPIG
chr206145758861457597+CDS4.6668652.45344HepG2PPIG
chr206145285861452881+CDS,intron-Proximal4.0380340.40192HepG2PPIG
chr206146350561463529+CDS,intron-Proximal3.086997.19902HepG2NOL12
chr206145755561457563+CDS,intron-Proximal4.8505014.67669HepG2PABPN1
chr206145755561457564+CDS,intron-Proximal3.222748.22546HepG2SND1
chr206145756161457566+CDS3.7125121.11531HepG2PPIG
chr206145253261452536+CDS,intron-Proximal3.7438147.54838HepG2PPIG
chr206146111761461170+CDS,intron-Proximal3.331055.53350HepG2FTO
chr206146100861461033+CDS3.2940610.70314HepG2SND1
chr206145860361458636+CDS3.759317.44323HepG2NOL12
chr206144987361449901+CDS3.193855.69504HepG2RPS3
chr206145128761451313+CDS4.69252400.00000HepG2PPIG
chr206146080661460812+CDS,intron-Proximal3.822926.28213HepG2SDAD1
chr206146098461461033+CDS4.30205400.00000HepG2PPIG
chr206145811861458162+CDS,intron-Proximal3.083908.57043HepG2SDAD1
chr206145719961457219+CDS3.5778111.39461HepG2PABPN1
chr206144846461448494+CDS,intron-Distal3.6507516.85285HepG2DDX3X
chr206146111961461171+CDS3.5612313.35975HepG2SDAD1
chr206146011561460118+CDS,intron-Proximal4.0559124.76213HepG2PPIG
chr206145716861457172+CDS,intron-Proximal3.2047123.13374HepG2PPIG
chr206145717161457220+CDS3.025055.19695HepG2GRWD1
chr206146785961467884+CDS,intron-Distal5.365139.84710HepG2GRSF1
chr206147005461470102+CDS3.7483516.48079HepG2SND1
chr206145634161456373+CDS3.0340327.82658HepG2PPIG
chr206145758961457607+CDS3.284863.14078HepG2GRSF1
chr206147197261472029+CDS3.2234615.29246HepG2LSM11
chr206145861461458637+CDS3.7758538.28694HepG2PPIG
chr206146192161461940+CDS3.114899.02677HepG2PABPN1
chr206145931961459327+CDS3.1815611.74326HepG2BUD13
chr206145929061459313+CDS3.1265610.24753HepG2SND1
chr206145581761455845+CDS3.6486641.72109HepG2PPIG
chr206145859561458643+CDS3.0756917.40795HepG2BUD13
chr206144987261449904+CDS3.297394.84872HepG2NOL12
chr206145717461457210+CDS3.8196747.31614HepG2PPIG
chr206147197861472011+CDS3.1142311.87102HepG2PABPN1
chr206146787461467883+CDS,intron-Distal3.7112931.09066HepG2PPIG
chr206145721061457219+CDS4.0023626.73570HepG2PPIG
chr206144892061448942+CDS3.5687711.97902HepG2PABPN1
chr206146112361461172+CDS,intron-Proximal3.9622615.43022HepG2EFTUD2
chr206145312061453161+CDS3.2319832.79223HepG2PPIG
chr206146028461460324+CDS3.185536.82655HepG2NOL12
chr206146116861461171+CDS3.8393240.94650HepG2PPIG
chr206145758861457606+CDS3.583906.17491HepG2SDAD1
chr206145927561459323+CDS4.520669.54667HepG2SDAD1
chr206146727261467296+CDS,intron-Proximal3.9115934.04318HepG2PPIG
chr206145927661459284+CDS3.726228.88028HepG2SND1
chr206145253261452536+CDS,intron-Proximal3.429264.82058HepG2SRSF9
chr206146171161461719+CDS,intron-Proximal3.9625013.60629HepG2PABPN1
chr206146766861467685+CDS4.0804215.83705HepG2PABPN1
chr206147195361472029+CDS4.4021026.10642HepG2RPS3
chr206144892061448971+CDS3.144129.45353HepG2RPS3
chr206146083861460852+CDS,intron-Proximal3.789354.44979HepG2GRSF1
chr206146782961467834+CDS,intron-Distal,intron-Proximal3.7404911.90605HepG2PABPN1
chr206145253161452569+CDS,intron-Proximal3.5586318.02642HepG2RPS3
chr206146113061461169+CDS3.6714818.63648HepG2BUD13
chr206145758961457609+CDS3.2536713.49857HepG2SRSF1
chr206146783361467874+CDS,intron-Distal3.9085320.60933HepG2LSM11
chr206146080661460809+CDS,intron-Proximal3.823954.62987HepG2NOL12
chr206146440461464416+CDS4.5762631.59349HepG2PPIG
chr206146171161461727+CDS,intron-Proximal4.0438245.27364HepG2PPIG
chr206145287161452881+CDS3.080496.68104HepG2SND1
chr206147189461471918+CDS4.2761616.03394HepG2PABPN1
chr206146760861467643+CDS3.4180510.26348HepG2EIF3H
chr206146350561463528+CDS,intron-Proximal3.2794713.99025HepG2SND1
chr206145721361457222+CDS3.029027.07113HepG2SRSF1
chr206145346761453516+CDS3.0142017.43723HepG2SND1
chr206146083361460850+CDS3.264026.09950HepG2BCLAF1
chr206146848961468493+CDS3.4335113.67375HepG2ZC3H11A
chr206147009361470113+CDS3.406648.97935HepG2PABPN1
chr206145253261452535+CDS,intron-Proximal3.8358714.55627HepG2SRSF1
chr206145128261451333+CDS3.5691723.00350HepG2PABPN1
chr206147004761470093+CDS3.2805021.82350HepG2PABPN1
chr206145927761459328+CDS4.46635400.00000HepG2PPIG
chr206145063561450645+CDS3.4109013.32548HepG2SND1
chr206146098361461032+CDS3.1384013.97765HepG2BCLAF1
chr206146171161461724+CDS,intron-Proximal3.240486.91872HepG2BCLAF1
chr206145129161451334+CDS3.3065821.10818HepG2SND1
chr206146082261460851+CDS3.7290055.34559HepG2PPIG
chr206147191861471951+CDS4.0884615.49800HepG2PABPN1
chr206145253561452568+CDS3.3749819.37275HepG2SRSF1
chr206145128061451287+CDS,intron-Proximal5.2241762.84200HepG2PPIG
chr206146111861461171+CDS3.7340727.58004HepG2PABPN1
chr206146174361461764+CDS4.6474615.89240HepG2PABPN1
chr206144986961449874+CDS,intron-Proximal3.4555712.27399HepG2BUD13
chr206145286061452867+CDS3.072067.14364HepG2PABPN1
chr206145812561458142+CDS3.9692922.34140HepG2SND1
chr206146097961460984+CDS,intron-Proximal4.0730251.68759HepG2PPIG
chr206146097961461008+CDS,intron-Proximal3.0502811.85592HepG2SND1
chr206146782961467859+CDS,intron-Distal,intron-Proximal3.214186.40706HepG2GRSF1
chr206146849361468562+CDS4.0989932.02323HepG2ZC3H11A
chr206145863761458645+CDS3.714977.52610HepG2SND1
chr206145716861457222+CDS,intron-Proximal3.4421825.69986HepG2SND1
chr206145284961452912+CDS,intron-Proximal4.4632924.42415HepG2EFTUD2
chr206146031961460328+CDS3.9200612.22222HepG2PABPN1
chr206145859261458637+CDS,intron-Proximal3.1570710.29518HepG2SRSF1
chr206146785261467866+CDS,intron-Distal3.5826836.14377HepG2PPIG
chr206145131361451331+CDS4.43322400.00000HepG2PPIG
chr206144989661449900+CDS3.9693410.31172HepG2PABPN1
chr206146031061460366+CDS,intron-Proximal3.1207528.04412HepG2PRPF8
chr206145253561452564+CDS4.0562627.16885HepG2SND1
chr206145812261458172+CDS3.9530975.80930HepG2PPIG
chr206147195261471959+CDS3.770504.21067HepG2NOL12
chr206145812461458159+CDS3.5502516.41913HepG2SRSF1
chr206145756461457609+CDS3.7148826.19294HepG2SND1
chr206146782861467855+CDS,intron-Distal,intron-Proximal3.7975410.10408HepG2ZC3H11A
chr206146187661461917+CDS3.4811914.89736HepG2SND1
chr206145864361458682+CDS,intron-Proximal3.1944420.41227HepG2PRPF8
chr206145061361450635+CDS3.2494213.98868HepG2SND1
chr206145811861458125+CDS,intron-Proximal3.473897.76716HepG2SND1
chr206144891861448971+CDS,intron-Proximal3.2554724.62008HepG2DDX3X
chr206146853861468589+CDS4.228647.53418HepG2ZNF800
chr206146188961461940+CDS3.9990660.77425HepG2PPIG
chr206145133161451334+CDS4.0544864.32017HepG2PPIG
chr206146015761460168+CDS3.299639.97658HepG2PABPN1
chr206146082661460847+CDS3.299366.84857HepG2SDAD1
chr206145863761458646+CDS3.8488327.07665HepG2PPIG
chr206146782961467833+CDS,intron-Distal,intron-Proximal4.3091619.58012HepG2LSM11
chr206145863761458645+CDS3.9319812.33069HepG2PABPN1
chr206145926561459326+CDS,intron-Proximal3.2500610.68882HepG2GRWD1
chr206147009061470112+CDS3.366487.10571HepG2LSM11
chr206145759761457609+CDS4.3951556.06183HepG2PPIG
chr206146760161467646+CDS4.5325722.65958HepG2PABPN1
chr206146027561460278+CDS3.4714418.26519HepG2PPIG
chr206145285861452870+CDS,intron-Proximal3.3539711.52759HepG2RPS3
chr206145288161452944+CDS,intron-Proximal3.303934.56680HepG2SUPV3L1
chr206146114461461171+CDS4.1131517.69278HepG2SND1
chr206146021461460293+CDS,intron-Proximal3.3734413.01265HepG2EFTUD2
chr206146080661460814+CDS,intron-Proximal3.523348.95206HepG2PABPN1
chr206146031561460328+CDS3.224017.17861HepG2SRSF1
chr206145811861458126+CDS,intron-Proximal4.2390017.07964HepG2PABPN1
chr206146097861461026+CDS,intron-Proximal4.1852116.56965HepG2SDAD1
chr206145394261453956+CDS,intron-Proximal3.545349.77407HepG2SND1
chr206145253661452564+CDS3.265954.99200HepG2SRSF9
chr206146011861460126+CDS3.7734325.26458HepG2PPIG
chr206147006061470090+CDS3.093506.42894HepG2LSM11
chr206145580061455817+CDS3.8132342.44198HepG2PPIG
chr206146111761461121+CDS,intron-Proximal4.0356243.06512HepG2PPIG
chr206144987661449905+CDS3.4790942.31013HepG2PPIG
chr206147190061471950+CDS3.6753814.87929HepG2SND1
chr206145926961459319+CDS,intron-Proximal3.6067533.50630HepG2BUD13
chr206147192161471972+CDS4.2970617.59799HepG2LSM11
chr206144987061449872+CDS3.1419721.62962HepG2PPIG
chr206145759661457609+CDS4.6584023.27540HepG2PABPN1
chr206146080761460811+CDS3.886807.64752HepG2SRSF1
chr206146112261461144+CDS3.3113610.72902HepG2SND1
chr206146014061460152+CDS4.6445911.71961HepG2PABPN1
chr206145128461451328+CDS3.5123638.06807HepG2SRSF1
chr206146171261461717+CDS4.7245512.44115HepG2BUD13
chr206145253361452565+CDS3.3330413.31997HepG2PABPN1
chr206146027561460287+CDS3.5588211.39461HepG2PABPN1
chr206146027861460328+CDS3.6885053.27480HepG2PPIG
chr206146727461467280+CDS3.469145.76104HepG2BCLAF1
chr206147189461471921+CDS3.245837.15802HepG2LSM11
chr206146015361460168+CDS3.3657721.15335HepG2PPIG
chr206146081461460838+CDS4.0061018.68948HepG2PABPN1
chr206145063961450669+CDS,intron-Proximal3.6134126.94589HepG2PRPF8
chr206146787461467883+CDS,intron-Distal3.020507.15802HepG2LSM11
chr206146101761461033+CDS4.7416815.89240HepG2PABPN1
chr206146755061467569+CDS3.067975.82570HepG2LSM11
chr206146857061468616+CDS3.867279.30898HepG2ZC3H11A
chr206147198361472030+CDS3.3798715.38733HepG2SND1
chr206145127961451335+CDS,intron-Proximal3.5291417.28253HepG2SRSF9
chr206146191761461940+CDS3.7695522.20255HepG2SND1
chr206146097961461020+CDS,intron-Proximal3.800716.65067HepG2GRSF1
chr206146847161468543+CDS3.2084018.03269HepG2SND1
chr206145755561457559+CDS,intron-Proximal3.7576922.28215HepG2PPIG
chr206145310861453142+CDS,intron-Proximal4.0185811.19394HepG2EFTUD2
chr206146083061460851+CDS3.803479.34513HepG2NOL12
chr206145251461452564+CDS,intron-Proximal3.8692117.20664HepG2EFTUD2
chr206145815861458171+CDS4.8348220.21658HepG2PABPN1
chr206146171961461743+CDS4.1371316.42776HepG2PABPN1
chr206146097961461032+CDS,intron-Proximal3.5629816.40311HepG2NOL12
chr206145717961457208+CDS3.384916.84448HepG2SDAD1
chr206145811861458122+CDS,intron-Proximal3.8174532.16522HepG2PPIG
chr206145756361457596+CDS4.7814724.90756HepG2PABPN1
chr206145929261459320+CDS4.1739619.87115HepG2PABPN1
chr206147195061471983+CDS3.7754516.87241HepG2SND1
chr206145253361452560+CDS3.4035912.36630HepG2SDAD1
chr206145721961457222+CDS3.8119821.40258HepG2PPIG
chr206147003561470050+CDS,intron-Proximal3.066247.39407HepG2SND1
chr206145579661455834+CDS,intron-Proximal3.7834713.25711HepG2PABPN1
chr206146013861460145+CDS3.6566321.06903HepG2PPIG
chr206145859261458614+CDS,intron-Proximal3.8645043.00791HepG2PPIG
chr206146843461468462+CDS,intron-Proximal4.931257.24590HepG2GRSF1
chr206145927261459277+CDS,intron-Proximal4.4482046.98771HepG2PPIG
chr206146762461467646+CDS3.236458.90073HepG2SND1
chr206146764661467668+CDS4.6991824.37701HepG2PABPN1
chr206145281561452899+CDS,intron-Proximal3.142358.64170HepG2AQR
chr206145061661450632+CDS4.4316936.61377HepG2PPIG
chr206145133161451334+CDS3.9237417.78510HepG2SRSF1
chr206145057261450598+CDS,intron-Proximal3.1507513.44373HepG2DDX3X
chr206145859261458637+CDS,intron-Proximal3.2721017.09168HepG2SND1
chr206146080661460822+CDS,intron-Proximal3.9250139.93259HepG2PPIG
chr206146114161461168+CDS4.1343478.17862HepG2PPIG
chr206145256461452568+CDS3.8163032.04050HepG2PPIG
chr206146350561463534+CDS,intron-Proximal3.6024141.89977HepG2PPIG
chr206146112161461141+CDS4.2626470.38006HepG2PPIG
chr206145063261450645+CDS4.8527343.87465HepG2PPIG
chr206146188561461913+CDS3.9186012.56412HepG2PABPN1
chr206145128061451291+CDS,intron-Proximal3.3993611.54665HepG2SND1
chr206145314361453161+CDS3.5035511.90146HepG2BUD13
chr206145814261458172+CDS3.8799021.81847HepG2SND1
chr206147204561472081+CDS3.115666.19768HepG2ZC3H11A
chr206145862261458632+CDS3.467928.97208HepG2PABPN1
chr206145931561459328+CDS4.8043111.82396HepG2SRSF1
chr206145812661458158+CDS4.7898526.26434HepG2PABPN1
chr206145285861452871+CDS,intron-Proximal3.7521115.66549HepG2SND1
chr206144987761449887+CDS3.360866.24036HepG2EIF3H
chr206145256461452568+CDS3.9516917.56585HepG2SND1
chr206146854361468617+CDS3.0824519.70246HepG2SND1
chr206145914361459303+CDS,intron-Distal,intron-Proximal3.6082258.92314HepG2SF3A3
chr206145311961453161+CDS3.388928.04683HepG2RPS3
chr206146845161468537+CDS3.9833028.62621HepG2PABPN1
chr206145253661452564+CDS3.6812267.41688HepG2PPIG
chr206145812561458159+CDS3.330274.02165HepG2FTO
chr206145927461459292+CDS,intron-Proximal3.7025118.33688HepG2PABPN1
chr206145759561457608+CDS3.574916.01641HepG2LSM11
chr206146112061461171+CDS3.6387412.59829HepG2NOL12
chr206145633261456352+CDS4.5963016.16365HepG2PABPN1
chr206145927661459315+CDS3.2872311.26020HepG2SRSF1
chr206146171161461725+CDS,intron-Proximal3.661208.41545HepG2SND1
chr206146765161467685+CDS4.1405915.77096HepG2LSM11
chr206146350661463531+CDS3.826027.78233HepG2SDAD1
chr206145132861451331+CDS4.2762327.64929HepG2SRSF1
chr206146112161461171+CDS3.180958.71117HepG2RPS3
chr206145756661457575+CDS4.2567042.05529HepG2PPIG
chr206146843861468462+CDS3.100769.33286HepG2LSM11
chr206146101361461027+CDS3.352475.18023HepG2GRWD1
chr206146030361460319+CDS3.5405611.50398HepG2PABPN1
chr206144986261449906+CDS,intron-Proximal3.461368.40081HepG2EFTUD2
chr206145815961458172+CDS3.3854512.76805HepG2SRSF1
chr206146102561461032+CDS3.219318.63554HepG2BUD13
chr206145689361456945+intron-Distal3.259127.10554HepG2RBFOX2
chr206146600961466065+intron-Distal3.966147.59188HepG2HNRNPC
chr206145880461458849+intron-Distal4.0551732.57372HepG2EFTUD2
chr206145653161456576+intron-Distal5.224637.34252HepG2PCBP2
chr206145877961458817+intron-Distal3.375943.28035HepG2NCBP2
chr206145147261451499+intron-Distal4.136634.36133HepG2CSTF2T
chr206145958161459645+intron-Distal4.065763.41442HepG2HNRNPK
chr206147149961471610+intron-Distal5.115288.24380HepG2HNRNPK
chr206145221161452287+intron-Distal3.628263.90287HepG2SF3B4
chr206146212061462250+intron-Distal4.6930531.23369HepG2DDX59
chr206147112761471178+intron-Distal5.040256.17200HepG2PCBP2
chr206145414861454213+intron-Distal3.859763.31570HepG2HNRNPK
chr206145651461456601+intron-Distal7.1646764.26546HepG2FAM120A
chr206145664861456688+intron-Distal4.021708.51847HepG2FAM120A
chr206147117361471246+intron-Distal3.794794.59945HepG2HNRNPK
chr206145870861458848+intron-Distal,intron-Proximal3.5424852.33398HepG2RBFOX2
chr206146229561462365+intron-Distal3.741197.70253HepG2HNRNPK
chr206145158261451610+intron-Distal5.060049.50259HepG2EFTUD2
chr206146200961462048+intron-Distal,intron-Proximal5.625699.78105HepG2DDX59
chr206145201861452085+intron-Distal4.7050819.32895HepG2EFTUD2
chr206145326261453298+intron-Distal4.381285.67291HepG2U2AF2
chr206147113061471173+intron-Distal4.259094.10192HepG2HNRNPK
chr206145213961452164+intron-Distal3.408793.72734HepG2CSTF2T
chr206145652961456616+intron-Distal3.9347020.50643HepG2CSTF2T
chr206145846961458539+intron-Distal,intron-Proximal3.519514.84707HepG2HNRNPK
chr206146226761462393+intron-Distal4.6962137.38069HepG2DDX59
chr206145357061453621+intron-Distal,intron-Proximal4.041053.31570HepG2HNRNPK
chr206145660361456694+intron-Distal3.2187314.76533HepG2RBFOX2
chr206145651761456603+intron-Distal6.0168133.25754HepG2RBFOX2
chr206146213561462213+intron-Distal4.4687917.57700HepG2HNRNPK
chr206145652961456609+intron-Distal3.743487.96684HepG2DROSHA
chr206145870761458812+intron-Distal,intron-Proximal3.091567.57175HepG2SUPV3L1
chr206145884861458947+intron-Distal3.3966313.72416HepG2RBFOX2
chr206145670561456764+intron-Distal,intron-Proximal3.7186314.39825HepG2RBFOX2
chr206145870861458845+intron-Distal,intron-Proximal3.0490958.59152HepG2PRPF8
chr206145671961456815+intron-Distal,intron-Proximal4.399329.65481HepG2PRPF4
chr206145653861456584+intron-Distal3.639477.68542HepG2XRN2
chr206145872161458836+intron-Distal,intron-Proximal4.5996420.81198HepG2PRPF4
chr206147119461471252+intron-Distal3.861475.00478HepG2PCBP2
chr206146259061462635+intron-Distal4.5204110.98479HepG2DDX59
chr206145223061452274+intron-Distal4.856938.06849HepG2PRPF4
chr206144880161448889+intron-Distal,intron-Proximal4.0259212.32966HepG2NCBP2
chr206146249761462525+intron-Distal3.794637.65902HepG2DDX59
chr206145869561458804+intron-Distal,intron-Proximal4.3350856.65257HepG2EFTUD2
chr206145225761452287+intron-Distal7.0355923.95590HepG2EFTUD2
chr206145959161459626+intron-Distal5.3037311.71593HepG2EFTUD2
chr206145222661452257+intron-Distal6.2113225.61592HepG2EFTUD2
chr206145694561456994+intron-Distal3.494706.99379HepG2RBFOX2
chr206145679861456857+intron-Distal,intron-Proximal4.1705215.98160HepG2RBFOX2
chr206146818461468236+intron-Distal3.456083.70624HepG2HNRNPK
chr206145876961458826+intron-Distal3.310997.82875HepG2UCHL5
chr206146207761462135+intron-Distal6.2877711.14982HepG2HNRNPK
chr206145903861459094+intron-Distal3.8525911.86473HepG2GRWD1
chr206146198861462077+intron-Distal,intron-Proximal5.8332016.92155HepG2HNRNPK
chr206145676461456798+intron-Distal,intron-Proximal3.6150410.22219HepG2RBFOX2
chr206145653661456596+intron-Distal5.042288.82769HepG2PRPF4
chr206145906261459088+intron-Distal3.335668.25826HepG2SRSF1
chr206145323861453309+intron-Distal,intron-Proximal4.310644.83379HepG2HNRNPK
chr206145652561456641+intron-Distal4.1628235.03549HepG2PRPF8
chr206145202061452072+intron-Distal3.413823.23106HepG2CDC40
chr206146778061467807+intron-Distal,intron-Proximal3.381633.57857HepG2SF3B4
chr206145401361454064+intron-Proximal4.568743.90539HepG2RBM22
chr206145280661452849+intron-Proximal4.8141113.00415HepG2EFTUD2
chr206145352361453559+intron-Proximal4.6656615.42046HepG2PRPF8
chr206145358561453599+intron-Proximal3.958563.19526HepG2CSTF2T
chr206144900361449021+intron-Proximal3.2052415.21098HepG2PRPF8
chr206145138161451405+intron-Proximal5.2059013.24402HepG2PRPF8
chr206145067861450724+intron-Proximal4.746488.89218HepG2RBM22
chr206145135861451416+intron-Proximal4.4214310.79428HepG2RBM22
chr206145305661453103+intron-Proximal4.6412516.66170HepG2SF3A3
chr206146020861460263+intron-Proximal4.086906.98946HepG2SF3B4
chr206146088061460935+intron-Proximal5.132769.51601HepG2SF3B4
chr206144982561449849+intron-Proximal4.725176.49692HepG2SF3A3
chr206147184761471875+intron-Proximal4.128263.98427HepG2SF3B4
chr206145136461451379+intron-Proximal4.6932618.94550HepG2PRPF8
chr206145318361453199+intron-Proximal5.8990810.35592HepG2EFTUD2
chr206145574561455797+intron-Proximal4.8900412.27453HepG2SF3B4
chr206145920861459266+intron-Proximal4.2478431.22087HepG2EFTUD2
chr206145304661453100+intron-Proximal4.8610719.98569HepG2SF3B4
chr206145627561456310+intron-Proximal3.977567.23600HepG2SF3B4
chr206145710261457135+intron-Proximal3.089865.08270HepG2SF3B4
chr206145712761457168+intron-Proximal5.4710016.05127HepG2SF3A3
chr206146103861461047+intron-Proximal4.5725117.14065HepG2PRPF8
chr206145585361455873+intron-Proximal3.6684015.17624HepG2PRPF8
chr206145919361459270+intron-Proximal4.8630547.39321HepG2SF3B4
chr206145135861451409+intron-Proximal4.5216320.55644HepG2EFTUD2
chr206145066961450707+intron-Proximal4.6813226.41456HepG2PRPF8
chr206145066661450710+intron-Proximal5.4998915.28751HepG2EFTUD2
chr206146745761467531+intron-Proximal4.1230810.83080HepG2SF3B4
chr206145123661451270+intron-Proximal4.9920515.32029HepG2EFTUD2
chr206146090161460939+intron-Proximal6.3728412.57895HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for COL9A3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for COL9A3 is not available on ENCORE database.

  • 93 RBPs can affect the levels of COL9A3.  








The Knockdown/knockout RNA-Seq assay for COL9A3 is not available on ENCORE database.





93 RBPs can affect the gene expression of COL9A3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
COL9A3ENSG00000092758.111845.426903727.96810-1.014403.564702.50200HepG2ABCF1
COL9A3ENSG00000092758.116658.070604850.431300.4569014.5711013.40920HepG2ACO1
COL9A3ENSG00000092758.111978.45890819.624101.271203.237602.16390HepG2ADAR
COL9A3ENSG00000092758.114148.376704873.54840-0.232403.409402.56950HepG2AKAP8L
COL9A3ENSG00000092758.112601.366104641.61080-0.835404.329403.50460HepG2AUH
COL9A3ENSG00000092758.11459.216401797.51850-1.968805.669104.84970HepG2BOP1
COL9A3ENSG00000092758.11871.529501956.44870-1.1666015.0769013.52780HepG2CALR
COL9A3ENSG00000092758.113543.715004849.77210-0.452709.758908.66360HepG2CKAP4
COL9A3ENSG00000092758.115937.784103068.090200.952508.509906.68070HepG2CPSF7
COL9A3ENSG00000092758.111075.67580840.511300.355803.630102.46370HepG2YBX3
COL9A3ENSG00000092758.113682.299501805.212401.0283025.3915023.84860HepG2CELF1
COL9A3ENSG00000092758.111368.736701940.73400-0.503806.783905.69860HepG2DAZAP1
COL9A3ENSG00000092758.113249.476904486.13560-0.4653013.9710012.40420HepG2DDX19B
COL9A3ENSG00000092758.114050.265706595.16410-0.7034012.6011010.18250HepG2DDX47
COL9A3ENSG00000092758.113100.242901377.149201.170603.118402.30450HepG2DDX55
COL9A3ENSG00000092758.111311.148802331.29900-0.830306.472404.98330HepG2DDX5
COL9A3ENSG00000092758.116391.385701704.884001.9064010.812809.68320HepG2DDX6
COL9A3ENSG00000092758.11476.22380796.02420-0.741203.066402.03910HepG2DHX30
COL9A3ENSG00000092758.113022.267604640.65050-0.6187019.7697018.34320HepG2DKC1
COL9A3ENSG00000092758.111951.82150818.028001.2545061.7621058.98600HepG2DNAJC2
COL9A3ENSG00000092758.114140.119902826.506000.550604.075202.66540HepG2EIF2S2
COL9A3ENSG00000092758.11680.381001809.23790-1.411003.104002.42790HepG2EIF4A3
COL9A3ENSG00000092758.11920.595101914.92250-1.0566014.2910012.68110HepG2EIF4G1
COL9A3ENSG00000092758.112044.909203228.10270-0.658603.198602.02650HepG2ESF1
COL9A3ENSG00000092758.113621.141104740.08860-0.388502.310201.54810HepG2EWSR1
COL9A3ENSG00000092758.111437.896503266.43760-1.1838011.9060010.33080HepG2FUBP3
COL9A3ENSG00000092758.114242.662901827.279001.215202.722202.03680HepG2FXR1
COL9A3ENSG00000092758.112338.333701258.430800.893804.004002.30630HepG2HNRNPAB
COL9A3ENSG00000092758.115136.257501717.686501.5802016.0646014.52400HepG2HNRNPK
COL9A3ENSG00000092758.114124.469801767.765301.2222026.2114024.36890HepG2HNRNPL
COL9A3ENSG00000092758.111467.37490920.687000.672401.953701.43560HepG2HNRNPU
COL9A3ENSG00000092758.111385.27760940.451800.558608.083106.89750HepG2ILF2
COL9A3ENSG00000092758.113270.706001452.156901.171304.142502.63340HepG2KHDRBS1
COL9A3ENSG00000092758.111613.652402683.38180-0.733703.288801.92140HepG2KRR1
COL9A3ENSG00000092758.117233.474804099.968300.819009.775408.21600HepG2LARP4
COL9A3ENSG00000092758.112012.022101152.089400.804302.531701.44770HepG2LARP7
COL9A3ENSG00000092758.112913.953101837.857500.664902.162601.60130HepG2MATR3
COL9A3ENSG00000092758.111689.277603044.48870-0.849804.744303.70530HepG2MSI2
COL9A3ENSG00000092758.113500.253101924.444600.862904.107203.17790HepG2NOL12
COL9A3ENSG00000092758.114161.145201265.765001.716909.045807.02560HepG2NONO
COL9A3ENSG00000092758.112789.874501391.352001.003604.187603.08040HepG2PABPC1
COL9A3ENSG00000092758.111600.25810911.326800.8122013.9685012.31140HepG2PARN
COL9A3ENSG00000092758.113782.093701875.035801.0122018.3738017.03180HepG2PCBP1
COL9A3ENSG00000092758.113143.66170821.179801.9366034.9483032.60250HepG2PPIL4
COL9A3ENSG00000092758.111434.867302183.16110-0.605502.607601.85480HepG2PRPF4
COL9A3ENSG00000092758.113048.784701908.176100.675903.493902.89450HepG2PTBP1
COL9A3ENSG00000092758.115718.760201950.303901.5519034.4657032.84750HepG2PUM1
COL9A3ENSG00000092758.114046.419304940.53670-0.288002.589101.98750HepG2PUS1
COL9A3ENSG00000092758.11708.198102066.05400-1.544706.442105.54540HepG2QKI
COL9A3ENSG00000092758.112048.357504454.60010-1.120809.536708.70540HepG2RBM22
COL9A3ENSG00000092758.114194.295501389.382001.5939017.0725014.65670HepG2RBM27
COL9A3ENSG00000092758.112511.409901128.253801.154303.840202.58510HepG2RCC2
COL9A3ENSG00000092758.113146.864202123.403200.567403.370802.78630HepG2NELFE
COL9A3ENSG00000092758.114045.571501978.048901.032206.173105.30240HepG2RECQL
COL9A3ENSG00000092758.111290.850202420.35470-0.906904.149603.34050HepG2RPLP0
COL9A3ENSG00000092758.112575.591601281.118101.007404.263403.27740HepG2RPS2
COL9A3ENSG00000092758.112500.812201530.097000.708702.317601.58320HepG2RPS3A
COL9A3ENSG00000092758.112636.536801308.023901.011204.194002.85780HepG2RPS5
COL9A3ENSG00000092758.111996.63370819.914501.283906.360405.44370HepG2SAFB2
COL9A3ENSG00000092758.113033.242301440.787501.073903.814202.28350HepG2SART3
COL9A3ENSG00000092758.112543.660001986.196700.356802.068901.54620HepG2SF3B4
COL9A3ENSG00000092758.114451.886001761.736601.3373012.0702010.78100HepG2SLBP
COL9A3ENSG00000092758.112771.31450956.162301.53510108.84910106.12460HepG2SMN1
COL9A3ENSG00000092758.112236.171805031.08170-1.1698011.0675010.24630HepG2SRFBP1
COL9A3ENSG00000092758.11720.350702073.34750-1.525208.764808.02970HepG2SRSF1
COL9A3ENSG00000092758.114906.516901814.027101.4354025.7230024.08780HepG2SRSF5
COL9A3ENSG00000092758.112282.250201686.940600.435902.441801.91620HepG2SRSF9
COL9A3ENSG00000092758.11819.400204367.77690-2.4143030.0126028.73350HepG2SSB
COL9A3ENSG00000092758.113773.467302676.454400.495502.940701.61990HepG2SSRP1
COL9A3ENSG00000092758.111187.417902512.41540-1.081206.437804.64930HepG2STAU1
COL9A3ENSG00000092758.113719.235101331.822201.4815010.152107.90880HepG2STIP1
COL9A3ENSG00000092758.113542.840202062.944500.780106.048105.19250HepG2SUCLG1
COL9A3ENSG00000092758.111400.021902708.54590-0.952104.807303.05120HepG2SUGP2
COL9A3ENSG00000092758.111850.860202540.05030-0.456702.203501.36050HepG2SUPT6H
COL9A3ENSG00000092758.11876.336101864.12750-1.088904.997604.28050HepG2TAF15
COL9A3ENSG00000092758.11993.550502628.83640-1.403804.122202.83800HepG2TBRG4
COL9A3ENSG00000092758.114718.88510902.615802.3862012.6154011.53860HepG2TRIM56
COL9A3ENSG00000092758.114893.637001794.971001.446804.177003.07630HepG2TUFM
COL9A3ENSG00000092758.111237.618003218.78350-1.378907.314906.30060HepG2U2AF1
COL9A3ENSG00000092758.113256.004601900.057500.777004.934903.79350HepG2UBE2L3
COL9A3ENSG00000092758.112287.53810809.383801.498804.821803.81430HepG2UCHL5
COL9A3ENSG00000092758.111208.692202965.44520-1.2948011.8865010.62240HepG2UPF1
COL9A3ENSG00000092758.112051.894203047.93170-0.570904.190302.93460HepG2UTP18
COL9A3ENSG00000092758.111344.706002862.99400-1.090209.971308.94650HepG2UTP3
COL9A3ENSG00000092758.112528.752001370.642600.883504.088102.74950HepG2XPO5
COL9A3ENSG00000092758.112713.791501349.181101.008103.016802.26010HepG2XRN2
COL9A3ENSG00000092758.111031.998602154.33090-1.061808.197407.14440HepG2ZC3H8
COL9A3ENSG00000092758.111611.897203261.39740-1.016709.468208.60930HepG2ZNF622
COL9A3ENSG00000092758.112562.393301299.730500.979202.919401.58270HepG2ZRANB2
COL9A3ENSG00000092758.1140.7802018.532501.137702.177501.37520K562ATP5C1
COL9A3ENSG00000092758.111.4217023.01860-4.017105.107504.32030K562FXR1
COL9A3ENSG00000092758.1147.1380020.994601.166802.370401.53790K562MBNL1
COL9A3ENSG00000092758.1132.457402.342403.792405.458604.12960K562PSIP1
COL9A3ENSG00000092758.1119.073902.253303.081403.245402.22600K562TIAL1
COL9A3ENSG00000092758.1116.368802.390802.775302.422801.54750K562TRIM56
COL9A3ENSG00000092758.1157.3402026.318201.123402.713101.85980K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for COL9A3 is not available on ENCORE database.





27 RBPs can affect the splicing of COL9A3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECOL9A3ENSG00000092758.11chr20+6145081161451055614505736145064561451280614513340.073000.001430.03585includedHepG2HNRNPK
SECOL9A3ENSG00000092758.11chr20+614678296146788461467538614676856146843461468617-0.116000.004350.04763excludedHepG2U2AF2
SECOL9A3ENSG00000092758.11chr20+614678296146788461467538614676856146843461468617-0.083000.000000.00000excludedHepG2SF3B4
RICOL9A3ENSG00000092758.11chr20+614675386146788461467538614676856146782961467884-0.093000.000000.00000excludedHepG2HNRNPL
RICOL9A3ENSG00000092758.11chr20+6146753861467884614675386146768561467829614678840.056000.003050.05332includedHepG2PCBP2
RICOL9A3ENSG00000092758.11chr20+6146753861467884614675386146768561467829614678840.060000.000010.00028includedHepG2SF3A3
RICOL9A3ENSG00000092758.11chr20+6146753861467884614675386146768561467829614678840.230000.000000.00006includedHepG2U2AF2
RICOL9A3ENSG00000092758.11chr20+6146753861467884614675386146768561467829614678840.089000.000000.00000includedHepG2PRPF4
RICOL9A3ENSG00000092758.11chr20+6146753861467884614675386146768561467829614678840.082000.003490.04070includedHepG2PRPF8
RICOL9A3ENSG00000092758.11chr20+614675386146788461467538614676856146782961467884-0.106000.000000.00000excludedHepG2NOL12
RICOL9A3ENSG00000092758.11chr20+6146706261467305614670626146717661467272614673050.560000.000600.06361includedHepG2DDX55
RICOL9A3ENSG00000092758.11chr20+6146753861467884614675386146768561467829614678840.079000.000000.00002includedHepG2SRSF1
RICOL9A3ENSG00000092758.11chr20+6146753861467884614675386146768561467829614678840.101000.000000.00000includedHepG2TAF15
RICOL9A3ENSG00000092758.11chr20+6146753861467884614675386146768561467829614678840.105000.000000.00000includedHepG2U2AF1
RICOL9A3ENSG00000092758.11chr20+614675386146788461467538614676856146782961467884-0.066000.000530.03420excludedHepG2HNRNPU
RICOL9A3ENSG00000092758.11chr20+6146753861467884614675386146768561467829614678840.054000.000720.00965includedHepG2RBM22
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146782961467884614672726146730561468434614686170.141000.000440.038901includedHepG2UCHL5
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146771161467884614670626146730561468434614686170.158000.000360.033821includedHepG2UCHL5
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146774661467884614670626146730561468434614686170.158000.000360.033821includedHepG2UCHL5
MXECOL9A3ENSG00000092758.11chr20+61449869614499056145057361450645614487946144898761451280614513340.191000.000070.015911includedHepG2SUGP2
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146782961467884614672726146730561468434614686170.150000.000010.000801includedHepG2XPO5
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146782961467884614672726146730561468434614686170.124000.000580.031551includedHepG2BCCIP
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146771161467884614670626146730561468434614686170.131000.000940.042981includedHepG2BCCIP
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146775061467884614670626146730561468434614686170.131000.000940.042981includedHepG2BCCIP
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146774661467884614670626146730561468434614686170.131000.000940.042981includedHepG2BCCIP
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146771161467884614670626146730561468434614686170.110000.001120.066111includedHepG2NOL12
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146775061467884614670626146730561468434614686170.110000.001120.066111includedHepG2NOL12
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146774661467884614670626146730561468434614686170.110000.001060.066111includedHepG2NOL12
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146782961467884614672726146730561468434614686170.113000.001810.049111includedHepG2XRN2
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146775061467884614670626146730561468434614686170.117000.003100.067781includedHepG2XRN2
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146774661467884614670626146730561468434614686170.115000.003370.071451includedHepG2XRN2
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146782961467884614672726146730561468434614686170.175000.000020.001191includedHepG2DDX55
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146774661467884614670626146730561468434614686170.183000.000040.001891includedHepG2DDX55
MXECOL9A3ENSG00000092758.11chr20+6146753861467685614677466146788461467062614673056146843461468617-0.188000.016940.081822includedHepG2U2AF2
MXECOL9A3ENSG00000092758.11chr20+6145579661455853614563196145637361453942614539846145716861457222-0.105000.002070.063922includedHepG2SF3B4
MXECOL9A3ENSG00000092758.11chr20+6146753861467685614678296146788461467272614673056146843461468617-0.350000.003270.047722includedHepG2HNRNPUL1
MXECOL9A3ENSG00000092758.11chr20+6146753861467685614677466146788461467062614673056146843461468617-0.348000.000810.016072includedHepG2HNRNPUL1
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146782961467884614672726146730561468434614686170.158000.000040.003101includedHepG2HNRNPC
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146774661467884614670626146730561468434614686170.161000.000160.008911includedHepG2HNRNPC
MXECOL9A3ENSG00000092758.11chr20+61449869614499056145057361450645614487946144898761451280614513340.156000.000220.035461includedHepG2DDX52
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146782961467884614672726146730561468434614686170.158000.000020.001501includedHepG2HNRNPU
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146782961467884614672726146730561468434614686170.083000.000920.025561includedHepG2HNRNPK
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146782961467884614672726146730561468434614686170.109000.000320.036891includedHepG2ILF3
MXECOL9A3ENSG00000092758.11chr20+6145057361450645614512806145133461449869614499056145253261452568-0.152000.000320.024662includedHepG2LARP4
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146771161467884614670626146730561468434614686170.099000.002420.078861includedHepG2HNRNPL
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146775061467884614670626146730561468434614686170.099000.002420.078861includedHepG2HNRNPL
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146774661467884614670626146730561468434614686170.099000.002300.076511includedHepG2HNRNPL
MXECOL9A3ENSG00000092758.11chr20+61448918614489876144986961449905614484136144849461450573614506450.241000.000000.000291includedHepG2NCBP2
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146782961467884614672726146730561468434614686170.202000.000000.000131includedHepG2TIAL1
MXECOL9A3ENSG00000092758.11chr20+61467538614676856146774661467884614670626146730561468434614686170.218000.000000.000301includedHepG2TIAL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for COL9A3 is not avaliable on ENCORE database.