CLIP1

General Information

Gene Name       : CLIP1
Gene ID             : ENSG00000130779.20
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CLIP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CLIP1ENSG00000130779.2026.5127.1826.84ENCSR000AEF
HepG2CLIP1ENSG00000130779.2021.4123.8722.64ENCSR985KAT
K562CLIP1ENSG00000130779.2019.7518.5819.16ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CLIP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CLIP1 RNA is bound by 15 proteins.  







eCLIP assay for CLIP1 is not avaliable on ENCORE database.





15 proteins are bound to CLIP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12122865016122865077-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.713114.49887K562ZNF622
chr12122839654122839779-3'-UTR,CDS,intron-Distal,intron-Proximal3.713116.84505K562ZNF622
chr12122865020122865106-3'-UTR,5'-UTR,intron-Distal,intron-Proximal5.028927.69727K562UCHL5
chr12122839659122839724-3'-UTR,CDS,intron-Distal,intron-Proximal3.085853.70975K562UCHL5
chr12122757094122757156-3'-UTR,intron-Distal,intron-Proximal3.986837.86160K562PUM2
chr12122756122122756231-3'-UTR,intron-Distal6.4171329.15011K562PUM2
chr12122760970122761050-5'-UTR,CDS,intron-Distal4.651575.47569HepG2U2AF2
chr12122794313122794375-CDS,intron-Distal4.768544.72838K562UCHL5
chr12122812633122812710-CDS,intron-Distal,intron-Proximal3.152333.02345K562ZNF622
chr12122862057122862178-CDS,intron-Distal,intron-Proximal3.176644.02291HepG2GRWD1
chr12122763576122763693-CDS,intron-Distal,intron-Proximal3.282594.49042K562PUM1
chr12122861963122862053-CDS,intron-Distal3.791043.56019HepG2GRWD1
chr12122763572122763685-CDS,intron-Distal,intron-Proximal3.204283.39306HepG2GRWD1
chr12122826138122826208-CDS,intron-Distal3.206404.12796K562LIN28B
chr12122825304122825375-CDS,intron-Distal5.093567.69727K562UCHL5
chr12122803794122803896-CDS,intron-Distal,intron-Proximal4.531094.14322HepG2FXR2
chr12122801332122801403-CDS,intron-Distal,intron-Proximal4.533784.37348HepG2BCLAF1
chr12122825346122825427-CDS,intron-Distal3.820493.56019HepG2GRWD1
chr12122821131122821234-CDS,intron-Distal,intron-Proximal4.419624.58968K562PRPF8
chr12122819194122819253-CDS,intron-Distal,intron-Proximal5.6445812.52114K562UCHL5
chr12122812496122812578-CDS,intron-Distal4.755786.15968K562UCHL5
chr12122818628122818658-CDS,intron-Distal,intron-Proximal4.434834.16170K562UCHL5
chr12122803800122803896-CDS,intron-Distal,intron-Proximal4.268548.23108K562UCHL5
chr12122838997122839079-CDS,intron-Distal,intron-Proximal3.586666.09767K562UCHL5
chr12122801312122801386-CDS,intron-Distal4.157823.36385K562UCHL5
chr12122825838122826029-CDS,intron-Distal3.305336.65904HepG2GRWD1
chr12122812806122812838-CDS,intron-Distal,intron-Proximal3.161093.12941K562UCHL5
chr12122837288122837316-CDS,intron-Distal3.778325.77244K562UCHL5
chr12122862179122862231-CDS,intron-Distal,intron-Proximal3.200854.08171K562YBX3
chr12122794306122794375-CDS,intron-Distal,intron-Proximal3.170594.74755K562ZNF622
chr12122862346122862488-CDS,intron-Distal4.242787.79539K562UCHL5
chr12122862391122862458-CDS,intron-Distal3.119915.44868K562ZNF622
chr12122821247122821299-CDS,intron-Distal,intron-Proximal3.255563.36945K562ZNF622
chr12122812509122812705-CDS,intron-Distal4.053155.85660K562TRA2A
chr12122825404122825457-CDS,intron-Distal,intron-Proximal4.567344.34038HepG2BCLAF1
chr12122821281122821349-CDS,intron-Distal,intron-Proximal5.263997.71913HepG2U2AF2
chr12122819195122819255-CDS,intron-Distal,intron-Proximal4.097816.94741K562ZNF622
chr12122817533122817570-CDS,intron-Distal,intron-Proximal3.847073.04254K562UCHL5
chr12122838999122839073-CDS,intron-Distal,intron-Proximal3.280876.78413K562ZNF622
chr12122794377122794429-CDS,intron-Distal3.261623.55800HepG2BCLAF1
chr12122819190122819250-CDS,intron-Distal,intron-Proximal3.176663.71797HepG2BCLAF1
chr12122758583122758642-CDS,intron-Distal,intron-Proximal4.094593.43980K562ZNF622
chr12122812633122812710-CDS,intron-Distal,intron-Proximal4.066167.23632K562UCHL5
chr12122825299122825365-CDS,intron-Distal,intron-Proximal4.720394.70478HepG2BCLAF1
chr12122812682122812710-CDS,intron-Distal,intron-Proximal4.130113.38968HepG2BCLAF1
chr12122862339122862412-CDS,intron-Distal,intron-Proximal3.008143.55800HepG2BCLAF1
chr12122825375122825441-CDS,intron-Distal,intron-Proximal3.239866.54511K562UCHL5
chr12122812807122812901-CDS,intron-Distal,intron-Proximal4.533784.37348HepG2BCLAF1
chr12122861935122862013-CDS,intron-Distal,intron-Proximal3.156344.34695HepG2BCLAF1
chr12122794375122794425-CDS,intron-Distal4.494803.04254K562UCHL5
chr12122817570122817692-CDS,intron-Distal,intron-Proximal3.267144.61143K562UCHL5
chr12122825478122825539-CDS,intron-Distal,intron-Proximal3.352105.39086K562UCHL5
chr12122763287122763339-intron-Distal,intron-Proximal5.485298.93723HepG2PRPF8
chr12122906848122906923-intron-Distal3.501783.71694HepG2NKRF
chr12122812387122812488-intron-Distal,intron-Proximal3.324933.54718K562PRPF8
chr12122906663122906712-intron-Distal3.313183.95205HepG2NKRF
chr12122834261122834351-intron-Distal3.530804.49647HepG2RBFOX2
chr12122832029122832138-intron-Distal,intron-Proximal4.323287.68118HepG2RBFOX2
chr12122763268122763339-intron-Distal,intron-Proximal5.904328.34710K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CLIP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CLIP1 is not available on ENCORE database.

  • 101 RBPs can affect the levels of CLIP1.  








The Knockdown/knockout RNA-Seq assay for CLIP1 is not available on ENCORE database.





101 RBPs can affect the gene expression of CLIP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CLIP1ENSG00000130779.151654.193601139.934400.5371011.2699010.21840HepG2ACO1
CLIP1ENSG00000130779.15490.08770914.01210-0.8992011.133809.31450HepG2ADAR
CLIP1ENSG00000130779.151773.248901145.246500.630609.319408.01190HepG2AKAP8L
CLIP1ENSG00000130779.15713.907201075.11410-0.590704.519803.32100HepG2BCCIP
CLIP1ENSG00000130779.151634.603301332.522500.294702.424301.69830HepG2CALR
CLIP1ENSG00000130779.15851.297901327.66440-0.641203.998503.07270HepG2CNOT7
CLIP1ENSG00000130779.151349.58380893.812500.594406.846505.82850HepG2DDX21
CLIP1ENSG00000130779.151512.57450874.361300.7906013.3195011.38410HepG2DDX24
CLIP1ENSG00000130779.151365.30380989.046600.465003.050001.70160HepG2DDX27
CLIP1ENSG00000130779.15590.28650800.75610-0.439902.908601.48050HepG2DDX28
CLIP1ENSG00000130779.15745.658301057.06710-0.503503.446902.59470HepG2DDX55
CLIP1ENSG00000130779.152057.457901436.180100.518504.275603.52110HepG2DDX6
CLIP1ENSG00000130779.151840.058301090.594700.7545019.0680017.65840HepG2DKC1
CLIP1ENSG00000130779.15586.86190912.23310-0.6364011.5342010.30270HepG2DNAJC2
CLIP1ENSG00000130779.151453.06050950.518900.612206.281604.94400HepG2EEF2
CLIP1ENSG00000130779.151444.05090843.859500.7749012.8734010.90850HepG2EIF3G
CLIP1ENSG00000130779.152149.720801526.184800.494104.096903.32280HepG2EIF4A3
CLIP1ENSG00000130779.152383.134601485.710400.681605.481704.53610HepG2EIF4B
CLIP1ENSG00000130779.151757.083601324.648200.407506.481505.29550HepG2EIF4G1
CLIP1ENSG00000130779.151998.785801419.140300.494003.717102.46160HepG2ESF1
CLIP1ENSG00000130779.153942.202201899.603401.0532048.7335046.79880HepG2ETF1
CLIP1ENSG00000130779.152461.398801653.741200.573603.732502.84720HepG2FIP1L1
CLIP1ENSG00000130779.151940.074701516.043000.355702.360101.54180HepG2G3BP2
CLIP1ENSG00000130779.151042.11380686.979700.601105.735304.44210HepG2GEMIN5
CLIP1ENSG00000130779.153271.996802038.331500.682708.206307.14560HepG2GPKOW
CLIP1ENSG00000130779.151785.68630929.187600.942306.453405.52690HepG2HNRNPA1
CLIP1ENSG00000130779.15864.638901233.91340-0.513107.189205.80270HepG2HNRNPA2B1
CLIP1ENSG00000130779.15963.952401445.79350-0.584806.197805.18290HepG2HNRNPK
CLIP1ENSG00000130779.15747.068301222.88690-0.7110015.6499014.16430HepG2HNRNPL
CLIP1ENSG00000130779.152715.048001945.210200.481005.019004.19720HepG2HNRNPLL
CLIP1ENSG00000130779.151776.389801451.895000.290901.908501.33750HepG2IGF2BP2
CLIP1ENSG00000130779.152298.750401540.004300.577806.074305.11070HepG2MAGOH
CLIP1ENSG00000130779.151190.591401548.68660-0.379401.829601.31110HepG2MATR3
CLIP1ENSG00000130779.151765.618201339.271800.398602.425301.66570HepG2MSI2
CLIP1ENSG00000130779.15596.85090829.00110-0.474003.834202.14820HepG2NIP7
CLIP1ENSG00000130779.153293.953201724.744400.9333018.5236016.79830HepG2NSUN2
CLIP1ENSG00000130779.151747.537001213.357500.526202.684801.81230HepG2PABPC1
CLIP1ENSG00000130779.152199.954601411.975800.639703.653402.83070HepG2PABPC4
CLIP1ENSG00000130779.151169.592601465.50150-0.325404.092403.38110HepG2PCBP1
CLIP1ENSG00000130779.151495.254701208.106000.307503.487202.62920HepG2PRPF4
CLIP1ENSG00000130779.151227.37080815.408100.589905.340804.25400HepG2PRPF8
CLIP1ENSG00000130779.151691.002701270.856100.412001.894101.38750HepG2PUF60
CLIP1ENSG00000130779.152186.530201348.107000.6976014.0121012.57500HepG2PUM2
CLIP1ENSG00000130779.151675.268501161.089400.5288010.974309.88650HepG2PUS1
CLIP1ENSG00000130779.152477.401901615.019300.6172011.8774010.71640HepG2QKI
CLIP1ENSG00000130779.152557.927601109.192601.2054011.6895010.31500HepG2RAVER1
CLIP1ENSG00000130779.151961.586501599.579500.294203.018802.12540HepG2RBM15
CLIP1ENSG00000130779.152296.594001587.695600.532509.850209.00920HepG2RBM22
CLIP1ENSG00000130779.151760.728701465.726100.264502.091801.49990HepG2RBM25
CLIP1ENSG00000130779.152119.008401659.562600.352505.048404.35400HepG2NELFE
CLIP1ENSG00000130779.152272.330001712.020600.408402.619201.95170HepG2RPLP0
CLIP1ENSG00000130779.151633.244001089.619600.583803.741002.64380HepG2RPS10
CLIP1ENSG00000130779.15915.25990750.813100.285601.842701.33100HepG2RPS19
CLIP1ENSG00000130779.151135.24800806.604100.493003.489302.62090HepG2RRP9
CLIP1ENSG00000130779.151230.82710753.502600.707808.214306.62280HepG2SERBP1
CLIP1ENSG00000130779.152442.903701925.418800.343303.055602.31460HepG2SF3B1
CLIP1ENSG00000130779.151220.178201066.272900.194401.857201.31260HepG2SMN1
CLIP1ENSG00000130779.152687.196501793.206100.5835015.8472014.90700HepG2SRFBP1
CLIP1ENSG00000130779.152474.633201620.510300.6107015.8365014.90270HepG2SRSF1
CLIP1ENSG00000130779.151701.977001318.365300.368405.645204.90560HepG2SRSF9
CLIP1ENSG00000130779.153701.559101556.861701.2494070.8271069.12360HepG2SSB
CLIP1ENSG00000130779.151613.599401036.575200.638404.466302.92690HepG2SUB1
CLIP1ENSG00000130779.152025.155401427.056700.504907.449306.50870HepG2SUCLG1
CLIP1ENSG00000130779.153457.267801052.284201.7160041.3947039.39470HepG2SUPV3L1
CLIP1ENSG00000130779.152594.727901456.558200.8329022.8819021.48960HepG2TAF15
CLIP1ENSG00000130779.151202.068701895.77130-0.657308.631507.45020HepG2TARDBP
CLIP1ENSG00000130779.15537.42490705.30320-0.392202.461201.51440HepG2TFIP11
CLIP1ENSG00000130779.151524.71150997.656100.611809.606308.77240HepG2TIAL1
CLIP1ENSG00000130779.151651.364901241.670300.411302.759501.88790HepG2TUFM
CLIP1ENSG00000130779.153407.464501415.147501.2676018.6048016.91990HepG2U2AF1
CLIP1ENSG00000130779.151684.522901314.352800.357902.399301.62370HepG2UBE2L3
CLIP1ENSG00000130779.15473.32710621.61000-0.393202.286201.59560HepG2UCHL5
CLIP1ENSG00000130779.151765.259101541.576000.195402.071801.45240HepG2UPF1
CLIP1ENSG00000130779.151976.437501488.324200.409107.096406.21230HepG2UTP3
CLIP1ENSG00000130779.151590.755301193.756000.414102.360301.35660HepG2XPO5
CLIP1ENSG00000130779.151854.618001219.847600.604304.380303.06040HepG2XRCC6
CLIP1ENSG00000130779.151448.319401192.298900.280503.424202.68980HepG2ZC3H8
CLIP1ENSG00000130779.152672.106201695.432200.6562024.1556022.94160HepG2ZNF622
CLIP1ENSG00000130779.151617.202402717.42050-0.7487022.9988021.47560K562AGGF1
CLIP1ENSG00000130779.151591.887602827.57870-0.8288015.1325013.40060K562AKAP8L
CLIP1ENSG00000130779.152016.295802966.77200-0.5572011.327709.30160K562ATP5C1
CLIP1ENSG00000130779.151734.574501277.285500.441403.959002.91370K562BOP1
CLIP1ENSG00000130779.151683.186501358.102900.309502.690701.91710K562CPSF6
CLIP1ENSG00000130779.152554.239703042.80580-0.252503.059702.13210K562DKC1
CLIP1ENSG00000130779.151393.665201187.921900.230302.015301.38470K562EIF2S2
CLIP1ENSG00000130779.151176.37520788.968800.576204.804203.39390K562EIF3D
CLIP1ENSG00000130779.15769.34980952.53010-0.308102.339101.60420K562EIF3G
CLIP1ENSG00000130779.151485.04840886.638900.7440010.766809.12620K562EIF4A3
CLIP1ENSG00000130779.152270.416201381.872400.7162010.324908.61920K562FMR1
CLIP1ENSG00000130779.151732.281901171.276700.564505.242803.94130K562FTO
CLIP1ENSG00000130779.151124.69400922.068500.286502.621502.02920K562FXR1
CLIP1ENSG00000130779.151207.88340883.644200.450802.695401.99950K562G3BP2
CLIP1ENSG00000130779.151624.188701296.639700.324802.618501.84380K562GPKOW
CLIP1ENSG00000130779.151122.83160911.411600.300902.222301.67850K562HNRNPC
CLIP1ENSG00000130779.152505.031401866.891000.424104.120603.15580K562HSPD1
CLIP1ENSG00000130779.152182.620603000.83960-0.459304.356603.29150K562KIF1C
CLIP1ENSG00000130779.151816.009401107.206400.713704.967303.67290K562KRR1
CLIP1ENSG00000130779.15953.520601206.77300-0.339802.899301.95280K562MATR3
CLIP1ENSG00000130779.152392.943803361.68820-0.490407.623905.96480K562MBNL1
CLIP1ENSG00000130779.151593.618501265.671100.332302.893801.99700K562METAP2
CLIP1ENSG00000130779.151534.792002356.29370-0.618505.335203.97020K562NAA15
CLIP1ENSG00000130779.151146.76890885.351400.373203.508902.11210K562NCBP2
CLIP1ENSG00000130779.151317.473101943.24870-0.560702.258601.38110K562PABPN1
CLIP1ENSG00000130779.151130.850901562.99620-0.466904.614003.51630K562PPIG
CLIP1ENSG00000130779.151432.439601174.812100.285902.397101.77170K562PTBP1
CLIP1ENSG00000130779.153147.419902245.824200.486805.946804.75580K562PUF60
CLIP1ENSG00000130779.152894.926902388.713500.277202.951701.84560K562PUM1
CLIP1ENSG00000130779.151766.099002804.32910-0.667109.756208.78470K562PUS1
CLIP1ENSG00000130779.151380.435002732.27450-0.9850029.7767027.75160K562RBM15
CLIP1ENSG00000130779.151807.382901233.202900.551404.893103.57510K562SF3B1
CLIP1ENSG00000130779.151281.90550982.564900.383603.755602.23420K562SSB
CLIP1ENSG00000130779.151076.55510694.309300.632705.787804.28100K562SUPV3L1
CLIP1ENSG00000130779.151152.64430948.768100.280702.243801.50330K562SYNCRIP
CLIP1ENSG00000130779.151169.74800884.360200.403404.032903.06360K562U2AF2
CLIP1ENSG00000130779.15970.53600734.779500.401402.945701.88840K562UCHL5
CLIP1ENSG00000130779.152176.886701609.029400.436008.405507.23660K562UPF1
CLIP1ENSG00000130779.152046.039901700.375500.266902.061501.32820K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CLIP1 is not available on ENCORE database.





12 RBPs can affect the splicing of CLIP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECLIP1ENSG00000130779.15chr12-1228319211228320261228255271228262441228372721228373330.141000.000380.02842includedHepG2RBM22
SECLIP1ENSG00000130779.15chr12-1228319211228320261228255271228262441228372721228373330.288000.000000.00035includedHepG2QKI
SECLIP1ENSG00000130779.15chr12-1228319211228320261228255271228262441228372721228373330.250000.000420.02002includedK562FXR1
SECLIP1ENSG00000130779.15chr12-122821178122821295122819194122819252122825299122828591-0.164000.001250.02059excludedK562PUS1
SECLIP1ENSG00000130779.15chr12-1228319211228320261228255271228262441228372721228373330.442000.000000.00000includedHepG2PTBP1
SECLIP1ENSG00000130779.15chr12-1228319211228320261228255271228262441228372721228373330.144000.000560.01606includedHepG2SRSF1
SECLIP1ENSG00000130779.15chr12-1228319211228320261228255271228262441228372721228373330.173000.000000.00067includedHepG2SSB
SECLIP1ENSG00000130779.15chr12-122821178122821295122819194122819252122825299122828591-0.113000.000020.00327excludedK562HNRNPUL1
SECLIP1ENSG00000130779.15chr12-122821178122821295122819194122819252122825299122828591-0.201000.000090.00417excludedK562RBM15
SECLIP1ENSG00000130779.15chr12-122821178122821295122819194122819252122825299122828591-0.168000.003350.06913excludedK562AGGF1
SECLIP1ENSG00000130779.15chr12-122821178122821295122819194122819252122825299122828591-0.072000.000610.08896excludedK562NPM1
A3SSCLIP1ENSG00000130779.15chr12-1228191941228192751228191941228192521228211781228212950.146000.015120.07526longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CLIP1 is not avaliable on ENCORE database.