CCDC84

General Information

Gene Name       : CCDC84
Gene ID             : ENSG00000186166.8
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CCDC84)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCDC84ENSG00000186166.810.7813.2512.02ENCSR000AEF
HepG2CCDC84ENSG00000186166.813.0814.0613.57ENCSR985KAT
K562CCDC84ENSG00000186166.86.466.526.49ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC84 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC84 RNA is bound by 15 proteins.  







eCLIP assay for CCDC84 is not avaliable on ENCORE database.





15 proteins are bound to CCDC84 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11118886019118886073+3'-UTR,CDS4.007524.01763HepG2GRWD1
chr11118881875118881953+3'-UTR,CDS,intron-Proximal3.247433.98346HepG2SF3B4
chr11118885738118885784+3'-UTR,CDS4.377103.71570HepG2BCLAF1
chr11118882920118882960+3'-UTR,CDS3.635663.59112HepG2PPIG
chr11118881447118881491+3'-UTR,CDS,intron-Proximal3.611844.46864HepG2BCLAF1
chr11118881966118881996+3'-UTR,CDS,intron-Proximal5.090129.88154HepG2PPIG
chr11118881491118881542+3'-UTR,CDS,intron-Proximal3.204305.79905HepG2BCLAF1
chr11118881928118882020+3'-UTR,CDS,intron-Proximal3.000997.06582HepG2SRSF1
chr11118881434118881525+3'-UTR,CDS,intron-Proximal3.071428.32422HepG2U2AF2
chr11118886074118886150+3'-UTR,CDS,intron-Proximal3.994263.18535HepG2LSM11
chr11118882644118882705+3'-UTR,CDS,intron-Proximal3.051133.17233HepG2BCLAF1
chr11118882646118882718+3'-UTR,CDS,intron-Proximal3.676766.70384HepG2PPIG
chr11118882862118882967+3'-UTR,CDS,intron-Proximal4.461094.69071HepG2GRWD1
chr11118881929118881966+3'-UTR,CDS,intron-Proximal4.044228.34074HepG2PPIG
chr11118882826118882979+3'-UTR,CDS,intron-Proximal3.029953.55660K562BUD13
chr11118881928118881986+3'-UTR,CDS,intron-Proximal4.085133.12746HepG2GRWD1
chr11118886111118886147+3'-UTR,CDS4.384413.79199HepG2PPIG
chr11118868862118868936+5'-UTR,CDS4.195467.88206HepG2NCBP2
chr11118869291118869304+CDS,intron-Proximal3.515936.00907HepG2PPIG
chr11118869784118869837+CDS,intron-Proximal3.635667.09278HepG2PPIG
chr11118869776118869844+CDS,intron-Proximal4.223013.79347HepG2GRWD1
chr11118869227118869291+CDS4.199688.98325HepG2PPIG
chr11118869002118869028+CDS,intron-Proximal3.853715.24452HepG2PPIG
chr11118869792118869863+CDS,intron-Proximal3.073793.94654HepG2PRPF8
chr11118869796118869896+CDS,intron-Proximal3.800624.76554HepG2BCLAF1
chr11118869748118869872+CDS,intron-Proximal3.714995.13538HepG2SRSF1
chr11118869720118869740+CDS,intron-Proximal3.436954.24993HepG2PPIG
chr11118876661118876694+intron-Distal3.509416.71241HepG2ILF3
chr11118883259118883413+intron-Distal3.794804.09242HepG2QKI
chr11118881153118881254+intron-Distal3.430233.51696K562KHSRP
chr11118875308118875385+intron-Distal3.441604.53895HepG2ILF3
chr11118882563118882617+intron-Proximal4.296324.12401HepG2U2AF2
chr11118881423118881471+intron-Proximal5.252956.31252K562FMR1
chr11118869863118869912+intron-Proximal3.552193.27405HepG2PRPF8
chr11118882964118883050+intron-Proximal4.992115.65342K562AQR
chr11118882737118882796+intron-Proximal4.176913.85435K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC84 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC84 is not available on ENCORE database.

  • 114 RBPs can affect the levels of CCDC84.  








The Knockdown/knockout RNA-Seq assay for CCDC84 is not available on ENCORE database.





114 RBPs can affect the gene expression of CCDC84 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC84ENSG00000186166.4652.89570319.984901.0287015.5880014.39510HepG2ACO1
CCDC84ENSG00000186166.4331.15460142.585801.215608.089107.23100HepG2AKAP1
CCDC84ENSG00000186166.4421.79050302.309000.480402.470701.48470HepG2AKAP8
CCDC84ENSG00000186166.4445.96680321.580000.471702.522701.78650HepG2AKAP8L
CCDC84ENSG00000186166.4699.13460497.201100.491604.896604.02560HepG2AUH
CCDC84ENSG00000186166.4781.89180298.724901.3881015.2997012.95420HepG2BCCIP
CCDC84ENSG00000186166.4636.24010483.720600.395302.515801.94220HepG2BOP1
CCDC84ENSG00000186166.4832.29350501.068400.732009.290608.00000HepG2CALR
CCDC84ENSG00000186166.4738.58570542.671200.444602.322701.43720HepG2CCAR1
CCDC84ENSG00000186166.4515.31790320.025700.687206.191405.26860HepG2CKAP4
CCDC84ENSG00000186166.4469.98700222.184901.080807.159905.93270HepG2CNOT7
CCDC84ENSG00000186166.4269.41080376.09520-0.481302.736201.63630HepG2CPSF7
CCDC84ENSG00000186166.4482.49560623.46130-0.369803.333002.53260HepG2DAZAP1
CCDC84ENSG00000186166.4402.19470242.630600.729005.372004.45860HepG2DDX21
CCDC84ENSG00000186166.4284.55990136.567101.059006.628105.70190HepG2DDX3X
CCDC84ENSG00000186166.4664.59480293.659701.178209.932708.57650HepG2DDX55
CCDC84ENSG00000186166.4193.66630117.359600.722502.727102.11440HepG2DDX6
CCDC84ENSG00000186166.4370.47210204.254100.858906.186204.53060HepG2EFTUD2
CCDC84ENSG00000186166.4307.61480112.775301.4476011.9382010.76080HepG2EIF2S1
CCDC84ENSG00000186166.4360.78560124.608101.5336014.1729012.74990HepG2EIF4A3
CCDC84ENSG00000186166.4445.34580121.365301.8755014.2221012.73030HepG2EIF4B
CCDC84ENSG00000186166.4326.83620589.18970-0.850203.875202.92180HepG2EIF4G2
CCDC84ENSG00000186166.4854.62940570.909600.581907.300206.40260HepG2ETF1
CCDC84ENSG00000186166.4713.97570461.195300.630403.971603.06290HepG2FIP1L1
CCDC84ENSG00000186166.4235.21400103.922301.178407.907806.61420HepG2FUBP3
CCDC84ENSG00000186166.4518.98740315.639900.717304.297702.91980HepG2FUS
CCDC84ENSG00000186166.4372.52710125.790601.5662015.3669013.87600HepG2FXR1
CCDC84ENSG00000186166.4650.80250116.654402.4799044.1268041.63030HepG2G3BP1
CCDC84ENSG00000186166.4273.64600123.889101.143207.665506.16980HepG2G3BP2
CCDC84ENSG00000186166.4381.14910205.680900.889805.285203.74120HepG2GRSF1
CCDC84ENSG00000186166.4359.76080539.01740-0.583305.157804.21630HepG2HNRNPF
CCDC84ENSG00000186166.4363.29300118.204501.6197016.1926014.65010HepG2HNRNPK
CCDC84ENSG00000186166.4484.20590329.204400.556502.977701.69790HepG2HSPD1
CCDC84ENSG00000186166.4343.99070530.76910-0.625703.022602.26820HepG2IGF2BP1
CCDC84ENSG00000186166.4371.22400118.564201.6465016.9349015.43250HepG2IGF2BP2
CCDC84ENSG00000186166.4615.33840111.317302.4666017.4066015.21440HepG2IGF2BP3
CCDC84ENSG00000186166.4453.44060286.017000.664707.373506.23790HepG2ILF2
CCDC84ENSG00000186166.4328.30090216.607800.599802.594801.32520HepG2ILF3
CCDC84ENSG00000186166.4296.84890119.278501.315308.811406.93120HepG2KHSRP
CCDC84ENSG00000186166.4761.96570572.856000.411502.107601.39060HepG2LARP4
CCDC84ENSG00000186166.4329.97290231.991100.508202.537501.45240HepG2LARP7
CCDC84ENSG00000186166.4351.75570243.568200.530102.753401.54360HepG2LIN28B
CCDC84ENSG00000186166.4336.15910125.834801.4175012.1760010.83530HepG2MAGOH
CCDC84ENSG00000186166.4295.18700196.428600.587503.066001.37130HepG2MARK2
CCDC84ENSG00000186166.4523.05050126.528302.0474026.0609024.30210HepG2MATR3
CCDC84ENSG00000186166.4606.40100129.500002.2272034.4734032.44450HepG2NCBP2
CCDC84ENSG00000186166.4248.56940148.687200.741303.211101.48810HepG2PA2G4
CCDC84ENSG00000186166.4360.25310115.287901.6437014.1586012.56170HepG2PABPC4
CCDC84ENSG00000186166.4484.96920277.155400.807107.907706.59300HepG2PARN
CCDC84ENSG00000186166.4328.08240124.275001.400409.595608.57570HepG2PCBP1
CCDC84ENSG00000186166.4512.47000298.805600.778204.817103.47490HepG2PCBP2
CCDC84ENSG00000186166.4464.82900226.799101.035204.363703.37300HepG2PRPF8
CCDC84ENSG00000186166.4490.93100126.467001.9567011.6020010.63400HepG2PTBP1
CCDC84ENSG00000186166.4351.59540590.13800-0.747107.319606.40920HepG2PUF60
CCDC84ENSG00000186166.4353.27060625.99620-0.825409.694808.47860HepG2PUM2
CCDC84ENSG00000186166.4383.53080136.940201.4857017.5692016.19040HepG2QKI
CCDC84ENSG00000186166.4506.02070288.372600.811204.095503.24630HepG2RAVER1
CCDC84ENSG00000186166.4928.63750477.163100.9605017.1059016.04170HepG2RBM22
CCDC84ENSG00000186166.4355.71280124.292101.5169016.9993015.41810HepG2RBM25
CCDC84ENSG00000186166.4461.91300279.746100.723404.766403.44480HepG2RBM27
CCDC84ENSG00000186166.4607.23240140.735202.1092044.5750042.99700HepG2NELFE
CCDC84ENSG00000186166.4396.28270131.094601.5958021.8241020.37450HepG2RECQL
CCDC84ENSG00000186166.4462.67680193.536901.2573013.6768012.44280HepG2RPS19
CCDC84ENSG00000186166.4414.79000257.995700.684904.346003.35330HepG2RPS2
CCDC84ENSG00000186166.4383.65190263.362300.542602.767901.69430HepG2RPS5
CCDC84ENSG00000186166.4541.70360224.377201.271508.880707.57940HepG2RRP9
CCDC84ENSG00000186166.4343.54340194.240800.822505.612804.28680HepG2SERBP1
CCDC84ENSG00000186166.41057.96000466.828801.1802013.5097011.95330HepG2SF3A3
CCDC84ENSG00000186166.4567.02810131.646002.1067043.8124041.99960HepG2SF3B4
CCDC84ENSG00000186166.4268.80120565.83000-1.0738017.5229016.04140HepG2SLBP
CCDC84ENSG00000186166.4484.85760290.789600.737508.750007.70760HepG2SMN1
CCDC84ENSG00000186166.41190.38360538.917401.1432031.6287030.41610HepG2SRFBP1
CCDC84ENSG00000186166.4554.63210137.419102.0128039.7721038.43750HepG2SRSF1
CCDC84ENSG00000186166.4982.73950511.652300.941508.467606.63660HepG2SRSF3
CCDC84ENSG00000186166.4358.43510529.59810-0.563204.518403.66170HepG2SRSF7
CCDC84ENSG00000186166.4236.26690111.805601.079309.004008.11020HepG2SRSF9
CCDC84ENSG00000186166.4386.67320194.093300.994307.525105.64400HepG2STIP1
CCDC84ENSG00000186166.4581.85980123.543102.2356049.6624047.67350HepG2TAF15
CCDC84ENSG00000186166.4249.99900113.492301.139209.207607.70030HepG2TIA1
CCDC84ENSG00000186166.4511.21330272.069400.9099010.425709.56250HepG2TIAL1
CCDC84ENSG00000186166.4378.79730576.52370-0.606005.140903.91070HepG2TUFM
CCDC84ENSG00000186166.4389.42090172.788201.172205.271004.21690HepG2UCHL5
CCDC84ENSG00000186166.4519.64410267.960400.955405.731804.24730HepG2UPF2
CCDC84ENSG00000186166.4606.82190399.706900.602206.637305.77790HepG2UTP3
CCDC84ENSG00000186166.4364.31950199.849200.866205.357503.82800HepG2XPO5
CCDC84ENSG00000186166.4500.60750317.115800.658603.726402.49290HepG2XRCC6
CCDC84ENSG00000186166.4439.03760287.843600.609002.413901.73280HepG2XRN2
CCDC84ENSG00000186166.4710.29860399.272300.8310013.7063012.40070HepG2ZC3H8
CCDC84ENSG00000186166.4686.91600455.327400.593108.135007.32560HepG2ZNF622
CCDC84ENSG00000186166.4370.60950273.811500.436602.541301.99240K562AGGF1
CCDC84ENSG00000186166.4440.97080300.861100.551503.670002.49930K562AKAP8
CCDC84ENSG00000186166.4438.92550284.909200.623404.375403.54710K562AKAP8L
CCDC84ENSG00000186166.4519.31590321.281000.692704.642503.91730K562AQR
CCDC84ENSG00000186166.4412.99870298.930800.466203.066402.10420K562ATP5C1
CCDC84ENSG00000186166.4483.51720327.232700.563204.352402.83570K562CCDC124
CCDC84ENSG00000186166.4606.69760363.091000.740503.964602.64920K562CNOT7
CCDC84ENSG00000186166.4327.69180166.394700.977607.274805.73150K562EFTUD2
CCDC84ENSG00000186166.4332.53140190.904700.800505.115203.94690K562FMR1
CCDC84ENSG00000186166.4280.06030161.826400.791204.420203.24070K562FTO
CCDC84ENSG00000186166.4526.52930302.373900.800107.984006.39590K562KIF1C
CCDC84ENSG00000186166.4292.90600152.957300.937205.020703.71730K562KRR1
CCDC84ENSG00000186166.4161.00470228.11930-0.502702.345301.56810K562MAGOH
CCDC84ENSG00000186166.4396.47690289.434900.453902.551601.53340K562MAK16
CCDC84ENSG00000186166.4461.93110338.733200.447402.291401.47690K562MBNL1
CCDC84ENSG00000186166.4257.01060174.811300.555902.531701.69760K562METAP2
CCDC84ENSG00000186166.4422.47550237.426200.831304.971503.67670K562NAA15
CCDC84ENSG00000186166.4240.46200161.638600.572902.778001.35950K562NUSAP1
CCDC84ENSG00000186166.4518.62260348.823200.572102.780601.54270K562PABPC1
CCDC84ENSG00000186166.4334.69490202.985400.721403.828102.67680K562PCBP2
CCDC84ENSG00000186166.4423.04890255.912900.725104.628903.55420K562PCBP3
CCDC84ENSG00000186166.4259.49610160.307300.694803.547501.90140K562PHF6
CCDC84ENSG00000186166.4317.18050196.281400.692304.374703.36400K562POLR2G
CCDC84ENSG00000186166.4224.85780325.76420-0.534802.929202.08180K562PPIG
CCDC84ENSG00000186166.4221.44530147.236200.588702.492101.63920K562PSIP1
CCDC84ENSG00000186166.4156.50480221.62580-0.501902.314301.69980K562PTBP1
CCDC84ENSG00000186166.4577.33120282.580501.0306010.720809.69920K562PUS1
CCDC84ENSG00000186166.4442.60850275.308300.684905.750104.92170K562RBM15
CCDC84ENSG00000186166.4161.53060240.16460-0.572202.194601.31250K562RPS3
CCDC84ENSG00000186166.4466.63410312.106800.580204.906103.84660K562SF3A3
CCDC84ENSG00000186166.4310.36130170.373900.865105.020903.68800K562SF3B1
CCDC84ENSG00000186166.4293.30620193.036100.603403.683402.69240K562SF3B4
CCDC84ENSG00000186166.4223.11840141.622900.655702.898901.94070K562TIAL1
CCDC84ENSG00000186166.4265.80860185.869300.516002.635601.85080K562U2AF2
CCDC84ENSG00000186166.4246.11980165.931600.568702.530501.56260K562UCHL5
CCDC84ENSG00000186166.4387.56460286.974200.433402.480101.64950K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC84 is not available on ENCORE database.





8 RBPs can affect the splicing of CCDC84 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCDC84ENSG00000186166.4chr11+1188723221188725351188697201188698191188814731188815400.498000.003560.09527includedK562PRPF8
SECCDC84ENSG00000186166.4chr11+118883941118883972118882858118882964118885703118885793-0.188000.006410.09185excludedHepG2U2AF1
SECCDC84ENSG00000186166.4chr11+118883941118883972118882858118882964118885703118885793-0.434000.000170.00315excludedHepG2U2AF2
SECCDC84ENSG00000186166.4chr11+1188723221188725351188697201188698191188814731188815400.551000.002060.08582includedK562EFTUD2
SECCDC84ENSG00000186166.4chr11+1188839411188839721188828581188829641188857031188857930.188000.004060.07557includedHepG2SRSF1
SECCDC84ENSG00000186166.4chr11+118883941118883972118882858118882964118885703118885793-0.344000.003430.05380excludedK562U2AF2
A5SSCCDC84ENSG00000186166.4chr11+118881930118882021118881930118881993118882648118882713-0.400000.000450.03751shorterHepG2SF3A3
A5SSCCDC84ENSG00000186166.4chr11+1188697201188698761188697201188698191188814731188815400.479000.000350.04593longerHepG2FTO
RICCDC84ENSG00000186166.4chr11+1188826481188829641188826481188827131188828581188829640.341000.000000.00003includedHepG2SF3A3
RICCDC84ENSG00000186166.4chr11+1188826481188829641188826481188827131188828581188829640.244000.006710.06686includedHepG2PRPF8
RICCDC84ENSG00000186166.4chr11+1188826481188829641188826481188827131188828581188829640.355000.001260.01497includedK562EFTUD2
RICCDC84ENSG00000186166.4chr11+1188826481188829641188826481188827131188828581188829640.289000.000020.00017includedK562AQR
MXECCDC84ENSG00000186166.4chr11+118882858118882964118883941118883972118882648118882713118885703118885793-0.268000.016720.095482includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCDC84 is not avaliable on ENCORE database.