C6orf136

General Information

Gene Name       : C6orf136
Gene ID             : ENSG00000204564.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C6orf136)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C6orf136ENSG00000204564.119.1812.3010.74ENCSR000AEF
HepG2C6orf136ENSG00000204564.1115.9315.7315.83ENCSR985KAT
K562C6orf136ENSG00000204564.1136.3636.7136.53ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C6orf136 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C6orf136 RNA is bound by 15 proteins.  







eCLIP assay for C6orf136 is not avaliable on ENCORE database.





15 proteins are bound to C6orf136 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr63062079130620865+3'-UTR5.4332670.35766K562PUM2
chr63062079030620844+3'-UTR4.850195.13875K562DDX6
chr63061874930618802+3'-UTR,CDS,intron-Distal,intron-Proximal3.245664.35314HepG2U2AF2
chr63061910830619177+3'-UTR,CDS4.276473.60441HepG2GRWD1
chr63061911630619192+3'-UTR,CDS4.4071310.12748K562IGF2BP2
chr63062060030620653+3'-UTR,CDS3.898693.86355HepG2PPIG
chr63061899130619057+3'-UTR,CDS,intron-Proximal3.462506.26686K562SF3B4
chr63061902930619076+3'-UTR,CDS,intron-Proximal5.1864914.10147HepG2U2AF2
chr63061903130619084+3'-UTR,CDS,intron-Proximal4.4228220.18445K562U2AF2
chr63061903030619092+3'-UTR,CDS,intron-Proximal5.8436612.55150K562U2AF1
chr63062051930620584+3'-UTR,CDS,intron-Proximal3.965976.86590K562SF3B4
chr63061885730618902+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.752466.26248HepG2PRPF8
chr63061491630614970+5'-UTR4.450865.44652K562IGF2BP2
chr63061740830617512+CDS,intron-Distal,intron-Proximal3.980219.84989HepG2PCBP2
chr63061740330617497+CDS,intron-Distal,intron-Proximal3.8620711.58912K562IGF2BP2
chr63061732230617381+CDS,intron-Distal,intron-Proximal4.863375.07478HepG2U2AF2
chr63061758930617640+CDS,intron-Distal3.579154.80505K562PCBP1
chr63061761030617709+CDS,intron-Distal4.890167.95752K562HNRNPK
chr63061520930615294+CDS,intron-Distal,intron-Proximal3.355623.77385HepG2NCBP2
chr63061511630615195+CDS,intron-Distal,intron-Proximal4.5190510.43503HepG2EFTUD2
chr63061762930617695+CDS,intron-Distal3.674475.50031HepG2DDX59
chr63061739630617456+CDS,intron-Distal,intron-Proximal4.946667.59520K562PCBP1
chr63061512030615269+CDS,intron-Distal,intron-Proximal4.5898121.89299K562EFTUD2
chr63061741330617508+CDS,intron-Distal,intron-Proximal3.112626.35803HepG2HNRNPK
chr63061739430617522+CDS,intron-Distal,intron-Proximal3.441108.17355K562HNRNPK
chr63061567530615713+intron-Distal,intron-Proximal3.405173.54718K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C6orf136 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C6orf136 is not available on ENCORE database.

  • 73 RBPs can affect the levels of C6orf136.  








The Knockdown/knockout RNA-Seq assay for C6orf136 is not available on ENCORE database.





73 RBPs can affect the gene expression of C6orf136 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C6orf136ENSG00000204564.7700.27200515.783500.441002.972201.51650HepG2ATP5C1
C6orf136ENSG00000204564.7779.47210386.832401.010709.731408.69580HepG2BOP1
C6orf136ENSG00000204564.7703.76630470.718300.580105.006003.54390HepG2CPSF7
C6orf136ENSG00000204564.7166.96540249.26080-0.578102.674602.00640HepG2DDX21
C6orf136ENSG00000204564.7528.25130389.162200.440802.307901.73130HepG2DDX3X
C6orf136ENSG00000204564.7463.15780334.411000.469802.228401.66840HepG2DDX6
C6orf136ENSG00000204564.7407.46830211.857800.9435010.174308.89500HepG2DNAJC21
C6orf136ENSG00000204564.7316.28970210.018700.590604.529003.73010HepG2DNAJC2
C6orf136ENSG00000204564.7446.19400332.417100.424602.042901.46830HepG2G3BP1
C6orf136ENSG00000204564.7622.11140384.162000.695405.588304.72630HepG2HNRNPLL
C6orf136ENSG00000204564.7464.86950348.170300.416902.447501.76460HepG2IGF2BP1
C6orf136ENSG00000204564.7452.69860328.532200.462402.426201.74640HepG2PABPC4
C6orf136ENSG00000204564.7245.07810164.758500.572802.834901.58850HepG2PKM
C6orf136ENSG00000204564.7277.25320210.801200.395201.945301.31870HepG2PPIL4
C6orf136ENSG00000204564.7533.86360377.146300.501205.249104.48560HepG2PUM1
C6orf136ENSG00000204564.7329.50330125.710001.390104.166001.86610HepG2RBM17
C6orf136ENSG00000204564.7299.09600404.46700-0.435402.523702.00350HepG2NELFE
C6orf136ENSG00000204564.7286.86120376.73640-0.393202.150701.59810HepG2RECQL
C6orf136ENSG00000204564.7269.89710401.69160-0.573702.462001.70620HepG2RPS3A
C6orf136ENSG00000204564.7343.15630210.471600.705105.964905.07460HepG2SAFB2
C6orf136ENSG00000204564.7299.62640194.551700.622903.111402.11140HepG2SERBP1
C6orf136ENSG00000204564.7553.48620380.235800.541603.699702.89440HepG2SF3B1
C6orf136ENSG00000204564.7268.46910117.877101.187402.967801.45420HepG2SFPQ
C6orf136ENSG00000204564.7378.32040108.561301.801007.418605.06430HepG2SNRNP200
C6orf136ENSG00000204564.7578.67310466.435600.311001.997801.55120HepG2SRFBP1
C6orf136ENSG00000204564.7272.62810394.94180-0.534703.585503.06400HepG2SRSF1
C6orf136ENSG00000204564.7755.48190409.159800.884607.375505.67680HepG2SRSF3
C6orf136ENSG00000204564.7416.47320321.318900.374102.558802.02310HepG2SRSF9
C6orf136ENSG00000204564.7259.85230355.03000-0.450202.419401.88950HepG2TAF15
C6orf136ENSG00000204564.7297.94460229.616300.375701.806201.38440HepG2TIAL1
C6orf136ENSG00000204564.7327.69750231.711200.499903.413302.80140HepG2TRIM56
C6orf136ENSG00000204564.7331.56850126.243801.393003.277302.20190HepG2U2AF2
C6orf136ENSG00000204564.7201.11000119.635000.749203.026202.23450HepG2UCHL5
C6orf136ENSG00000204564.7608.44450441.048200.464104.917204.24100HepG2ZNF622
C6orf136ENSG00000204564.72129.405101202.370600.8245024.7519023.16470K562AGGF1
C6orf136ENSG00000204564.72081.349901251.125000.7342011.7726010.29930K562AKAP8L
C6orf136ENSG00000204564.71310.783701048.019200.322702.347001.80020K562AQR
C6orf136ENSG00000204564.71035.393001408.79560-0.444306.788905.83300K562DDX47
C6orf136ENSG00000204564.71795.878001346.275300.415606.144404.76000K562DKC1
C6orf136ENSG00000204564.7802.54710627.669300.354502.522101.73950K562EIF4A3
C6orf136ENSG00000204564.7702.90150547.900800.359302.767601.47820K562EWSR1
C6orf136ENSG00000204564.7646.95620475.406900.444403.284301.69420K562G3BP1
C6orf136ENSG00000204564.7175.90770386.95270-1.137304.386003.45140K562G3BP2
C6orf136ENSG00000204564.7757.34340987.02560-0.382102.907302.09330K562GPKOW
C6orf136ENSG00000204564.7853.26930635.133700.425803.409202.75700K562HNRNPC
C6orf136ENSG00000204564.7804.46190567.218100.504004.398902.91840K562HNRNPF
C6orf136ENSG00000204564.7845.83980497.553200.765406.648104.77240K562IGF2BP2
C6orf136ENSG00000204564.7875.49790615.173000.509004.567102.71430K562LARP7
C6orf136ENSG00000204564.7911.21230644.261400.500004.014102.17650K562LIN28B
C6orf136ENSG00000204564.7808.94790566.437600.514004.581102.54880K562LSM11
C6orf136ENSG00000204564.71610.525401270.987500.341502.725401.66000K562MAK16
C6orf136ENSG00000204564.72016.173501487.408900.438704.999603.70580K562MBNL1
C6orf136ENSG00000204564.7923.938301082.46360-0.228502.075801.37000K562MTPAP
C6orf136ENSG00000204564.71707.078601042.567100.711306.382504.83290K562NAA15
C6orf136ENSG00000204564.7980.34220625.415800.648405.654203.34040K562NUSAP1
C6orf136ENSG00000204564.71425.61330646.520701.140703.923202.68910K562PABPN1
C6orf136ENSG00000204564.7731.02490510.976100.516604.864903.02940K562PCBP1
C6orf136ENSG00000204564.7702.886301174.52370-0.740703.125502.24070K562PCBP3
C6orf136ENSG00000204564.71050.93980620.120700.761009.875507.12540K562PHF6
C6orf136ENSG00000204564.7557.00830900.82650-0.693603.161602.30090K562POLR2G
C6orf136ENSG00000204564.71608.41200768.130601.066102.814301.36030K562PPP1R8
C6orf136ENSG00000204564.71103.32180569.475800.954008.040706.33150K562PSIP1
C6orf136ENSG00000204564.71094.704101409.55360-0.364702.975302.12790K562PUF60
C6orf136ENSG00000204564.72586.283201240.744601.0596010.775409.75140K562PUS1
C6orf136ENSG00000204564.71949.859201208.942000.6895012.1223010.88360K562RBM15
C6orf136ENSG00000204564.7947.71370519.630400.8669012.9946010.84160K562RCC2
C6orf136ENSG00000204564.7293.21760533.89490-0.864604.272203.25410K562RPS19
C6orf136ENSG00000204564.71625.16110679.147401.258704.761103.01250K562SNRNP200
C6orf136ENSG00000204564.7779.11030492.589800.661306.477504.72100K562SRFBP1
C6orf136ENSG00000204564.7712.48140497.795800.517204.524003.62360K562SRSF1
C6orf136ENSG00000204564.7841.56760615.704600.450703.593602.37180K562SRSF4
C6orf136ENSG00000204564.7640.63780470.221800.446103.112301.98770K562SRSF5
C6orf136ENSG00000204564.7841.03880547.733500.618605.179703.85790K562TIAL1
C6orf136ENSG00000204564.7672.42890477.018000.495203.707502.41480K562TRA2A
C6orf136ENSG00000204564.7927.37570581.960200.672107.393805.68340K562TRIM56
C6orf136ENSG00000204564.7985.661301275.29320-0.371704.744303.82950K562UPF1
C6orf136ENSG00000204564.71097.082001466.29720-0.418503.366702.03700K562UTP3
C6orf136ENSG00000204564.7848.397401134.72780-0.419506.032204.83300K562WDR43
C6orf136ENSG00000204564.7935.005801180.46670-0.336302.520101.70400K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C6orf136 is not available on ENCORE database.





28 RBPs can affect the splicing of C6orf136 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC6orf136ENSG00000204564.7chr6+306153823061562330614962306150803061733430617690-0.093000.000040.00136excludedHepG2U2AF1
SEC6orf136ENSG00000204564.7chr6+306187703061885930614940306150803061904230619243-0.080000.000010.00074excludedK562AKAP8L
SEC6orf136ENSG00000204564.7chr6+3061538230615623306149623061508030617334306176900.122000.001510.09885includedHepG2TBRG4
SEC6orf136ENSG00000204564.7chr6+306187703061885930617334306177363061904230619243-0.053000.000370.00520excludedK562AQR
SEC6orf136ENSG00000204564.7chr6+306173343061773630614831306150803061877030618908-0.069000.000000.00001excludedK562PUS1
SEC6orf136ENSG00000204564.7chr6+306187703061885930614940306150803061904230619243-0.071000.000050.00312excludedK562UTP18
SEC6orf136ENSG00000204564.7chr6+306173343061773630614831306150803061877030618859-0.098000.000070.00448excludedK562HNRNPU
SEC6orf136ENSG00000204564.7chr6+306173343061773630614831306150803061877030618859-0.052000.000020.00133excludedK562RBM15
SEC6orf136ENSG00000204564.7chr6+306173343061773630614831306150803061904230619243-0.063000.001090.02969excludedK562AGGF1
SEC6orf136ENSG00000204564.7chr6+306153823061562330614962306150803061733430617690-0.303000.000400.01886excludedHepG2HNRNPC
SEC6orf136ENSG00000204564.7chr6+306153823061562330614962306150803061733430617690-0.071000.000130.00337excludedK562HNRNPC
A3SSC6orf136ENSG00000204564.7chr6+3062040230620494306204243062049430619042306192430.122000.000000.00000longerK562AQR
A5SSC6orf136ENSG00000204564.7chr6+3061877030618877306187703061885930619042306192430.076000.000460.04925longerK562U2AF1
A5SSC6orf136ENSG00000204564.7chr6+3061877030618908306187703061885930619042306192430.068000.000000.00000longerK562PUS1
A5SSC6orf136ENSG00000204564.7chr6+3061877030618877306187703061885930619042306192430.331000.000000.00000longerK562AQR
A5SSC6orf136ENSG00000204564.7chr6+3061877030618877306187703061885930619042306192430.053000.000780.05863longerK562HNRNPC
A5SSC6orf136ENSG00000204564.7chr6+3061877030618877306187703061885930619042306192430.130000.001150.07399longerHepG2SF3A3
A5SSC6orf136ENSG00000204564.7chr6+3061877030618877306187703061885930619042306192430.173000.000030.02323longerHepG2SSB
A5SSC6orf136ENSG00000204564.7chr6+3061877030618877306187703061885930619042306192430.158000.000000.00000longerK562U2AF2
A5SSC6orf136ENSG00000204564.7chr6+3061877030618877306187703061885930619042306192430.120000.000000.00076longerK562SF3B4
A5SSC6orf136ENSG00000204564.7chr6+3061877030618877306187703061885930619042306192430.103000.000080.01081longerHepG2U2AF1
RIC6orf136ENSG00000204564.7chr6+3062042430620886306204243062049430620578306208860.233000.001840.04287includedHepG2UCHL5
RIC6orf136ENSG00000204564.7chr6+3062042430620886306204243062049430620578306208860.137000.000680.02784includedHepG2TIA1
RIC6orf136ENSG00000204564.7chr6+3062042430620886306204243062049430620578306208860.097000.006740.06939includedHepG2PCBP1
RIC6orf136ENSG00000204564.7chr6+3062042430620886306204243062049430620578306208860.128000.001420.03345includedHepG2SRSF1
RIC6orf136ENSG00000204564.7chr6+3062042430620886306204243062049430620578306208860.090000.011160.09291includedHepG2QKI
RIC6orf136ENSG00000204564.7chr6+3062042430620886306204243062049430620578306208860.223000.000000.00000includedK562RBM22
RIC6orf136ENSG00000204564.7chr6+3062042430620886306204243062049430620578306208860.101000.005550.04801includedHepG2TAF15
RIC6orf136ENSG00000204564.7chr6+3062042430620886306204243062049430620578306208860.166000.000790.02022includedHepG2KHSRP
RIC6orf136ENSG00000204564.7chr6+3062042430620886306204243062049430620578306208860.211000.001610.01824includedHepG2RBM22
RIC6orf136ENSG00000204564.7chr6+3062042430620886306204243062049430620578306208860.124000.001500.02565includedHepG2SRSF9
RIC6orf136ENSG00000204564.7chr6+3062042430620886306204243062049430620578306208860.158000.000910.01233includedHepG2HNRNPK
RIC6orf136ENSG00000204564.7chr6+3062042430620886306204243062049430620578306208860.125000.001280.03006includedHepG2PTBP1
RIC6orf136ENSG00000204564.7chr6+3062042430620886306204243062049430620578306208860.220000.000510.02448includedHepG2XRN2
MXEC6orf136ENSG00000204564.7chr6+3061733430617736306190423061924330615197306156233062042430620494-0.099000.002850.052522includedHepG2SRSF1
MXEC6orf136ENSG00000204564.7chr6+30617334306177363061904230619243306151973061562330620424306204940.111000.000240.060471includedK562UPF1
MXEC6orf136ENSG00000204564.7chr6+30618770306188593061904230619243306176913061773630620424306204940.136000.000760.029091includedK562DDX55

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C6orf136 is not avaliable on ENCORE database.