C2orf43

General Information

Gene Name       : C2orf43
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C2orf43)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C2orf43 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C2orf43 RNA is bound by 19 proteins.  







eCLIP assay for C2orf43 is not avaliable on ENCORE database.





19 proteins are bound to C2orf43 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr22088661920886687-3'-UTR,CDS,intron-Distal,intron-Proximal4.459017.87748K562PUM2
chr22088599120886048-3'-UTR,intron-Distal4.310633.87930K562UPF1
chr22090137120901415-3'-UTR,CDS,intron-Distal,intron-Proximal3.469145.15500HepG2BCLAF1
chr22100110821001226-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.222446.19788K562DDX3X
chr22088538320885496-3'-UTR,CDS,intron-Distal,intron-Proximal3.553744.81657K562IGF2BP1
chr22097463220974741-5'-UTR,CDS,intron-Distal,intron-Proximal4.301784.50960HepG2GRWD1
chr22102279721022856-5'-UTR,intron-Distal,intron-Proximal3.210774.32211K562DDX3X
chr22097468520974740-5'-UTR,CDS,intron-Distal,intron-Proximal3.998595.79432HepG2BCLAF1
chr22102279021022848-5'-UTR,intron-Distal,intron-Proximal4.042896.88952HepG2NCBP2
chr22093972820939757-CDS,intron-Distal,intron-Proximal4.372824.04372HepG2BCLAF1
chr22093981120939946-CDS,intron-Distal,intron-Proximal4.498585.64683K562YBX3
chr22100110821001187-CDS,intron-Distal4.054084.01763HepG2GRWD1
chr22097451820974600-CDS,intron-Distal,intron-Proximal4.257137.02084HepG2PRPF8
chr22095817520958264-intron-Distal3.796805.09669HepG2QKI
chr22091952120919591-intron-Distal3.846023.54208HepG2SUGP2
chr22093267120932768-intron-Distal3.749723.22483K562SAFB2
chr22097337520973512-intron-Distal3.945313.71397K562KHSRP
chr22099710920997154-intron-Distal4.350893.60235HepG2HNRNPM
chr22092299620923074-intron-Distal3.808048.94372HepG2QKI
chr22094315520943217-intron-Distal3.609673.10466K562SAFB2
chr22102163121021739-intron-Distal4.0135514.01484HepG2CSTF2
chr22095835820958434-intron-Distal4.223354.03269HepG2PTBP1
chr22091976020919864-intron-Distal4.309763.51329HepG2MATR3
chr22100646821006550-intron-Distal3.152053.30286HepG2PTBP1
chr22090589720905982-intron-Distal3.442834.23286HepG2QKI
chr22095486920954956-intron-Distal3.452237.54631HepG2HNRNPL
chr22101178121011876-intron-Distal5.4263210.85098HepG2QKI
chr22101642121016483-intron-Distal3.059523.23296HepG2SUGP2
chr22091900320919059-intron-Distal4.064763.30687K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C2orf43 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C2orf43 is not available on ENCORE database.

  • 97 RBPs can affect the levels of C2orf43.  








The Knockdown/knockout RNA-Seq assay for C2orf43 is not available on ENCORE database.





97 RBPs can affect the gene expression of C2orf43 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C2orf43ENSG00000118961.101679.146101333.739900.332201.947201.49180HepG2AKAP1
C2orf43ENSG00000118961.10883.73050736.893200.262102.427401.79630HepG2CKAP4
C2orf43ENSG00000118961.101247.13600727.060300.778405.468004.38930HepG2CNOT7
C2orf43ENSG00000118961.10555.39090429.243400.371601.939301.35250HepG2CPSF6
C2orf43ENSG00000118961.10863.384901107.41420-0.359104.469803.56410HepG2DAZAP1
C2orf43ENSG00000118961.10497.37950681.70530-0.454805.204104.10770HepG2DDX19B
C2orf43ENSG00000118961.10488.56110648.12400-0.407702.751302.07430HepG2DDX21
C2orf43ENSG00000118961.10442.95690759.68560-0.778206.162805.06340HepG2DDX55
C2orf43ENSG00000118961.10450.11490751.54890-0.7396010.198008.91740HepG2DNAJC21
C2orf43ENSG00000118961.10529.10890744.86600-0.493406.506105.56540HepG2DNAJC2
C2orf43ENSG00000118961.10728.785201055.10410-0.533804.282103.55340HepG2EIF2S1
C2orf43ENSG00000118961.10316.64340540.34710-0.771005.638104.37800HepG2EIF3D
C2orf43ENSG00000118961.10422.526801166.07330-1.4645023.1048021.29740HepG2EIF4A3
C2orf43ENSG00000118961.10275.18200720.23990-1.3881024.2791022.05600HepG2EWSR1
C2orf43ENSG00000118961.10360.61810760.13940-1.0758010.452409.09080HepG2FIP1L1
C2orf43ENSG00000118961.10810.461501176.33970-0.537504.580603.70610HepG2FXR1
C2orf43ENSG00000118961.10480.50210758.74850-0.659106.522205.59100HepG2HNRNPA1
C2orf43ENSG00000118961.10645.894801017.78570-0.6561010.164408.58360HepG2HNRNPA2B1
C2orf43ENSG00000118961.10338.74680600.43000-0.825806.372904.16230HepG2HNRNPAB
C2orf43ENSG00000118961.10421.13440843.95200-1.0029013.3352011.91840HepG2HNRNPC
C2orf43ENSG00000118961.10585.811501104.84200-0.9153012.2164010.85150HepG2HNRNPK
C2orf43ENSG00000118961.10635.090901008.74420-0.667509.411208.23940HepG2HNRNPL
C2orf43ENSG00000118961.10667.01360838.37340-0.329903.163602.51890HepG2HNRNPU
C2orf43ENSG00000118961.10685.68030856.37330-0.320703.362802.56100HepG2ILF2
C2orf43ENSG00000118961.10495.29090692.86210-0.484302.812901.61110HepG2KHDRBS1
C2orf43ENSG00000118961.10689.080001115.74210-0.695305.342403.90620HepG2KHSRP
C2orf43ENSG00000118961.10795.409301093.71700-0.459502.702201.88260HepG2LARP4
C2orf43ENSG00000118961.10868.356601176.74960-0.438403.122802.42650HepG2MAGOH
C2orf43ENSG00000118961.10631.241301183.36490-0.906609.962508.82310HepG2MATR3
C2orf43ENSG00000118961.10484.36400615.29650-0.345202.031401.33350HepG2MSI2
C2orf43ENSG00000118961.10719.544401211.26350-0.751407.664906.63590HepG2NCBP2
C2orf43ENSG00000118961.10861.622201098.11410-0.349903.144202.33290HepG2NOL12
C2orf43ENSG00000118961.10457.33180664.55710-0.539202.387501.57460HepG2PABPC1
C2orf43ENSG00000118961.10707.586901078.81810-0.608505.361904.36760HepG2PABPC4
C2orf43ENSG00000118961.10558.31780829.86540-0.571807.485806.20240HepG2PARN
C2orf43ENSG00000118961.10757.488201120.65930-0.565105.158704.37110HepG2PCBP1
C2orf43ENSG00000118961.10313.42060446.84770-0.511702.791201.55620HepG2PKM
C2orf43ENSG00000118961.10547.51580747.76480-0.449702.371701.68440HepG2PPIL4
C2orf43ENSG00000118961.10788.459201140.22500-0.532204.509403.84820HepG2PTBP1
C2orf43ENSG00000118961.10769.213001048.26920-0.446603.907503.21240HepG2PUF60
C2orf43ENSG00000118961.10918.251101112.81120-0.277201.806601.30480HepG2PUM1
C2orf43ENSG00000118961.10632.263001111.98150-0.8145012.8828011.49910HepG2PUM2
C2orf43ENSG00000118961.10884.364001235.07880-0.481904.125303.38340HepG2QKI
C2orf43ENSG00000118961.10762.800701067.27070-0.484506.058305.36530HepG2RBM22
C2orf43ENSG00000118961.10605.06900858.34190-0.504503.542802.41290HepG2RBM27
C2orf43ENSG00000118961.10982.994101269.03390-0.368502.730002.19160HepG2NELFE
C2orf43ENSG00000118961.10866.630301181.80040-0.447503.981503.25940HepG2RECQL
C2orf43ENSG00000118961.10565.71740750.92760-0.408602.317401.68340HepG2RPLP0
C2orf43ENSG00000118961.10294.94710525.75200-0.833908.088307.10170HepG2RPS19
C2orf43ENSG00000118961.10548.81840746.61770-0.444004.965404.14520HepG2SAFB2
C2orf43ENSG00000118961.10365.20460527.72070-0.531103.317602.28400HepG2SERBP1
C2orf43ENSG00000118961.10604.20490459.616500.394502.325601.67590HepG2SF3B1
C2orf43ENSG00000118961.10927.362501187.27870-0.356502.681302.09800HepG2SF3B4
C2orf43ENSG00000118961.10836.878001005.18240-0.264402.440001.77540HepG2SLBP
C2orf43ENSG00000118961.10575.47380870.69770-0.597409.868608.77280HepG2SMN1
C2orf43ENSG00000118961.101863.022901239.197700.588106.438205.79020HepG2SRSF1
C2orf43ENSG00000118961.10355.19460494.55050-0.477502.236601.34890HepG2SRSF3
C2orf43ENSG00000118961.10271.969101008.09810-1.8901026.9034025.51640HepG2SRSF9
C2orf43ENSG00000118961.101315.531701046.580600.329903.959503.37020HepG2SSB
C2orf43ENSG00000118961.10955.917401177.10420-0.300303.237002.57480HepG2SUCLG1
C2orf43ENSG00000118961.10300.37410513.35920-0.773207.225505.75880HepG2SUPT6H
C2orf43ENSG00000118961.10538.38980756.27210-0.490302.811802.13010HepG2SUPV3L1
C2orf43ENSG00000118961.10563.035601113.66120-0.9840011.6832010.65520HepG2TAF15
C2orf43ENSG00000118961.10321.42670452.60220-0.493802.871202.13390HepG2TARDBP
C2orf43ENSG00000118961.10702.784901023.49180-0.542304.877603.77920HepG2TIA1
C2orf43ENSG00000118961.10555.71660814.69430-0.551904.491403.88620HepG2TIAL1
C2orf43ENSG00000118961.10498.31840821.91490-0.7219011.9259010.87330HepG2TRIM56
C2orf43ENSG00000118961.10785.557301024.15890-0.382703.066402.14110HepG2TUFM
C2orf43ENSG00000118961.10749.276501084.08520-0.532903.915602.91100HepG2UBE2L3
C2orf43ENSG00000118961.10264.91680446.76470-0.754005.555104.47200HepG2UCHL5
C2orf43ENSG00000118961.10649.13100812.01820-0.323003.335602.75150HepG2ZNF622
C2orf43ENSG00000118961.10720.135401102.39880-0.614309.896808.90760K562AGGF1
C2orf43ENSG00000118961.10739.680501147.07910-0.633007.408806.29630K562AKAP8L
C2orf43ENSG00000118961.101086.629301839.19280-0.7592011.4328010.35880K562AQR
C2orf43ENSG00000118961.10893.066001100.85210-0.301803.255502.21230K562BCLAF1
C2orf43ENSG00000118961.10505.40590760.71170-0.589904.822903.65980K562BOP1
C2orf43ENSG00000118961.10330.30080476.82540-0.529703.379302.18980K562CCAR1
C2orf43ENSG00000118961.10523.38800808.83860-0.628006.679905.45340K562CPSF6
C2orf43ENSG00000118961.10640.21610835.16060-0.383503.265602.10410K562CSTF2
C2orf43ENSG00000118961.10585.51950849.98140-0.537705.389203.86870K562DDX3X
C2orf43ENSG00000118961.10959.348201235.55540-0.365004.089903.24130K562EIF2S2
C2orf43ENSG00000118961.10624.00370888.01520-0.509004.606203.54730K562EIF4A3
C2orf43ENSG00000118961.101795.399102186.91480-0.284603.050802.06620K562EIF4G2
C2orf43ENSG00000118961.10732.995301042.60520-0.508304.622903.50580K562FIP1L1
C2orf43ENSG00000118961.10567.94600823.00550-0.535104.413203.33140K562FMR1
C2orf43ENSG00000118961.10775.81600990.12420-0.351903.262602.02110K562GLRX3
C2orf43ENSG00000118961.10574.12880772.22880-0.427703.144302.29990K562GPKOW
C2orf43ENSG00000118961.10725.353501061.36840-0.549203.012701.37380K562HNRNPAB
C2orf43ENSG00000118961.10387.47030899.21050-1.2146020.6612019.10570K562HNRNPC
C2orf43ENSG00000118961.10990.735701293.49200-0.384703.550102.33380K562HNRNPL
C2orf43ENSG00000118961.10827.196201189.90820-0.524503.789502.51760K562IGF2BP2
C2orf43ENSG00000118961.10462.70720659.42120-0.511102.787701.85090K562KRR1
C2orf43ENSG00000118961.10759.506001248.10460-0.7166010.579208.65960K562MATR3
C2orf43ENSG00000118961.10558.31810753.78700-0.433103.373302.40310K562METAP2
C2orf43ENSG00000118961.101780.232902331.05540-0.388903.385002.13450K562MSI2
C2orf43ENSG00000118961.10607.16750886.74410-0.546405.837204.06920K562NCBP2
C2orf43ENSG00000118961.10705.90980897.62180-0.346602.054101.40390K562PRPF8
C2orf43ENSG00000118961.10966.029001215.05840-0.330902.866902.19260K562PTBP1
C2orf43ENSG00000118961.101812.795702386.10670-0.396403.297502.40750K562PUF60
C2orf43ENSG00000118961.102010.479402486.74150-0.306703.664902.55970K562PUM2
C2orf43ENSG00000118961.10726.180001137.70860-0.647706.960406.14440K562PUS1
C2orf43ENSG00000118961.10804.462201165.14100-0.534405.449304.22330K562RBM22
C2orf43ENSG00000118961.10652.08670890.55180-0.449603.998702.35440K562RBM25
C2orf43ENSG00000118961.10500.07450734.46430-0.554503.767502.62430K562SF3B1
C2orf43ENSG00000118961.10759.25710976.20180-0.362603.150102.23710K562SF3B4
C2orf43ENSG00000118961.10880.839201169.31050-0.408705.672804.39410K562SRPK2
C2orf43ENSG00000118961.10824.088401124.93140-0.449003.898002.61490K562SRSF5
C2orf43ENSG00000118961.10685.60050852.52320-0.314402.820301.52870K562SSB
C2orf43ENSG00000118961.10596.69040869.19700-0.542703.154202.06840K562SUPV3L1
C2orf43ENSG00000118961.10933.523101205.54460-0.368902.699701.99990K562TARDBP
C2orf43ENSG00000118961.10887.470101162.87870-0.389903.629602.67230K562TIA1
C2orf43ENSG00000118961.10537.79260775.45690-0.528003.794202.69290K562TIAL1
C2orf43ENSG00000118961.10821.709501141.08260-0.473704.268102.86310K562TRA2A
C2orf43ENSG00000118961.101072.856301276.29370-0.250502.679201.43130K562TROVE2
C2orf43ENSG00000118961.10637.03970919.88540-0.530104.249702.96050K562UCHL5
C2orf43ENSG00000118961.10745.180501226.37510-0.7187014.9628013.44880K562UPF1
C2orf43ENSG00000118961.10753.038801049.36650-0.478704.820503.64790K562WDR3
C2orf43ENSG00000118961.101668.220402071.91220-0.312702.679301.83230K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C2orf43 is not available on ENCORE database.





9 RBPs can affect the splicing of C2orf43 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC2orf43ENSG00000118961.10chr2-2093973020939965209013292090141220974569209747390.090000.000500.01189includedK562SRSF1
SEC2orf43ENSG00000118961.10chr2-210010692100122520990014209901582102279621022874-0.110000.000720.01582excludedK562SRSF1
SEC2orf43ENSG00000118961.10chr2-209397302093996520901329209014122097456920974739-0.393000.000000.00000excludedHepG2U2AF2
SEC2orf43ENSG00000118961.10chr2-209397302093996520901329209014122097456920974739-0.136000.002840.09601excludedHepG2SFPQ
SEC2orf43ENSG00000118961.10chr2-209397302093996520901329209014122097456920974739-0.223000.000000.00036excludedK562LARP4
SEC2orf43ENSG00000118961.10chr2-209397302093996520901329209014122097456920974739-0.155000.006110.09422excludedK562U2AF1
SEC2orf43ENSG00000118961.10chr2-209397302093996520901329209014122097456920974739-0.214000.000860.09804excludedK562HNRNPM
SEC2orf43ENSG00000118961.10chr2-2099001420990158209745692097473921001069210012250.117000.000800.02124includedHepG2SRSF1
SEC2orf43ENSG00000118961.10chr2-210010692100122520990014209901582102279621022874-0.116000.005560.09550excludedHepG2SRSF1
SEC2orf43ENSG00000118961.10chr2-209397302093996520901329209014122097456920974739-0.141000.001120.06999excludedK562HNRNPUL1
MXEC2orf43ENSG00000118961.10chr2-20990014209901582100105121001225209746172097473921022796210228490.166000.005970.062051includedK562DROSHA
MXEC2orf43ENSG00000118961.10chr2-2099001420990158210010512100122520974617209747392102279621022849-0.156000.003580.094172includedHepG2SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C2orf43 is not avaliable on ENCORE database.