C12orf49

General Information

Gene Name       : C12orf49
Gene ID             : ENSG00000111412.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C12orf49)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C12orf49ENSG00000111412.55.857.746.79ENCSR000AEF
HepG2C12orf49ENSG00000111412.515.5316.4415.98ENCSR985KAT
K562C12orf49ENSG00000111412.58.045.376.71ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C12orf49 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C12orf49 RNA is bound by 4 proteins.  







eCLIP assay for C12orf49 is not avaliable on ENCORE database.





4 proteins are bound to C12orf49 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12117153970117154147-3'-UTR,intron-Distal4.794546.44805K562IGF2BP1
chr12117155213117155272-3'-UTR,intron-Distal,intron-Proximal5.559034.37209K562PUM2
chr12117175705117175842-5'-UTR,CDS,intron-Distal,intron-Proximal5.1161257.77022HepG2DDX3X
chr12117175600117175705-CDS,intron-Distal,intron-Proximal6.5107332.26318HepG2DDX3X
chr12117175012117175180-intron-Distal6.5836816.44511HepG2PCBP2
chr12117175417117175516-intron-Distal5.9673515.50831HepG2PCBP2
chr12117175198117175272-intron-Distal5.7100610.66887HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C12orf49 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C12orf49 is not available on ENCORE database.

  • 116 RBPs can affect the levels of C12orf49.  








The Knockdown/knockout RNA-Seq assay for C12orf49 is not available on ENCORE database.





116 RBPs can affect the gene expression of C12orf49 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C12orf49ENSG00000111412.41145.12220593.953500.9470024.1679022.77320HepG2ACO1
C12orf49ENSG00000111412.41138.38570768.191200.567405.449504.11640HepG2ADAR
C12orf49ENSG00000111412.4943.25410558.600800.755706.354505.58530HepG2AKAP1
C12orf49ENSG00000111412.4805.01420596.690000.431904.653003.67830HepG2AKAP8L
C12orf49ENSG00000111412.4740.52070462.184800.680005.733104.62560HepG2ASCC1
C12orf49ENSG00000111412.4598.26940857.59440-0.519503.232202.21970HepG2BCCIP
C12orf49ENSG00000111412.4341.79230884.20200-1.3713010.170809.11780HepG2BOP1
C12orf49ENSG00000111412.41183.28080439.110701.4300025.9779023.94190HepG2CIRBP
C12orf49ENSG00000111412.4621.69970430.445300.530302.453201.73710HepG2CNOT7
C12orf49ENSG00000111412.4179.56910811.77880-2.1765017.3005015.75730HepG2CPSF6
C12orf49ENSG00000111412.4643.73440787.75820-0.291302.261101.34260HepG2YBX3
C12orf49ENSG00000111412.4735.16670529.746600.472703.572902.36620HepG2CSTF2
C12orf49ENSG00000111412.4778.68590942.17280-0.275002.543601.82750HepG2DAZAP1
C12orf49ENSG00000111412.4474.37390788.88010-0.733809.834107.87140HepG2DDX1
C12orf49ENSG00000111412.41154.37220568.206701.0225016.5366015.04800HepG2DDX21
C12orf49ENSG00000111412.4404.99640555.62450-0.456202.825801.90050HepG2DDX24
C12orf49ENSG00000111412.4397.47390638.77920-0.684505.343103.47570HepG2DDX28
C12orf49ENSG00000111412.4944.14820535.074700.819208.413907.37290HepG2DDX3X
C12orf49ENSG00000111412.4382.52600521.55230-0.447302.825501.51940HepG2DDX47
C12orf49ENSG00000111412.4517.05570843.18750-0.705505.512604.46600HepG2DDX55
C12orf49ENSG00000111412.4609.30230921.82350-0.597302.323601.43080HepG2DDX59
C12orf49ENSG00000111412.4354.81910635.23520-0.840204.190002.95300HepG2DDX5
C12orf49ENSG00000111412.4668.27650459.693500.539703.331002.66020HepG2DDX6
C12orf49ENSG00000111412.4354.81210746.07910-1.0723015.1700013.17000HepG2DHX30
C12orf49ENSG00000111412.4705.34160568.235700.311702.380701.74510HepG2DKC1
C12orf49ENSG00000111412.4335.20780773.55170-1.2064023.7496021.90670HepG2DNAJC21
C12orf49ENSG00000111412.4528.69240766.67430-0.536207.495106.49290HepG2DNAJC2
C12orf49ENSG00000111412.41168.85860542.269501.1079016.2521014.30100HepG2EEF2
C12orf49ENSG00000111412.4195.47780441.86170-1.1766010.816909.69320HepG2EIF2S1
C12orf49ENSG00000111412.4844.81430536.306300.655507.414205.79340HepG2EIF3G
C12orf49ENSG00000111412.4655.71520488.283500.425302.227001.65200HepG2EIF4A3
C12orf49ENSG00000111412.4743.25340475.461300.644403.908203.09670HepG2EIF4B
C12orf49ENSG00000111412.4295.14700929.60980-1.6552045.5781043.06880HepG2EIF4G1
C12orf49ENSG00000111412.4623.17390890.48900-0.515004.136403.15050HepG2EIF4G2
C12orf49ENSG00000111412.41617.363301125.302100.523209.130108.14290HepG2ETF1
C12orf49ENSG00000111412.4398.15740541.26580-0.443002.614901.49850HepG2FASTKD2
C12orf49ENSG00000111412.41381.23730683.646201.0145012.9026011.42150HepG2FIP1L1
C12orf49ENSG00000111412.4417.20270813.10130-0.962704.298803.03840HepG2FTO
C12orf49ENSG00000111412.4172.64780314.30770-0.864306.261905.10620HepG2FUBP3
C12orf49ENSG00000111412.41341.03630492.735001.4444020.7961019.08320HepG2FXR1
C12orf49ENSG00000111412.4914.65230391.957501.2224018.6023016.51510HepG2GEMIN5
C12orf49ENSG00000111412.41027.63840636.918000.690106.781305.17100HepG2GNB2L1
C12orf49ENSG00000111412.4662.12290920.30520-0.475002.227201.64920HepG2GPKOW
C12orf49ENSG00000111412.4665.66720398.486500.740204.798503.34320HepG2GRSF1
C12orf49ENSG00000111412.41782.40250780.962001.1904026.5318024.90230HepG2HNRNPA1
C12orf49ENSG00000111412.4615.57060865.93890-0.492305.480304.24220HepG2HNRNPA2B1
C12orf49ENSG00000111412.4409.42630868.66040-1.0852015.5503014.03630HepG2HNRNPC
C12orf49ENSG00000111412.4496.00970983.66580-0.9878014.9872013.49210HepG2HNRNPF
C12orf49ENSG00000111412.4814.84350462.892700.815708.691507.50520HepG2HNRNPK
C12orf49ENSG00000111412.4530.61530858.21260-0.6937011.5588010.26500HepG2HNRNPL
C12orf49ENSG00000111412.4505.17620878.25600-0.797904.138803.38420HepG2HNRNPLL
C12orf49ENSG00000111412.41012.52760471.741701.1018019.7540017.63350HepG2HNRNPM
C12orf49ENSG00000111412.4324.97350862.91850-1.4089037.1503035.15070HepG2HNRNPU
C12orf49ENSG00000111412.4444.98400968.64290-1.1222018.0619016.39810HepG2IGF2BP1
C12orf49ENSG00000111412.4604.66700464.560000.380202.073401.48010HepG2IGF2BP2
C12orf49ENSG00000111412.4789.98680436.027800.857303.328602.24860HepG2IGF2BP3
C12orf49ENSG00000111412.4506.00460881.44530-0.8007016.7502015.12470HepG2ILF2
C12orf49ENSG00000111412.42856.197301244.827101.1981017.9382015.83800HepG2LARP4
C12orf49ENSG00000111412.4704.22270492.907300.514603.443502.71140HepG2MAGOH
C12orf49ENSG00000111412.41501.96760495.653501.5993028.9897027.12240HepG2MATR3
C12orf49ENSG00000111412.4976.57640553.386200.8193011.226609.71200HepG2MSI2
C12orf49ENSG00000111412.4605.49380895.50870-0.564602.580401.64850HepG2MTPAP
C12orf49ENSG00000111412.41204.12690507.318701.2469015.6018014.18260HepG2NCBP2
C12orf49ENSG00000111412.4278.23320778.67600-1.4847010.104808.74650HepG2NSUN2
C12orf49ENSG00000111412.4693.55060451.753400.618404.713303.78260HepG2PABPC4
C12orf49ENSG00000111412.4906.26090499.269200.8600015.8709014.61160HepG2PCBP1
C12orf49ENSG00000111412.41092.60860653.017000.742505.453804.03280HepG2PCBP2
C12orf49ENSG00000111412.4368.62860598.69480-0.699704.815202.63860HepG2PHF6
C12orf49ENSG00000111412.4523.01950769.65700-0.557406.473005.38050HepG2PPIL4
C12orf49ENSG00000111412.4501.25780610.32920-0.284002.012401.34570HepG2PRPF4
C12orf49ENSG00000111412.4825.19990650.484900.343101.994201.30400HepG2PRPF8
C12orf49ENSG00000111412.4955.70390508.005400.9116017.5029016.35410HepG2PTBP1
C12orf49ENSG00000111412.4611.98030891.86720-0.543305.004704.23220HepG2PUF60
C12orf49ENSG00000111412.41379.95560604.970601.1896040.1399038.34120HepG2PUS1
C12orf49ENSG00000111412.4333.03770550.22440-0.724307.314206.37040HepG2QKI
C12orf49ENSG00000111412.4991.57630630.118700.654003.398002.61880HepG2RAVER1
C12orf49ENSG00000111412.41723.18290940.535500.8734010.156909.30420HepG2RBM22
C12orf49ENSG00000111412.4672.04290499.348100.428403.069502.36350HepG2RBM25
C12orf49ENSG00000111412.41125.34600611.041000.880909.465007.53630HepG2RCC2
C12orf49ENSG00000111412.41719.03290565.377601.6042062.9958061.23310HepG2NELFE
C12orf49ENSG00000111412.4848.43150526.542700.688109.775908.72410HepG2RECQL
C12orf49ENSG00000111412.4646.591201059.45580-0.712407.994506.92610HepG2RPLP0
C12orf49ENSG00000111412.4329.08870619.07420-0.911606.447805.04940HepG2RPS10
C12orf49ENSG00000111412.4827.65310428.337500.9502013.3302012.11010HepG2RPS19
C12orf49ENSG00000111412.4297.87530432.33210-0.537402.601501.82640HepG2RPS3A
C12orf49ENSG00000111412.4469.72090643.46760-0.454102.413401.67450HepG2RRP9
C12orf49ENSG00000111412.4314.94470768.47620-1.2869030.0561028.25490HepG2SAFB2
C12orf49ENSG00000111412.41791.38650619.629201.5315023.2135021.19630HepG2SF3A3
C12orf49ENSG00000111412.4923.57880528.934500.8040013.3464012.20050HepG2SF3B4
C12orf49ENSG00000111412.4615.10460855.23770-0.475505.839304.88130HepG2SLBP
C12orf49ENSG00000111412.41251.56230896.188500.481808.579007.54550HepG2SMN1
C12orf49ENSG00000111412.4157.84720642.79280-2.0258028.4175025.37210HepG2SMNDC1
C12orf49ENSG00000111412.4666.75360967.28810-0.536802.226101.52880HepG2SNRNP70
C12orf49ENSG00000111412.41584.17130552.078701.5207058.5844057.04160HepG2SRSF1
C12orf49ENSG00000111412.41065.79240880.633400.275201.992301.45030HepG2SRSF5
C12orf49ENSG00000111412.4535.32200966.37450-0.8522012.1360010.85720HepG2SRSF7
C12orf49ENSG00000111412.4695.09320449.133000.630005.220504.50470HepG2SRSF9
C12orf49ENSG00000111412.4584.39360922.28760-0.6583010.8928010.00570HepG2SSB
C12orf49ENSG00000111412.4274.83060456.71050-0.732704.172702.67820HepG2STAU1
C12orf49ENSG00000111412.41256.000601001.484700.326604.401403.65140HepG2SUCLG1
C12orf49ENSG00000111412.4442.54990839.39000-0.923508.909907.80900HepG2SUPV3L1
C12orf49ENSG00000111412.4634.46290855.78710-0.431702.040801.40630HepG2TARDBP
C12orf49ENSG00000111412.4499.88540838.54470-0.7463010.236409.38000HepG2TIAL1
C12orf49ENSG00000111412.4568.91550845.97820-0.572408.025507.14380HepG2TRIM56
C12orf49ENSG00000111412.41034.38250584.864800.822509.251108.09300HepG2U2AF1
C12orf49ENSG00000111412.4839.00390402.387901.060003.336902.25180HepG2U2AF2
C12orf49ENSG00000111412.4340.00110922.37870-1.4398019.0108016.82830HepG2UBE2L3
C12orf49ENSG00000111412.4764.98820530.536800.527906.271805.42970HepG2UTP3
C12orf49ENSG00000111412.4263.10610387.24640-0.557602.665401.59210HepG2XPO5
C12orf49ENSG00000111412.41122.41880693.020300.695505.122903.70830HepG2XRCC6
C12orf49ENSG00000111412.4192.21640602.33850-1.6478037.0612035.16430HepG2ZC3H8
C12orf49ENSG00000111412.4671.58380436.319000.622103.600702.94840K562AQR
C12orf49ENSG00000111412.4309.28040182.435000.761405.003203.89870K562EIF4A3
C12orf49ENSG00000111412.4389.45230256.905800.600102.533901.71570K562FMR1
C12orf49ENSG00000111412.4458.81600189.723201.2739017.0973015.70530K562FXR1
C12orf49ENSG00000111412.4333.02450224.362300.569703.508002.55540K562MAGOH
C12orf49ENSG00000111412.4426.73820273.939000.639403.145601.81910K562PABPC1
C12orf49ENSG00000111412.4302.34410199.619600.598803.188902.13880K562PCBP2
C12orf49ENSG00000111412.4471.68600267.218200.819706.278605.14870K562PRPF8
C12orf49ENSG00000111412.4930.60060533.706100.802009.005207.52310K562PUF60
C12orf49ENSG00000111412.4284.87390208.999700.446702.111701.38210K562RBM22
C12orf49ENSG00000111412.4363.33030229.258900.664203.638202.51540K562SF3B1
C12orf49ENSG00000111412.4266.48630163.255400.706804.546203.43960K562SF3B4
C12orf49ENSG00000111412.4104.97170225.81720-1.105205.224602.44990K562SMNDC1
C12orf49ENSG00000111412.4349.43050213.702500.709305.028304.07880K562SRSF1
C12orf49ENSG00000111412.4418.76120259.365000.691005.703204.51530K562SYNCRIP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C12orf49 is not available on ENCORE database.





5 RBPs can affect the splicing of C12orf49 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC12orf49ENSG00000111412.4chr12-117158100117158252117157567117157681117160871117161028-0.144000.003840.06143excludedHepG2U2AF1
SEC12orf49ENSG00000111412.4chr12-1171608711171610281171581001171582521171755941171758660.127000.009320.08635includedHepG2U2AF2
SEC12orf49ENSG00000111412.4chr12-117172962117173101117160871117161028117175594117175866-0.135000.000330.00550excludedHepG2U2AF2
SEC12orf49ENSG00000111412.4chr12-1171608711171610281171581001171582521171755941171758660.149000.001420.05815includedHepG2SFPQ
SEC12orf49ENSG00000111412.4chr12-117157567117157681117153592117155698117175594117175866-0.127000.000900.06089excludedHepG2HNRNPL
A3SSC12orf49ENSG00000111412.4chr12-1171581001171583031171581001171582521171608711171610280.092000.006760.03764longerK562AQR
MXEC12orf49ENSG00000111412.4chr12-1171575671171576811171608711171610281171535921171556981171755941171758660.234000.000030.000351includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C12orf49 is not avaliable on ENCORE database.