ZNF428

General Information

Gene Name       : ZNF428
Gene ID             : ENSG00000131116.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF428)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF428ENSG00000131116.112.017.244.62ENCSR000AEF
HepG2ZNF428ENSG00000131116.1111.545.668.60ENCSR985KAT
K562ZNF428ENSG00000131116.1113.8310.0311.93ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF428 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF428 RNA is bound by 14 proteins.  







eCLIP assay for ZNF428 is not avaliable on ENCORE database.





14 proteins are bound to ZNF428 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr194411148044111558-3'-UTR,intron-Distal4.122444.13641K562TARDBP
chr194411163244111732-3'-UTR,intron-Distal,intron-Proximal4.2237528.09956K562DDX6
chr194411163144111719-3'-UTR,intron-Distal,intron-Proximal5.7199111.46328HepG2LARP4
chr194411162144111719-3'-UTR,intron-Distal,intron-Proximal6.1926217.76104K562APOBEC3C
chr194411163044111718-3'-UTR,intron-Distal,intron-Proximal3.785228.61107K562CSTF2T
chr194411162544111689-3'-UTR,intron-Distal,intron-Proximal6.4039430.87216K562PABPC4
chr194411163344111722-3'-UTR,intron-Distal,intron-Proximal3.816609.62187K562LARP4
chr194411163344111723-3'-UTR,intron-Distal,intron-Proximal5.1096625.24672K562GTF2F1
chr194411163544111705-3'-UTR,intron-Distal,intron-Proximal3.193364.89070K562UCHL5
chr194411163044111722-3'-UTR,intron-Distal,intron-Proximal4.763383.03048HepG2GTF2F1
chr194411165044111749-3'-UTR,intron-Distal,intron-Proximal3.866363.29499HepG2PRPF4
chr194411839244118482-5'-UTR,CDS,intron-Distal3.063405.32471K562DDX3X
chr194411840944118466-5'-UTR,CDS,intron-Distal4.627465.35746HepG2DDX3X
chr194411842644118559-5'-UTR,CDS,intron-Distal3.067166.91403K562FTO
chr194411848244118561-5'-UTR,intron-Distal3.875219.27595K562DDX3X
chr194411846644118547-5'-UTR,intron-Distal5.4367510.32974HepG2DDX3X
chr194411843444118551-5'-UTR,CDS,intron-Distal3.035793.06445HepG2EIF3D
chr194411208444112181-CDS,intron-Distal3.256503.71253K562LIN28B
chr194411754344117599-intron-Distal4.156573.40087HepG2RBFOX2
chr194411785344117988-intron-Distal5.118627.71339HepG2RBFOX2
chr194411766044117769-intron-Distal4.799275.52571HepG2RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF428 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF428 is not available on ENCORE database.

  • 78 RBPs can affect the levels of ZNF428.  








The Knockdown/knockout RNA-Seq assay for ZNF428 is not available on ENCORE database.





78 RBPs can affect the gene expression of ZNF428 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF428ENSG00000131116.7314.39790204.456700.620702.793801.84710HepG2ABCF1
ZNF428ENSG00000131116.7262.88400172.582600.607003.794503.10360HepG2ACO1
ZNF428ENSG00000131116.7382.07100156.419301.288309.713708.78390HepG2AKAP1
ZNF428ENSG00000131116.7312.98840227.545700.459902.062801.45340HepG2AUH
ZNF428ENSG00000131116.7317.01880213.638200.569302.432501.52480HepG2CCAR1
ZNF428ENSG00000131116.7183.08950122.955300.574301.981201.31960HepG2CIRBP
ZNF428ENSG00000131116.7284.37870172.521700.720905.392504.52130HepG2CKAP4
ZNF428ENSG00000131116.7233.88110149.816400.642502.674102.05780HepG2DDX3X
ZNF428ENSG00000131116.7236.55150123.381200.938903.555902.69320HepG2DDX55
ZNF428ENSG00000131116.7235.90920165.108800.514702.451701.80770HepG2DKC1
ZNF428ENSG00000131116.7114.8803072.023400.673502.219601.58330HepG2DNAJC21
ZNF428ENSG00000131116.7143.8008071.377301.010402.282101.67750HepG2DNAJC2
ZNF428ENSG00000131116.7202.12830102.226000.983403.655302.60730HepG2EEF2
ZNF428ENSG00000131116.7469.73260261.262000.846209.015808.03420HepG2ETF1
ZNF428ENSG00000131116.7274.35020168.623300.702104.177003.15070HepG2EWSR1
ZNF428ENSG00000131116.754.73110130.62650-1.255003.161502.07390HepG2FTO
ZNF428ENSG00000131116.798.18130148.94440-0.601302.013801.33450HepG2FUBP3
ZNF428ENSG00000131116.7251.84980137.994800.867904.642103.76190HepG2FXR1
ZNF428ENSG00000131116.7126.3764072.713300.797302.632702.00010HepG2HNRNPA1
ZNF428ENSG00000131116.7166.8002080.876801.044204.593203.71440HepG2HNRNPC
ZNF428ENSG00000131116.7273.10430129.673001.074506.897905.83300HepG2HNRNPK
ZNF428ENSG00000131116.7209.58990141.698300.564602.794002.11790HepG2HNRNPL
ZNF428ENSG00000131116.7177.5614080.342301.144006.458505.56420HepG2HNRNPU
ZNF428ENSG00000131116.7139.6274082.067600.766603.316502.52020HepG2ILF2
ZNF428ENSG00000131116.7366.51500225.779300.698903.685902.72780HepG2LARP4
ZNF428ENSG00000131116.7222.17140138.043300.686502.923402.24970HepG2MAGOH
ZNF428ENSG00000131116.7134.3457071.659500.906603.175802.39140HepG2PPIL4
ZNF428ENSG00000131116.7178.4390095.086300.908003.139102.28360HepG2PRPF8
ZNF428ENSG00000131116.7241.46970156.295900.627503.719003.05320HepG2PUM1
ZNF428ENSG00000131116.7478.36350218.364801.1313014.0785013.09260HepG2RBM22
ZNF428ENSG00000131116.7185.41180106.309800.802403.330002.23540HepG2RBM27
ZNF428ENSG00000131116.7287.43660150.101400.937206.964506.17460HepG2NELFE
ZNF428ENSG00000131116.7156.8149080.748200.957504.081103.34940HepG2RPS19
ZNF428ENSG00000131116.7233.0445098.048801.248907.914906.60700HepG2RPS2
ZNF428ENSG00000131116.7114.2482071.550300.675002.252201.66080HepG2SAFB2
ZNF428ENSG00000131116.7430.52230208.238201.047802.330801.71190HepG2SF3A3
ZNF428ENSG00000131116.7223.99190140.412500.673703.502502.84800HepG2SF3B4
ZNF428ENSG00000131116.7156.1791083.443100.904204.580503.78850HepG2SMN1
ZNF428ENSG00000131116.768.12590155.34130-1.189204.479403.47420HepG2SNRNP70
ZNF428ENSG00000131116.7332.82600246.631600.432302.656302.16150HepG2SRFBP1
ZNF428ENSG00000131116.7222.43070146.566300.601702.918902.43680HepG2SRSF1
ZNF428ENSG00000131116.7269.06030165.330800.702504.633603.86560HepG2SUCLG1
ZNF428ENSG00000131116.776.62530131.75610-0.782002.758002.19860HepG2TAF15
ZNF428ENSG00000131116.7191.8933078.080201.297207.677506.92090HepG2TIAL1
ZNF428ENSG00000131116.7228.14120143.839900.665403.179902.23740HepG2TUFM
ZNF428ENSG00000131116.7393.31570178.297201.141306.548105.69200HepG2UTP3
ZNF428ENSG00000131116.7229.36730120.881300.924003.558702.74470HepG2XRN2
ZNF428ENSG00000131116.7195.50390115.036800.765004.249903.44530HepG2ZC3H8
ZNF428ENSG00000131116.7135.26090213.68700-0.659802.503501.38660K562AARS
ZNF428ENSG00000131116.7480.33320349.974500.456703.461802.84000K562AGGF1
ZNF428ENSG00000131116.7545.73570384.573800.504803.755102.57150K562AKAP8
ZNF428ENSG00000131116.7502.21120364.165500.463603.012002.32960K562AKAP8L
ZNF428ENSG00000131116.7650.24550423.660900.618005.237904.47500K562AQR
ZNF428ENSG00000131116.7266.84590195.770500.446702.242901.37820K562BCLAF1
ZNF428ENSG00000131116.7318.34140179.046800.830105.738504.08010K562CCAR1
ZNF428ENSG00000131116.7575.12880418.235000.459503.546702.18850K562CCDC124
ZNF428ENSG00000131116.7453.62720329.540700.461003.118101.93680K562CPEB4
ZNF428ENSG00000131116.7288.83090159.393700.857505.072603.81760K562EFTUD2
ZNF428ENSG00000131116.7267.13980170.626100.646702.860101.80820K562EIF3D
ZNF428ENSG00000131116.7657.47680489.015500.427003.425602.38390K562EIF4G2
ZNF428ENSG00000131116.7441.46210241.640700.869307.761706.26980K562FIP1L1
ZNF428ENSG00000131116.7291.55680222.424700.390401.844601.33060K562FXR1
ZNF428ENSG00000131116.735.4100076.01690-1.102202.874902.15170K562G3BP2
ZNF428ENSG00000131116.7624.65300461.798200.435702.953902.17410K562GRSF1
ZNF428ENSG00000131116.7640.58120428.102400.581305.994904.66870K562HNRNPU
ZNF428ENSG00000131116.7130.10700226.48060-0.799704.489902.66260K562LARP7
ZNF428ENSG00000131116.7242.81810141.425500.779704.639003.54460K562MAGOH
ZNF428ENSG00000131116.7505.52480369.946900.450402.664701.61430K562MAK16
ZNF428ENSG00000131116.7527.13680402.800000.388003.147902.35610K562NSUN2
ZNF428ENSG00000131116.7484.79440300.608500.689402.739801.75640K562PABPN1
ZNF428ENSG00000131116.7206.07090125.823400.711603.208902.15520K562PCBP2
ZNF428ENSG00000131116.7457.85100274.333100.738806.041204.74860K562PPIG
ZNF428ENSG00000131116.7328.85560155.109301.084107.694706.43660K562PRPF8
ZNF428ENSG00000131116.7215.24740137.407900.647403.382602.65680K562PTBP1
ZNF428ENSG00000131116.7709.27970361.144000.973706.987106.16950K562PUS1
ZNF428ENSG00000131116.7501.14770351.887300.510004.002703.30530K562RBM15
ZNF428ENSG00000131116.7194.25610131.727100.560302.369701.59710K562RBM22
ZNF428ENSG00000131116.7175.91190339.86930-0.950105.109402.87120K562RPS3A
ZNF428ENSG00000131116.7124.0719079.043000.650402.296601.52000K562SF3B4
ZNF428ENSG00000131116.7314.99610134.711901.2254010.887109.49230K562SRSF1
ZNF428ENSG00000131116.7209.46210127.240800.719003.614202.38200K562SRSF5
ZNF428ENSG00000131116.7188.47520291.54780-0.629404.140602.26000K562SRSF9
ZNF428ENSG00000131116.7233.68360136.323600.777403.342902.56340K562TARDBP
ZNF428ENSG00000131116.7234.41390131.503100.833904.893903.75880K562TIA1
ZNF428ENSG00000131116.7202.52180129.075800.649802.787501.69090K562TRA2A
ZNF428ENSG00000131116.7262.38570161.862200.696803.215501.87860K562XRN2
ZNF428ENSG00000131116.7203.21810371.61080-0.870803.193101.44710K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF428 is not available on ENCORE database.





10 RBPs can affect the splicing of ZNF428 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNF428ENSG00000131116.7chr19-441229844412315044118088441185864412370944123780-0.090000.000050.00280excludedK562AKAP8L
SEZNF428ENSG00000131116.7chr19-4412298444123150441180884411858644123709441237800.065000.002040.02231includedK562AQR
SEZNF428ENSG00000131116.7chr19-4411265644112755441117794411225944118380441186090.056000.000020.00816includedK562DROSHA
SEZNF428ENSG00000131116.7chr19-441229844412315044118088441185864412370944123780-0.077000.000270.00565excludedK562PUS1
SEZNF428ENSG00000131116.7chr19-441229844412315044118088441185864412370944123780-0.606000.000000.00042excludedHepG2SFPQ
SEZNF428ENSG00000131116.7chr19-441229844412315044118088441185864412370944123780-0.110000.002200.05642excludedHepG2SF3A3
SEZNF428ENSG00000131116.7chr19-441229844412315044118088441185864412370944123780-0.567000.000090.01852excludedHepG2RBFOX2
SEZNF428ENSG00000131116.7chr19-441229844412315044118088441185864412370944123780-0.094000.000710.02104excludedK562RBM15
SEZNF428ENSG00000131116.7chr19-441126564411275544111779441122594411838044118609-0.055000.000010.00064excludedK562RBM15
SEZNF428ENSG00000131116.7chr19-4411265644112755441117794411225944118380441185860.083000.000060.01660includedHepG2KHSRP
SEZNF428ENSG00000131116.7chr19-4411265644112755441117794411225944118380441186090.200000.000000.00000includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF428 is not avaliable on ENCORE database.