UBAP1

General Information

Gene Name : UBAP1
Gene ID : ENSG00000165006.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: UBAP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	UBAP1	ENSG00000165006.13	25.31	25.83	25.57	ENCSR000AEF
HepG2	UBAP1	ENSG00000165006.13	23.09	25.34	24.21	ENCSR985KAT
K562	UBAP1	ENSG00000165006.13	17.99	19.42	18.70	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for UBAP1 is not avaliable on ENCORE database.

Proteins bound to RNA

UBAP1 RNA is bound by 19 proteins.

CanvasJS.com

eCLIP assay for UBAP1 is not avaliable on ENCORE database.

19 proteins are bound to UBAP1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	34198368	34198438	+	intron-Distal	5.37498	22.11872	HepG2	HNRNPM
chr9	34220158	34220209	+	intron-Distal	6.67034	21.03038	HepG2	PCBP2
chr9	34182693	34182754	+	intron-Distal	4.52762	19.64277	HepG2	PTBP1
chr9	34182697	34182752	+	intron-Distal	5.73071	19.63041	K562	PTBP1
chr9	34198055	34198176	+	intron-Distal	3.99236	13.58602	HepG2	HNRNPM
chr9	34220181	34220228	+	intron-Distal	4.74569	13.56411	K562	ILF3
chr9	34220143	34220181	+	intron-Distal	5.50586	12.62352	K562	ILF3
chr9	34198067	34198163	+	intron-Distal	4.90713	11.88696	K562	HNRNPM
chr9	34179282	34179372	+	intron-Distal,intron-Proximal	5.38333	11.34764	HepG2	PRPF4
chr9	34179281	34179376	+	intron-Distal,intron-Proximal	4.95716	11.15861	HepG2	FAM120A
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 51 entries

eCLIP assay for UBAP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for UBAP1 is not available on ENCORE database.
74 RBPs can affect the levels of UBAP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for UBAP1 is not available on ENCORE database.

74 RBPs can affect the gene expression of UBAP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
UBAP1	ENSG00000165006.9	2373.91050	1206.74980	0.97600	38.35990	37.05660	HepG2	SRFBP1
UBAP1	ENSG00000165006.9	2723.44740	1013.92720	1.42540	32.08190	30.20910	K562	PUS1
UBAP1	ENSG00000165006.9	1870.63790	1047.73030	0.83620	25.08790	23.88880	HepG2	SSB
UBAP1	ENSG00000165006.9	2469.69750	1184.09830	1.06040	22.07980	20.52740	HepG2	RPLP0
UBAP1	ENSG00000165006.9	2008.02430	969.52860	1.05030	20.28870	18.87030	K562	AQR
UBAP1	ENSG00000165006.9	1662.18290	982.64440	0.75820	19.11080	17.74110	K562	AGGF1
UBAP1	ENSG00000165006.9	1609.35860	962.61360	0.74140	18.59190	17.24980	HepG2	UTP3
UBAP1	ENSG00000165006.9	1882.77650	1022.50200	0.88070	16.14310	14.32940	K562	AKAP8L
UBAP1	ENSG00000165006.9	1827.73250	1059.68010	0.78630	11.21180	9.92440	HepG2	U2AF1
UBAP1	ENSG00000165006.9	2155.99960	988.01400	1.12570	10.83080	9.68160	K562	RBM15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 87 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for UBAP1 is not available on ENCORE database.

9 RBPs can affect the splicing of UBAP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	UBAP1	ENSG00000165006.9	chr9	+	34249741	34249959			34249776	34249959	34241182	34242106	0.11900	0.00000	0.00000	longer	K562	AQR
A5SS	UBAP1	ENSG00000165006.9	chr9	+	34250655	34250869			34250655	34250757	34251389	34252521	0.15000	0.00000	0.00000	longer	K562	AQR
A5SS	UBAP1	ENSG00000165006.9	chr9	+	34250655	34250869			34250655	34250757	34251389	34252520	0.05400	0.00001	0.00150	longer	K562	AKAP8L
MXE	UBAP1	ENSG00000165006.9	chr9	+	34220905	34220946	34234213	34234338	34179002	34179238	34241182	34242106	0.31400	0.00008	0.03146	1included	HepG2	FAM120A
MXE	UBAP1	ENSG00000165006.9	chr9	+	34220905	34220946	34234213	34234338	34179002	34179238	34241182	34242106	-0.21200	0.00014	0.05151	2included	K562	BUD13
SE	UBAP1	ENSG00000165006.9	chr9	+	34220905	34220946			34179010	34179238	34234213	34234338	-0.13400	0.00066	0.02218	excluded	HepG2	SF3A3
SE	UBAP1	ENSG00000165006.9	chr9	+	34220905	34220946			34179010	34179238	34234213	34234338	-0.22800	0.00098	0.04564	excluded	HepG2	SF3B4
SE	UBAP1	ENSG00000165006.9	chr9	+	34220905	34220946			34179010	34179238	34234213	34234338	0.21800	0.00257	0.08954	included	HepG2	SFPQ
SE	UBAP1	ENSG00000165006.9	chr9	+	34220905	34220946			34179010	34179238	34234213	34234338	0.18400	0.00396	0.04397	included	HepG2	U2AF2
SE	UBAP1	ENSG00000165006.9	chr9	+	34203378	34203533			34179002	34179238	34220905	34220946	0.11300	0.00543	0.07401	included	K562	HNRNPC

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

UBAP1

General Information

Functions

Localization

Domains (AlphaFold: UBAP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for UBAP1 is not avaliable on ENCORE database.

19 proteins are bound to UBAP1 RNA:

eCLIP assay for UBAP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for UBAP1 is not available on ENCORE database.

74 RBPs can affect the gene expression of UBAP1 :

The Knockdown/knockout RNA-Seq assay for UBAP1 is not available on ENCORE database.

9 RBPs can affect the splicing of UBAP1 :

The Knockdown/knockout RNA-Seq assay for UBAP1 is not avaliable on ENCORE database.