UBAP1

General Information

Gene Name       : UBAP1
Gene ID             : ENSG00000165006.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: UBAP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878UBAP1ENSG00000165006.1325.3125.8325.57ENCSR000AEF
HepG2UBAP1ENSG00000165006.1323.0925.3424.21ENCSR985KAT
K562UBAP1ENSG00000165006.1317.9919.4218.70ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for UBAP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • UBAP1 RNA is bound by 19 proteins.  







eCLIP assay for UBAP1 is not avaliable on ENCORE database.





19 proteins are bound to UBAP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr93425185334251954+3'-UTR4.179744.20997HepG2UPF1
chr93425231934252394+3'-UTR3.635783.22721K562YBX3
chr93422091934220982+CDS,intron-Distal,intron-Proximal4.788994.45914HepG2PRPF8
chr93424162734241798+CDS4.494423.25872K562IGF2BP1
chr93424179834241906+CDS3.041983.02821K562IGF2BP1
chr93424976034249822+CDS,intron-Distal,intron-Proximal3.199873.26275K562BUD13
chr93420880934208904+intron-Distal4.722413.58660HepG2ILF3
chr93422018134220228+intron-Distal4.7456913.56411K562ILF3
chr93422013334220214+intron-Distal4.846927.56728HepG2ILF3
chr93417924134179350+intron-Distal,intron-Proximal4.069606.58230HepG2AQR
chr93417940934179537+intron-Distal4.647544.99324HepG2GTF2F1
chr93422015834220209+intron-Distal6.6703421.03038HepG2PCBP2
chr93417928234179372+intron-Distal,intron-Proximal5.3833311.34764HepG2PRPF4
chr93422013334220158+intron-Distal5.328939.83211HepG2PCBP2
chr93419805534198176+intron-Distal3.9923613.58602HepG2HNRNPM
chr93419796834198044+intron-Distal3.753424.18053K562HNRNPM
chr93417937234179497+intron-Distal5.3134010.82157HepG2PRPF4
chr93419806734198163+intron-Distal4.9071311.88696K562HNRNPM
chr93422014334220181+intron-Distal5.5058612.62352K562ILF3
chr93418526134185447+intron-Distal3.684275.68907K562ILF3
chr93422016034220243+intron-Distal4.956588.61093K562CSTF2T
chr93421171834211829+intron-Distal4.212668.64076K562PTBP1
chr93419854934198624+intron-Distal4.986585.04868K562HNRNPM
chr93422016034220210+intron-Distal4.425934.70962HepG2GTF2F1
chr93420956634209642+intron-Distal4.267564.72162K562KHSRP
chr93419865934198699+intron-Distal4.482415.02084HepG2HNRNPM
chr93420265134202713+intron-Distal4.233216.82317K562EIF4G2
chr93418269334182754+intron-Distal4.5276219.64277HepG2PTBP1
chr93419832834198369+intron-Distal4.979675.31505K562HNRNPM
chr93419833234198349+intron-Distal4.651347.94355HepG2HNRNPM
chr93422612534226194+intron-Distal4.440733.26170K562EIF4G2
chr93422013234220199+intron-Distal4.584463.92947HepG2DDX59
chr93420258334202723+intron-Distal4.025273.08128K562IGF2BP1
chr93419836934198429+intron-Distal6.0880911.07164K562HNRNPM
chr93419836834198438+intron-Distal5.3749822.11872HepG2HNRNPM
chr93419854334198631+intron-Distal3.469477.56588HepG2HNRNPM
chr93421171134211831+intron-Distal3.570305.37771HepG2PTBP1
chr93423113534231214+intron-Distal5.470179.02011K562EIF4G2
chr93417928534179374+intron-Distal,intron-Proximal3.457764.92762HepG2CSTF2T
chr93417937634179480+intron-Distal3.972387.69118HepG2FAM120A
chr93419030034190353+intron-Distal3.978863.84404HepG2HNRNPC
chr93421698634217062+intron-Distal5.125105.77028HepG2PCBP2
chr93420258234202651+intron-Distal3.801964.00200K562EIF4G2
chr93422076534220815+intron-Distal,intron-Proximal4.771194.17937HepG2PCBP2
chr93417957034179653+intron-Distal3.706176.23254HepG2PRPF4
chr93418540334185519+intron-Distal4.207153.72818HepG2ILF3
chr93417935834179445+intron-Distal3.850096.22996K562CSTF2T
chr93418269734182752+intron-Distal5.7307119.63041K562PTBP1
chr93417928134179376+intron-Distal,intron-Proximal4.9571611.15861HepG2FAM120A
chr93420768534207743+intron-Distal5.122023.96837K562XRCC6
chr93417927734179491+intron-Distal,intron-Proximal6.2518910.62792K562GTF2F1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for UBAP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for UBAP1 is not available on ENCORE database.

  • 74 RBPs can affect the levels of UBAP1.  








The Knockdown/knockout RNA-Seq assay for UBAP1 is not available on ENCORE database.





74 RBPs can affect the gene expression of UBAP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
UBAP1ENSG00000165006.91701.169001226.724600.471603.997302.87800HepG2ABCF1
UBAP1ENSG00000165006.91160.98100812.720500.514407.735606.53020HepG2AKAP8L
UBAP1ENSG00000165006.91386.304501113.370800.316203.667802.89740HepG2AUH
UBAP1ENSG00000165006.91058.25810808.737100.387805.194104.33440HepG2CKAP4
UBAP1ENSG00000165006.9943.82500725.972100.378502.800502.11920HepG2DDX21
UBAP1ENSG00000165006.91745.808301262.323600.467703.942803.20730HepG2DDX3X
UBAP1ENSG00000165006.91019.20120773.939100.397004.489003.66400HepG2DKC1
UBAP1ENSG00000165006.9481.15600668.59710-0.474602.595001.52740HepG2AGO1
UBAP1ENSG00000165006.91714.457001152.075800.573405.102304.23570HepG2EIF4A3
UBAP1ENSG00000165006.91277.03360979.850000.382102.837902.01370HepG2EIF4G2
UBAP1ENSG00000165006.91473.202601278.320700.204601.873001.35790HepG2ETF1
UBAP1ENSG00000165006.91086.31590790.456100.458604.473203.41690HepG2EWSR1
UBAP1ENSG00000165006.9378.85560532.60250-0.491402.559001.33510HepG2FKBP4
UBAP1ENSG00000165006.9774.717901162.18390-0.585105.244604.31300HepG2FXR1
UBAP1ENSG00000165006.9909.38610649.582200.485303.404702.26950HepG2GNB2L1
UBAP1ENSG00000165006.91015.66190782.514900.376102.821002.16850HepG2HNRNPA1
UBAP1ENSG00000165006.91278.39120870.414000.554505.835304.85660HepG2HNRNPC
UBAP1ENSG00000165006.91295.538901099.093900.237102.019501.40000HepG2HNRNPF
UBAP1ENSG00000165006.9783.972001091.52220-0.477503.953703.13310HepG2HNRNPK
UBAP1ENSG00000165006.9921.110101305.68770-0.503403.404502.03670HepG2HSPD1
UBAP1ENSG00000165006.91351.588201082.286700.320502.600201.89830HepG2IGF2BP1
UBAP1ENSG00000165006.9596.10670883.21820-0.567209.421208.14790HepG2ILF2
UBAP1ENSG00000165006.91329.822501065.866400.319102.011901.38800HepG2PABPC4
UBAP1ENSG00000165006.9694.44060855.85030-0.301502.620001.79240HepG2PARN
UBAP1ENSG00000165006.9630.74030771.20440-0.290102.191801.52790HepG2PPIL4
UBAP1ENSG00000165006.91287.40500981.444400.391403.328902.68380HepG2PUF60
UBAP1ENSG00000165006.9896.760801041.81360-0.216302.175701.63690HepG2PUM1
UBAP1ENSG00000165006.91418.025101041.073100.445704.957004.07320HepG2PUM2
UBAP1ENSG00000165006.91071.50490823.966100.378904.782804.01510HepG2PUS1
UBAP1ENSG00000165006.91162.89570776.833600.581902.954302.22720HepG2RAVER1
UBAP1ENSG00000165006.91551.885901068.435000.538408.624507.82780HepG2RBM22
UBAP1ENSG00000165006.91308.181801059.834300.303602.353201.72560HepG2RBM25
UBAP1ENSG00000165006.92469.697501184.098301.0604022.0798020.52740HepG2RPLP0
UBAP1ENSG00000165006.9644.07860488.255100.399502.020601.33910HepG2RRP9
UBAP1ENSG00000165006.92032.643101124.265800.854308.534907.29880HepG2SF3A3
UBAP1ENSG00000165006.91409.76460939.471300.585406.529305.48310HepG2SF3B1
UBAP1ENSG00000165006.92373.910501206.749800.9760038.3599037.05660HepG2SRFBP1
UBAP1ENSG00000165006.91582.768701171.753800.433706.644305.98830HepG2SRSF1
UBAP1ENSG00000165006.91576.863501010.795000.641505.379203.94550HepG2SRSF3
UBAP1ENSG00000165006.91340.745201079.847700.312103.221402.47660HepG2SRSF7
UBAP1ENSG00000165006.91870.637901047.730300.8362025.0879023.88880HepG2SSB
UBAP1ENSG00000165006.9946.95470636.987700.571904.093503.29490HepG2SUPV3L1
UBAP1ENSG00000165006.91827.732501059.680100.7863011.211809.92440HepG2U2AF1
UBAP1ENSG00000165006.91659.67550680.097801.287004.862303.52490HepG2U2AF2
UBAP1ENSG00000165006.91188.11550997.053300.252802.529101.85610HepG2UPF1
UBAP1ENSG00000165006.91609.35860962.613600.7414018.5919017.24980HepG2UTP3
UBAP1ENSG00000165006.9844.88430627.044900.430102.652301.94300HepG2XRN2
UBAP1ENSG00000165006.91447.197901011.663800.5164010.186309.03410HepG2ZC3H8
UBAP1ENSG00000165006.91662.18290982.644400.7582019.1108017.74110K562AGGF1
UBAP1ENSG00000165006.91573.551401079.842600.543103.915002.70210K562AKAP8
UBAP1ENSG00000165006.91882.776501022.502000.8807016.1431014.32940K562AKAP8L
UBAP1ENSG00000165006.9887.313401187.95780-0.421003.528202.10950K562APOBEC3C
UBAP1ENSG00000165006.92008.02430969.528601.0503020.2887018.87030K562AQR
UBAP1ENSG00000165006.91420.870201072.881000.405204.286003.12180K562ATP5C1
UBAP1ENSG00000165006.91502.326601174.262000.355303.893202.46430K562CCDC124
UBAP1ENSG00000165006.91448.19360893.527400.696604.236902.87670K562CNOT7
UBAP1ENSG00000165006.91045.00920846.748600.303402.757501.54720K562DDX21
UBAP1ENSG00000165006.91656.224801145.761000.531509.738508.60430K562DDX47
UBAP1ENSG00000165006.91464.754701100.185200.412804.163703.05840K562DKC1
UBAP1ENSG00000165006.9978.44430554.868600.818207.829105.93940K562EIF3D
UBAP1ENSG00000165006.9588.22420465.701000.336902.528701.76750K562EIF3G
UBAP1ENSG00000165006.9707.88530546.684200.372702.762401.47510K562EWSR1
UBAP1ENSG00000165006.91141.15430864.907300.399803.082002.17480K562FMR1
UBAP1ENSG00000165006.91644.19180762.720601.108106.738404.54330K562HNRNPA2B1
UBAP1ENSG00000165006.91079.85260711.939900.600906.780105.88490K562HNRNPC
UBAP1ENSG00000165006.91839.156801085.074200.761205.509604.25660K562KIF1C
UBAP1ENSG00000165006.91493.811401038.728400.524103.281002.08290K562MAK16
UBAP1ENSG00000165006.91627.26840852.028000.9334010.376208.26460K562NAA15
UBAP1ENSG00000165006.91131.64030940.396500.267002.440801.73570K562NSUN2
UBAP1ENSG00000165006.91235.12110666.789100.889203.476702.33000K562PABPN1
UBAP1ENSG00000165006.91418.70720792.369200.840202.849001.37690K562PPP1R8
UBAP1ENSG00000165006.9755.48130504.364700.582804.509603.55300K562PRPF8
UBAP1ENSG00000165006.91826.437201468.920900.314202.520301.74170K562PUF60
UBAP1ENSG00000165006.92723.447401013.927201.4254032.0819030.20910K562PUS1
UBAP1ENSG00000165006.92155.99960988.014001.1257010.830809.68160K562RBM15
UBAP1ENSG00000165006.9856.74420579.487300.564005.572203.59850K562RBM25
UBAP1ENSG00000165006.9749.27740515.636100.539003.053701.65450K562RRP9
UBAP1ENSG00000165006.91124.85700609.579400.883803.444602.06380K562SF1
UBAP1ENSG00000165006.91702.73130700.401001.281508.027805.54590K562SNRNP200
UBAP1ENSG00000165006.9856.29710647.182100.403803.263302.49930K562SRSF1
UBAP1ENSG00000165006.91008.42320755.633800.416204.669303.13090K562SRSF7
UBAP1ENSG00000165006.91597.17140837.558300.931204.246402.31990K562SUPT6H
UBAP1ENSG00000165006.9709.69920488.242300.539503.612802.43620K562SUPV3L1
UBAP1ENSG00000165006.91344.841901084.155700.310803.432802.01010K562TROVE2
UBAP1ENSG00000165006.9617.52750819.62230-0.408503.420001.54960K562UPF2
UBAP1ENSG00000165006.91906.965301028.132100.891202.755801.46920K562UTP18
UBAP1ENSG00000165006.91373.990901092.071800.331202.715401.86140K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for UBAP1 is not available on ENCORE database.





9 RBPs can affect the splicing of UBAP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUBAP1ENSG00000165006.9chr9+3422090534220946341790103417923834234213342343380.184000.003960.04397includedHepG2U2AF2
SEUBAP1ENSG00000165006.9chr9+3422090534220946341790103417923834234213342343380.218000.002570.08954includedHepG2SFPQ
SEUBAP1ENSG00000165006.9chr9+342209053422094634179010341792383423421334234338-0.134000.000660.02218excludedHepG2SF3A3
SEUBAP1ENSG00000165006.9chr9+342209053422094634179010341792383423421334234338-0.228000.000980.04564excludedHepG2SF3B4
SEUBAP1ENSG00000165006.9chr9+3420337834203533341790023417923834220905342209460.113000.005430.07401includedK562HNRNPC
A3SSUBAP1ENSG00000165006.9chr9+3424974134249959342497763424995934241182342421060.119000.000000.00000longerK562AQR
A5SSUBAP1ENSG00000165006.9chr9+3425065534250869342506553425075734251389342525210.150000.000000.00000longerK562AQR
A5SSUBAP1ENSG00000165006.9chr9+3425065534250869342506553425075734251389342525200.054000.000010.00150longerK562AKAP8L
MXEUBAP1ENSG00000165006.9chr9+34220905342209463423421334234338341790023417923834241182342421060.314000.000080.031461includedHepG2FAM120A
MXEUBAP1ENSG00000165006.9chr9+3422090534220946342342133423433834179002341792383424118234242106-0.212000.000140.051512includedK562BUD13

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for UBAP1 is not avaliable on ENCORE database.