TUBGCP3

General Information

Gene Name       : TUBGCP3
Gene ID             : ENSG00000126216.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TUBGCP3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TUBGCP3ENSG00000126216.1413.7614.3014.03ENCSR000AEF
HepG2TUBGCP3ENSG00000126216.1416.7916.8916.84ENCSR985KAT
K562TUBGCP3ENSG00000126216.1413.1213.3013.21ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TUBGCP3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TUBGCP3 RNA is bound by 35 proteins.  







eCLIP assay for TUBGCP3 is not avaliable on ENCORE database.





35 proteins are bound to TUBGCP3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr13113139566113139621-3'-UTR,intron-Distal5.108796.34419K562PUM2
chr13113139365113139476-3'-UTR,intron-Distal6.666538.89419K562PUM2
chr13113139355113139412-3'-UTR,intron-Distal4.232563.66896HepG2FUBP3
chr13113242291113242421-5'-UTR,CDS,intron-Distal3.884415.40651HepG2PPIG
chr13113242221113242298-5'-UTR,CDS,intron-Distal3.846563.60441HepG2GRWD1
chr13113242304113242413-5'-UTR,intron-Distal4.342235.48791HepG2DDX3X
chr13113208370113208437-CDS,intron-Distal,intron-Proximal3.622065.38431K562LIN28B
chr13113212465113212520-CDS,intron-Distal,intron-Proximal4.648515.93128HepG2PRPF8
chr13113219429113219486-CDS,intron-Distal3.310873.17151K562UCHL5
chr13113209227113209325-CDS,intron-Distal,intron-Proximal3.521203.37821K562XRCC6
chr13113209208113209301-CDS,intron-Distal3.220393.71797HepG2BCLAF1
chr13113170717113170764-CDS,intron-Distal,intron-Proximal3.348785.76569HepG2PRPF8
chr13113200122113200201-CDS,intron-Distal,intron-Proximal5.046199.87931HepG2U2AF2
chr13113158313113158375-CDS,intron-Distal,intron-Proximal4.074736.04280HepG2PRPF8
chr13113213619113213691-CDS,intron-Distal,intron-Proximal3.502464.71060K562BUD13
chr13113174151113174225-CDS,intron-Distal,intron-Proximal5.2493313.78100HepG2PRPF8
chr13113212566113212590-CDS,intron-Distal4.106334.12025K562YBX3
chr13113170794113170852-CDS,intron-Distal3.252664.56058HepG2BCLAF1
chr13113242216113242268-CDS,intron-Distal3.236685.30095HepG2PPIG
chr13113212513113212571-CDS,intron-Distal3.877083.79347HepG2GRWD1
chr13113210365113210458-CDS,intron-Distal,intron-Proximal3.149686.52802K562ZNF622
chr13113212590113212613-CDS,intron-Distal3.088073.29348K562YBX3
chr13113210465113210553-CDS,intron-Distal,intron-Proximal4.268976.60968K562BUD13
chr13113170783113170862-CDS,intron-Distal3.102513.40321HepG2GRWD1
chr13113208357113208371-intron-Distal,intron-Proximal4.590318.30573K562AQR
chr13113241901113241944-intron-Distal4.820375.44892HepG2FAM120A
chr13113207512113207567-intron-Distal3.464925.66476K562DROSHA
chr13113207457113207615-intron-Distal5.582588.41272HepG2FAM120A
chr13113192987113193108-intron-Distal3.086203.51696K562KHSRP
chr13113199114113199164-intron-Distal3.134024.34719K562TIA1
chr13113206874113206964-intron-Distal4.200273.86024K562EWSR1
chr13113164383113164445-intron-Distal4.143373.60235HepG2HNRNPM
chr13113207473113207573-intron-Distal3.258483.23466HepG2CSTF2T
chr13113212464113212496-intron-Distal,intron-Proximal3.565704.88100K562AQR
chr13113207495113207621-intron-Distal4.396706.29610HepG2RBFOX2
chr13113208302113208357-intron-Distal,intron-Proximal5.8311512.06330K562AQR
chr13113208767113208830-intron-Distal3.014574.77974K562TIA1
chr13113207370113207429-intron-Distal5.212896.10540K562EIF4G2
chr13113200970113201043-intron-Distal4.145233.27829HepG2MATR3
chr13113207126113207174-intron-Distal3.998474.89657K562EIF4G2
chr13113207457113207512-intron-Distal3.719303.12311K562DROSHA
chr13113209050113209163-intron-Distal,intron-Proximal4.0524312.03035K562KHSRP
chr13113180575113180699-intron-Distal4.033893.87294K562TARDBP
chr13113241901113242033-intron-Distal4.571544.42691HepG2GTF2F1
chr13113241907113242021-intron-Distal4.068604.22598K562CSTF2T
chr13113206994113207072-intron-Distal4.405303.49140K562RBFOX2
chr13113207343113207423-intron-Distal3.288085.32645HepG2RBFOX2
chr13113207452113207552-intron-Distal4.111313.30696K562EXOSC5
chr13113165049113165105-intron-Distal4.606375.94008HepG2HNRNPM
chr13113180789113180908-intron-Distal3.909933.60944K562TARDBP
chr13113200394113200434-intron-Distal3.212093.46325HepG2SUGP2
chr13113143683113143756-intron-Distal5.072795.31214HepG2XPO5
chr13113241944113242049-intron-Distal5.621039.60876HepG2FAM120A
chr13113194411113194471-intron-Distal4.560684.76505K562HNRNPK
chr13113241900113242062-intron-Distal5.137288.98213HepG2PRPF4
chr13113207468113207583-intron-Distal3.882156.67564K562CSTF2T
chr13113207409113207518-intron-Distal3.9550410.88532K562AATF
chr13113208873113208934-intron-Distal4.838054.75034HepG2XPO5
chr13113207236113207280-intron-Distal4.864735.14653K562EIF4G2
chr13113193435113193534-intron-Distal4.6690912.89375K562TARDBP
chr13113194414113194487-intron-Distal3.277124.20477K562HNRNPL
chr13113217179113217262-intron-Distal4.301164.28571K562HNRNPM
chr13113165487113165534-intron-Distal4.344864.38558HepG2HNRNPM
chr13113207244113207311-intron-Distal4.216083.80314K562CSTF2T
chr13113184860113185016-intron-Distal4.099714.65731HepG2CSTF2
chr13113209062113209105-intron-Distal,intron-Proximal3.953183.02181K562PRPF8
chr13113194411113194478-intron-Distal3.934973.45317HepG2HNRNPL
chr13113198899113199050-intron-Distal3.068465.57010K562KHSRP
chr13113201742113201792-intron-Distal3.834683.07980HepG2HNRNPM
chr13113210244113210343-intron-Distal,intron-Proximal4.281204.22101K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TUBGCP3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TUBGCP3 is not available on ENCORE database.

  • 66 RBPs can affect the levels of TUBGCP3.  








The Knockdown/knockout RNA-Seq assay for TUBGCP3 is not available on ENCORE database.





66 RBPs can affect the gene expression of TUBGCP3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TUBGCP3ENSG00000126216.8397.67000560.04520-0.494004.618203.64700HepG2AKAP8L
TUBGCP3ENSG00000126216.8658.96500877.94120-0.413904.566103.72210HepG2AUH
TUBGCP3ENSG00000126216.8342.78800588.79240-0.780405.653904.29470HepG2BCCIP
TUBGCP3ENSG00000126216.8358.41540511.60970-0.513402.774801.87440HepG2BCLAF1
TUBGCP3ENSG00000126216.8329.94520529.94810-0.683605.479704.67260HepG2BOP1
TUBGCP3ENSG00000126216.8383.59960514.62220-0.423902.941602.14890HepG2CALR
TUBGCP3ENSG00000126216.8365.18790486.52320-0.413902.220401.59610HepG2CPSF6
TUBGCP3ENSG00000126216.8564.13600734.87220-0.381503.482702.77900HepG2CELF1
TUBGCP3ENSG00000126216.8366.62840504.61810-0.460902.912702.21830HepG2DDX21
TUBGCP3ENSG00000126216.8337.13860578.90770-0.780005.647304.59010HepG2DDX55
TUBGCP3ENSG00000126216.8297.10380505.78610-0.767605.093404.27790HepG2DDX6
TUBGCP3ENSG00000126216.8318.68430433.56220-0.444103.594702.86920HepG2DNAJC2
TUBGCP3ENSG00000126216.8315.25850486.26540-0.625203.912103.21410HepG2EIF2S1
TUBGCP3ENSG00000126216.8584.72600746.78170-0.352902.259401.51850HepG2EIF4G2
TUBGCP3ENSG00000126216.8550.515901007.98000-0.8726016.4021015.13700HepG2ETF1
TUBGCP3ENSG00000126216.8408.38320551.51720-0.433502.216801.64080HepG2GPKOW
TUBGCP3ENSG00000126216.8476.39690726.22430-0.608307.519506.10910HepG2HNRNPA2B1
TUBGCP3ENSG00000126216.8425.49830627.85430-0.561304.700403.79540HepG2HNRNPF
TUBGCP3ENSG00000126216.8543.47090719.88610-0.405604.458003.61800HepG2HNRNPL
TUBGCP3ENSG00000126216.8384.09760487.95450-0.345302.421101.85100HepG2HNRNPU
TUBGCP3ENSG00000126216.8424.56490618.25800-0.542204.648203.73140HepG2IGF2BP1
TUBGCP3ENSG00000126216.8611.42310849.01060-0.473602.770301.93890HepG2LARP4
TUBGCP3ENSG00000126216.8328.06100514.31070-0.648705.040103.39040HepG2LIN28B
TUBGCP3ENSG00000126216.8370.11540540.17500-0.545503.766902.82720HepG2MSI2
TUBGCP3ENSG00000126216.8631.45920783.60890-0.311402.468901.75110HepG2NOL12
TUBGCP3ENSG00000126216.8217.47360341.78160-0.652202.686901.81410HepG2PABPC1
TUBGCP3ENSG00000126216.8305.46050446.56810-0.547903.041802.19800HepG2PRPF8
TUBGCP3ENSG00000126216.8581.45940747.99970-0.363402.602602.02210HepG2PUF60
TUBGCP3ENSG00000126216.8600.11310793.44420-0.402903.488702.73940HepG2PUM2
TUBGCP3ENSG00000126216.8468.53360694.35730-0.567505.387904.23890HepG2RBM15
TUBGCP3ENSG00000126216.8655.43790842.48770-0.362202.910102.38220HepG2RBM22
TUBGCP3ENSG00000126216.8413.58450588.64860-0.509204.580003.91610HepG2NELFE
TUBGCP3ENSG00000126216.8352.39010676.34070-0.9406011.127809.91580HepG2RPLP0
TUBGCP3ENSG00000126216.8304.86020400.80130-0.394702.101101.55850HepG2RPS19
TUBGCP3ENSG00000126216.8262.09160441.74700-0.753104.804003.80100HepG2RRP9
TUBGCP3ENSG00000126216.8890.31780633.026300.492002.719802.05140HepG2SF3A3
TUBGCP3ENSG00000126216.8351.58230548.74710-0.642303.916202.75920HepG2SMNDC1
TUBGCP3ENSG00000126216.8416.92770579.65650-0.475401.963501.30910HepG2SNRNP70
TUBGCP3ENSG00000126216.8381.41480951.56400-1.3189034.3534033.10420HepG2SRFBP1
TUBGCP3ENSG00000126216.8917.45870574.799100.6745010.045509.26970HepG2SRSF1
TUBGCP3ENSG00000126216.8501.70180616.84320-0.298102.084701.47110HepG2SRSF7
TUBGCP3ENSG00000126216.8381.36810467.62300-0.294201.916701.44130HepG2SRSF9
TUBGCP3ENSG00000126216.8584.80470839.91490-0.522307.296406.36740HepG2SUCLG1
TUBGCP3ENSG00000126216.8336.14460576.29010-0.777705.608404.69830HepG2SUPV3L1
TUBGCP3ENSG00000126216.8676.83310516.630300.389603.031202.44800HepG2TAF15
TUBGCP3ENSG00000126216.8659.78500422.250000.643802.500001.48250HepG2TBRG4
TUBGCP3ENSG00000126216.8173.02920386.26490-1.158609.364707.75100HepG2TFIP11
TUBGCP3ENSG00000126216.8380.96950474.11830-0.315601.731901.31640HepG2TIAL1
TUBGCP3ENSG00000126216.8366.67370478.37880-0.383702.910802.33580HepG2TRIM56
TUBGCP3ENSG00000126216.8326.72500561.39850-0.7809010.138008.94830HepG2UPF1
TUBGCP3ENSG00000126216.8311.95710527.69570-0.758404.265203.00510HepG2UPF2
TUBGCP3ENSG00000126216.8356.75370567.29450-0.669204.736403.79630HepG2XRN2
TUBGCP3ENSG00000126216.8345.83320491.94630-0.508404.551703.72500HepG2ZC3H8
TUBGCP3ENSG00000126216.81617.909201083.719400.5780011.1621010.11750K562AGGF1
TUBGCP3ENSG00000126216.81532.649701127.653200.442604.339203.51600K562AKAP8L
TUBGCP3ENSG00000126216.8782.816401021.17390-0.383502.564901.99510K562AQR
TUBGCP3ENSG00000126216.81424.507701183.168400.267702.445101.59070K562ATP5C1
TUBGCP3ENSG00000126216.8451.39410736.82650-0.706907.407706.07170K562EIF4A3
TUBGCP3ENSG00000126216.8574.85950766.26970-0.414603.808903.11620K562FXR1
TUBGCP3ENSG00000126216.8904.77260692.521900.385603.053901.53520K562G3BP1
TUBGCP3ENSG00000126216.81485.597201196.742900.311802.476401.70090K562KIF1C
TUBGCP3ENSG00000126216.8590.01890761.26120-0.367602.593701.77860K562MAGOH
TUBGCP3ENSG00000126216.81409.11210939.697700.584404.320003.14300K562NAA15
TUBGCP3ENSG00000126216.82045.974801118.365400.871306.524405.73150K562PUS1
TUBGCP3ENSG00000126216.81690.496201089.643100.633508.455707.44420K562RBM15
TUBGCP3ENSG00000126216.8501.62620746.30100-0.573104.825503.33630K562NELFE
TUBGCP3ENSG00000126216.8465.61930785.45050-0.754406.802605.14630K562RPS3
TUBGCP3ENSG00000126216.81042.57470640.191000.703502.402901.31490K562SF1
TUBGCP3ENSG00000126216.81093.97730725.076800.593307.063605.94180K562SRSF1
TUBGCP3ENSG00000126216.8581.34450733.81260-0.336002.003401.39530K562TARDBP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TUBGCP3 is not available on ENCORE database.





4 RBPs can affect the splicing of TUBGCP3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETUBGCP3ENSG00000126216.8chr13-1131759761131761781131741991131743351131766331131768230.172000.001110.02936includedHepG2HNRNPK
SETUBGCP3ENSG00000126216.8chr13-1131998271131999101131816871131817981132000121132001790.373000.000070.00323includedK562RBM15
A3SSTUBGCP3ENSG00000126216.8chr13-1131812551131813811131812551131813641131816871131817980.111000.003430.02076longerK562AQR
MXETUBGCP3ENSG00000126216.8chr13-1132092001132092631132092901132093191132083701132084961132103651132105380.247000.001800.055801includedK562TAF15

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TUBGCP3 is not avaliable on ENCORE database.