TSN

General Information

Gene Name       : TSN
Gene ID             : ENSG00000211460.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TSN)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TSNENSG00000211460.1135.7734.3835.08ENCSR000AEF
HepG2TSNENSG00000211460.1156.9495.6976.31ENCSR985KAT
K562TSNENSG00000211460.1153.8453.4153.62ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TSN is not avaliable on ENCORE database.



Proteins bound to RNA
  • TSN RNA is bound by 16 proteins.  







eCLIP assay for TSN is not avaliable on ENCORE database.





16 proteins are bound to TSN RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2122523213122523330+3'-UTR3.723025.11796K562NOLC1
chr2122522775122522872+3'-UTR,CDS3.294785.74981HepG2GRWD1
chr2122523148122523242+3'-UTR4.9573215.18786HepG2SUB1
chr2122524770122524854+3'-UTR3.428863.60337HepG2FUBP3
chr2122524522122524572+3'-UTR5.180037.05883HepG2SUB1
chr2122524128122524228+3'-UTR4.2939255.15156K562PUM2
chr2122523110122523168+3'-UTR4.1764912.91015K562PABPC4
chr2122523646122523713+3'-UTR3.518214.31744K562YBX3
chr2122523735122523802+3'-UTR3.267293.29348K562YBX3
chr2122523213122523306+3'-UTR4.447883.98488K562TIA1
chr2122523242122523317+3'-UTR4.101209.85380HepG2SUB1
chr2122523166122523260+3'-UTR3.2575823.63752K562PUM2
chr2122513232122513414+5'-UTR,CDS,intron-Distal4.565705.85562K562GEMIN5
chr2122513348122513456+5'-UTR,CDS,intron-Distal,intron-Proximal3.291046.39282HepG2GRWD1
chr2122513245122513331+5'-UTR,intron-Distal4.6859125.16118K562DDX3X
chr2122513332122513385+5'-UTR,CDS,intron-Distal4.3146528.40004K562DDX3X
chr2122513255122513324+5'-UTR,intron-Distal3.978463.30425K562LIN28B
chr2122513333122513387+5'-UTR,CDS,intron-Distal3.730863.25521K562LIN28B
chr2122513247122513366+5'-UTR,CDS,intron-Distal3.8290012.88150HepG2DDX3X
chr2122513386122513422+CDS,intron-Distal,intron-Proximal3.4479221.93802K562DDX3X
chr2122518980122519069+CDS,intron-Distal,intron-Proximal4.196027.71869K562LIN28B
chr2122514874122514910+CDS,intron-Distal,intron-Proximal3.852674.91707K562DDX3X
chr2122514803122514853+CDS,intron-Distal,intron-Proximal3.047453.01994K562BUD13
chr2122514815122514833+CDS,intron-Distal,intron-Proximal3.3875610.26816K562DDX3X
chr2122513421122513494+intron-Distal,intron-Proximal4.823598.52787K562AQR
chr2122518834122518951+intron-Distal,intron-Proximal4.652836.93191K562KHSRP
chr2122513547122513653+intron-Distal,intron-Proximal3.098684.34900K562PRPF8
chr2122515054122515126+intron-Distal,intron-Proximal3.162303.31456K562TIA1
chr2122514925122515030+intron-Distal,intron-Proximal4.559684.85612K562PRPF8
chr2122515601122515692+intron-Distal5.085777.78973K562TARDBP
chr2122513445122513500+intron-Distal,intron-Proximal4.238874.23351K562BUD13
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TSN is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TSN is not available on ENCORE database.

  • 94 RBPs can affect the levels of TSN.  








The Knockdown/knockout RNA-Seq assay for TSN is not available on ENCORE database.





94 RBPs can affect the gene expression of TSN :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TSNENSG00000211460.72209.407401781.475900.310502.539101.50970HepG2AATF
TSNENSG00000211460.73270.642803812.28620-0.221103.128002.40470HepG2AUH
TSNENSG00000211460.71374.037902410.51640-0.8109010.505108.89860HepG2BCLAF1
TSNENSG00000211460.71179.694302334.75220-0.9849025.1642023.29570HepG2CALR
TSNENSG00000211460.72472.846803305.28230-0.418602.811701.82700HepG2CCAR1
TSNENSG00000211460.71652.674902868.66940-0.7956011.7993010.31330HepG2CIRBP
TSNENSG00000211460.72303.453201690.710100.446102.148001.48060HepG2CNOT7
TSNENSG00000211460.71168.150702025.22550-0.7939012.0431010.72480HepG2CPSF6
TSNENSG00000211460.71452.556201876.24130-0.369302.648501.56660HepG2CPSF7
TSNENSG00000211460.71648.881201977.77290-0.262402.839801.80830HepG2YBX3
TSNENSG00000211460.72660.272203827.43360-0.5248018.3560016.75510HepG2DAZAP1
TSNENSG00000211460.7733.919201966.79970-1.4222018.2089016.66290HepG2DDX21
TSNENSG00000211460.72651.749303495.66790-0.398603.373302.69170HepG2DDX3X
TSNENSG00000211460.72139.980402727.45020-0.350002.182501.48780HepG2DDX55
TSNENSG00000211460.72061.193003002.92590-0.542904.901804.10040HepG2DDX6
TSNENSG00000211460.71531.521101942.14140-0.342704.444803.56920HepG2DNAJC21
TSNENSG00000211460.71248.173601924.82220-0.6249017.2001015.70330HepG2DNAJC2
TSNENSG00000211460.71527.195102886.71120-0.9185014.5952013.30160HepG2EIF2S1
TSNENSG00000211460.71322.485303190.11920-1.2704022.9920021.19150HepG2EIF4A3
TSNENSG00000211460.71686.195003106.09740-0.881309.400808.17120HepG2EIF4B
TSNENSG00000211460.72806.171803617.00530-0.366203.626102.70090HepG2EIF4G2
TSNENSG00000211460.71143.562801393.25550-0.284902.424801.33300HepG2FAM120A
TSNENSG00000211460.71746.253002450.49310-0.488803.180201.98160HepG2FUS
TSNENSG00000211460.72356.012802985.85680-0.341802.401201.77880HepG2G3BP1
TSNENSG00000211460.7434.282902295.67780-2.4022069.8392067.22050HepG2GPKOW
TSNENSG00000211460.7670.947401960.74580-1.5471043.0770041.13920HepG2HNRNPA1
TSNENSG00000211460.71251.657002180.91090-0.8011013.6630012.23360HepG2HNRNPC
TSNENSG00000211460.71724.668402743.54730-0.669704.967904.04240HepG2HNRNPF
TSNENSG00000211460.72790.033103486.57120-0.321507.531906.46810HepG2HNRNPL
TSNENSG00000211460.71210.336102190.81420-0.8561013.0133011.78020HepG2HNRNPLL
TSNENSG00000211460.71901.382402166.49620-0.188301.990001.46620HepG2HNRNPU
TSNENSG00000211460.71609.576402701.65600-0.747205.272504.30600HepG2IGF2BP1
TSNENSG00000211460.72345.080703035.03780-0.372103.070902.36410HepG2IGF2BP2
TSNENSG00000211460.71377.749402213.01380-0.6837023.4010021.52100HepG2ILF2
TSNENSG00000211460.7956.683201609.52550-0.750503.400102.05570HepG2KHDRBS1
TSNENSG00000211460.71601.883203488.52470-1.1228013.9898012.15780HepG2LARP4
TSNENSG00000211460.71423.569903219.92970-1.1775023.0836021.29820HepG2MAGOH
TSNENSG00000211460.71195.542101861.96840-0.639206.351005.17250HepG2MSI2
TSNENSG00000211460.71614.696202234.50550-0.468702.786701.81570HepG2MTPAP
TSNENSG00000211460.72285.914403314.19060-0.535905.318304.45480HepG2NCBP2
TSNENSG00000211460.73208.134303795.26260-0.242502.744701.98390HepG2NOL12
TSNENSG00000211460.71485.331701942.62890-0.387203.413202.58200HepG2NSUN2
TSNENSG00000211460.71450.637202951.43670-1.0247017.3822015.61970HepG2PABPC4
TSNENSG00000211460.71504.046601932.35130-0.361504.755603.81530HepG2PPIL4
TSNENSG00000211460.72558.907102995.92430-0.227502.653902.11630HepG2PTBP1
TSNENSG00000211460.72689.688303622.84430-0.429705.131604.35060HepG2PUF60
TSNENSG00000211460.72557.466203842.97080-0.5875011.9287010.59240HepG2PUM2
TSNENSG00000211460.71676.588902181.80890-0.380007.080206.17180HepG2PUS1
TSNENSG00000211460.71929.936103244.73420-0.7495018.9333017.50010HepG2QKI
TSNENSG00000211460.7735.930702238.81280-1.6051018.8921017.20890HepG2RAVER1
TSNENSG00000211460.73022.703803658.36830-0.275403.665403.09090HepG2RBM22
TSNENSG00000211460.72375.366302944.77680-0.310003.181502.46340HepG2RBM25
TSNENSG00000211460.72519.732603334.20500-0.404108.102907.26400HepG2NELFE
TSNENSG00000211460.71944.777802954.79650-0.603505.140604.24800HepG2RPLP0
TSNENSG00000211460.71502.928601929.39380-0.360402.991402.32800HepG2SAFB2
TSNENSG00000211460.72575.110203119.20630-0.276504.228403.52190HepG2SF3B4
TSNENSG00000211460.72466.176603473.58400-0.4941015.5539014.13810HepG2SLBP
TSNENSG00000211460.72514.351602250.055100.160101.995801.43530HepG2SMN1
TSNENSG00000211460.71404.440002281.93260-0.700306.159604.68850HepG2SMNDC1
TSNENSG00000211460.74527.658703255.750600.4757013.1083012.24390HepG2SRSF1
TSNENSG00000211460.73189.586503576.93820-0.165401.960501.42190HepG2SRSF5
TSNENSG00000211460.71616.875402695.28850-0.737206.249005.27040HepG2SRSF7
TSNENSG00000211460.71966.363802648.70460-0.429809.352608.44330HepG2SRSF9
TSNENSG00000211460.72985.567303587.55690-0.265004.295403.68580HepG2SSB
TSNENSG00000211460.7971.215501553.50090-0.677704.912103.67940HepG2SUPT6H
TSNENSG00000211460.72389.057702926.32490-0.292603.810103.16970HepG2TAF15
TSNENSG00000211460.71096.307002135.55940-0.9620016.0050014.50750HepG2TARDBP
TSNENSG00000211460.72036.516602688.96890-0.400905.013403.89760HepG2TIA1
TSNENSG00000211460.71795.679502105.36690-0.229502.090501.64350HepG2TIAL1
TSNENSG00000211460.71453.875102123.96080-0.546908.737307.82290HepG2TRIM56
TSNENSG00000211460.73047.929003746.14560-0.297602.147101.41490HepG2UBE2L3
TSNENSG00000211460.71247.255701603.98580-0.362902.554101.82570HepG2UCHL5
TSNENSG00000211460.71942.997402672.80640-0.460104.118903.24220HepG2XRN2
TSNENSG00000211460.71882.321302235.85990-0.248303.938103.31670HepG2ZNF622
TSNENSG00000211460.75129.639904147.289500.306602.263301.72430K562AQR
TSNENSG00000211460.71601.435602453.81560-0.6157016.4463014.09000K562BCLAF1
TSNENSG00000211460.72274.949002806.72220-0.303102.573901.33990K562CIRBP
TSNENSG00000211460.71315.492601938.10080-0.559002.334101.60780K562CPSF6
TSNENSG00000211460.71498.698201842.87170-0.298202.568701.56520K562DDX3X
TSNENSG00000211460.74155.865503206.016100.374307.599106.59160K562DDX47
TSNENSG00000211460.71070.739502283.24860-1.0925018.5033014.90590K562DDX51
TSNENSG00000211460.71686.642602024.26520-0.263203.110401.81570K562EIF2S1
TSNENSG00000211460.71489.794501925.35710-0.370003.413702.50590K562EIF4A3
TSNENSG00000211460.71186.126201733.89910-0.547808.877606.68760K562EIF4B
TSNENSG00000211460.71618.330401946.50110-0.266402.756401.42030K562FUS
TSNENSG00000211460.72593.209902002.292300.373004.343903.61010K562FXR1
TSNENSG00000211460.71903.180702249.38460-0.241102.437601.37220K562GLRX3
TSNENSG00000211460.71033.696701850.51550-0.840104.945203.88630K562GPKOW
TSNENSG00000211460.71602.934002603.29960-0.6996013.2108011.14370K562HNRNPA1
TSNENSG00000211460.71090.153901841.63680-0.756506.705705.81660K562HNRNPC
TSNENSG00000211460.73446.607402615.612400.397903.585202.16070K562HNRNPK
TSNENSG00000211460.72948.799602191.911400.427803.529402.46490K562HNRNPM
TSNENSG00000211460.72097.731602663.48340-0.344503.252601.93260K562IGF2BP3
TSNENSG00000211460.71285.514601806.26480-0.490702.336801.53450K562METAP2
TSNENSG00000211460.72047.844602364.93640-0.207702.511401.74050K562MTPAP
TSNENSG00000211460.72029.608902627.64660-0.372609.314208.05390K562NSUN2
TSNENSG00000211460.73691.134702057.644100.8430015.3896013.60480K562PRPF8
TSNENSG00000211460.71234.247201651.12680-0.419802.838501.91980K562PSIP1
TSNENSG00000211460.75862.837104867.347600.268402.413001.65290K562PUF60
TSNENSG00000211460.76593.314105176.566800.348905.425103.88670K562PUM1
TSNENSG00000211460.71086.685401887.56970-0.796606.022703.83690K562RAVER1
TSNENSG00000211460.71142.125901505.98870-0.399002.881701.87000K562RCC2
TSNENSG00000211460.72155.672502698.33150-0.323902.559801.51400K562NELFE
TSNENSG00000211460.7585.117702656.41340-2.18270170.22450166.30000K562SRPK2
TSNENSG00000211460.73246.081902621.325200.308303.233202.47330K562SRSF1
TSNENSG00000211460.71437.478601992.68700-0.471203.758302.55810K562SUPV3L1
TSNENSG00000211460.72259.396001559.604700.534708.272306.84480K562SYNCRIP
TSNENSG00000211460.72007.826602653.02570-0.402003.736002.90860K562TARDBP
TSNENSG00000211460.72077.739202559.12360-0.300602.989502.13350K562TIA1
TSNENSG00000211460.71248.526601686.71450-0.434003.036002.03560K562TRIM56
TSNENSG00000211460.72355.115001980.506200.249802.300701.56950K562U2AF2
TSNENSG00000211460.71454.497402108.79230-0.535905.336203.88080K562UCHL5
TSNENSG00000211460.72011.490302786.15020-0.4700010.455909.17370K562UPF1
TSNENSG00000211460.71880.179702384.01940-0.342503.572602.58010K562WDR3
TSNENSG00000211460.72837.068402479.112600.194502.577301.75800K562WDR43
TSNENSG00000211460.71664.393302146.99060-0.367302.782601.57390K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TSN is not available on ENCORE database.





8 RBPs can affect the splicing of TSN :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETSNENSG00000211460.7chr2+1225141091225142671225132601225134211225148151225149090.058000.000010.00047includedHepG2U2AF1
SETSNENSG00000211460.7chr2+122520580122520660122518984122519100122522709122522794-0.051000.002000.03649excludedHepG2U2AF1
SETSNENSG00000211460.7chr2+122520580122520660122518984122519100122522709122522797-0.072000.000010.00027excludedHepG2U2AF2
SETSNENSG00000211460.7chr2+1225148231225150101225132601225134211225162851225163820.436000.001250.01479includedK562AQR
SETSNENSG00000211460.7chr2+122514815122514909122513256122513421122518984122519100-0.069000.000120.00201excludedK562AQR
SETSNENSG00000211460.7chr2+122518984122519100122513238122513421122520580122520660-0.082000.000000.00015excludedK562PUS1
SETSNENSG00000211460.7chr2+122520580122520660122518984122519100122522709122522797-0.056000.000270.02170excludedHepG2NCBP2
SETSNENSG00000211460.7chr2+122520580122520660122518984122519100122522709122522794-0.089000.000000.00000excludedHepG2SRSF1
SETSNENSG00000211460.7chr2+122518984122519100122513238122513421122520580122520660-0.052000.000300.01357excludedK562UTP18
A3SSTSNENSG00000211460.7chr2+1225205521225206601225205801225206601225189841225191000.109000.000000.00000longerK562AQR
A3SSTSNENSG00000211460.7chr2+1225189431225191001225189841225191001225162561225163820.082000.000000.00000longerK562AQR
A5SSTSNENSG00000211460.7chr2+1225148151225150101225148151225149091225162851225163820.072000.001200.04467longerK562PUS1
A5SSTSNENSG00000211460.7chr2+1225148151225150101225148151225149091225162851225163820.171000.000000.00000longerK562AQR
A5SSTSNENSG00000211460.7chr2+1225148151225150101225148151225149091225162851225163820.052000.000000.00073longerHepG2TAF15
MXETSNENSG00000211460.7chr2+122514815122514909122518984122519100122513256122513421122522709122523325-0.139000.000020.000732includedHepG2U2AF1
MXETSNENSG00000211460.7chr2+1225162851225163821225189431225191001225148231225150101225205801225206600.125000.000000.000001includedK562AQR
MXETSNENSG00000211460.7chr2+1225162561225163821225189841225191001225148151225149091225205801225206600.055000.000000.000001includedK562AQR
MXETSNENSG00000211460.7chr2+1225162561225163821225189431225191001225148231225150101225205801225206600.054000.000000.000001includedK562AQR
MXETSNENSG00000211460.7chr2+122516285122516382122518984122519100122514815122514909122522709122523325-0.057000.000000.000022includedK562AQR
MXETSNENSG00000211460.7chr2+122514823122514909122514940122515010122513260122513421122516285122516382-0.142000.000000.000002includedK562AQR
MXETSNENSG00000211460.7chr2+122514815122514909122518984122519100122513256122513421122522709122523325-0.080000.000000.000002includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TSN is not avaliable on ENCORE database.