SNRNP40

General Information

Gene Name       : SNRNP40
Gene ID             : ENSG00000060688.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SNRNP40)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNRNP40ENSG00000060688.1261.6764.1362.90ENCSR000AEF
HepG2SNRNP40ENSG00000060688.1272.0572.3772.21ENCSR985KAT
K562SNRNP40ENSG00000060688.12106.08104.26105.17ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNRNP40 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNRNP40 RNA is bound by 25 proteins.  







eCLIP assay for SNRNP40 is not avaliable on ENCORE database.





25 proteins are bound to SNRNP40 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr13173275731732859-3'-UTR,intron-Distal,intron-Proximal4.820655.48535K562GRWD1
chr13173272631732920-3'-UTR,intron-Distal,intron-Proximal3.270315.98862HepG2GRWD1
chr13173260831732671-3'-UTR,intron-Distal,intron-Proximal3.778236.31218K562ZC3H11A
chr13173256531732605-3'-UTR,intron-Distal,intron-Proximal4.9291920.64401K562PABPC4
chr13173276031732813-3'-UTR,intron-Distal,intron-Proximal3.311547.87605K562YBX3
chr13173280131732867-3'-UTR,intron-Distal3.723765.20401HepG2SUB1
chr13173271331732760-3'-UTR,intron-Distal,intron-Proximal3.582039.30098K562YBX3
chr13173263031732672-3'-UTR,intron-Distal,intron-Proximal3.8171411.05444K562PABPC4
chr13173291631732939-3'-UTR,CDS,intron-Distal3.875145.79938K562LIN28B
chr13173285931732969-3'-UTR,CDS,intron-Distal4.441499.81052K562GRWD1
chr13173277231732860-3'-UTR,intron-Distal,intron-Proximal3.157827.93618K562UCHL5
chr13173287031732916-3'-UTR,intron-Distal5.5246224.08921K562LIN28B
chr13176957331769644-5'-UTR,CDS,intron-Distal,intron-Proximal3.129724.75208K562DDX3X
chr13176951731769625-5'-UTR,CDS,intron-Distal,intron-Proximal3.183115.18770HepG2NCBP2
chr13174204231742097-CDS,intron-Distal,intron-Proximal3.532696.73042K562U2AF1
chr13174204131742102-CDS,intron-Distal,intron-Proximal3.038656.97078K562U2AF2
chr13176205931762130-CDS,intron-Distal,intron-Proximal4.1990014.92191HepG2PRPF8
chr13174071931740773-CDS,intron-Distal3.398693.59112HepG2PPIG
chr13173446431734554-CDS,intron-Distal,intron-Proximal3.617425.96294K562TIA1
chr13175422031754222-CDS,intron-Distal,intron-Proximal3.6066211.24774K562YBX3
chr13175421931754249-CDS,intron-Distal,intron-Proximal4.1498313.91165K562LIN28B
chr13176940631769463-CDS,intron-Distal4.442346.99120K562AQR
chr13173439631734448-CDS,intron-Distal4.616454.30948K562LIN28B
chr13174429831744320-CDS,intron-Distal4.1999114.71595K562YBX3
chr13176607931766174-CDS,intron-Distal3.969153.61890HepG2G3BP1
chr13174430431744343-CDS,intron-Distal4.5084818.86748K562LIN28B
chr13176476031764851-CDS,intron-Distal3.463089.04720K562ZNF622
chr13174414731744238-CDS,intron-Distal,intron-Proximal3.184885.47590K562PRPF8
chr13176221631762277-CDS,intron-Distal,intron-Proximal4.438908.46556K562BUD13
chr13174205431742102-CDS,intron-Distal,intron-Proximal3.472876.06585K562SF3B4
chr13176945131769514-CDS,intron-Distal4.515935.27053HepG2PPIG
chr13174430631744348-CDS,intron-Distal,intron-Proximal4.499023.15232HepG2LIN28B
chr13174210231742167-CDS,intron-Distal,intron-Proximal3.587019.85050K562SF3B4
chr13176219131762283-CDS,intron-Distal,intron-Proximal3.464965.01844HepG2U2AF2
chr13175422231754256-CDS,intron-Distal3.3687512.24328K562YBX3
chr13173433031734378-CDS,intron-Distal,intron-Proximal3.847656.80869K562AQR
chr13173447131734534-CDS,intron-Distal,intron-Proximal5.7733320.31933K562SF3B4
chr13174434331744347-CDS,intron-Distal,intron-Proximal4.2146514.42182K562LIN28B
chr13175427931754357-CDS,intron-Distal,intron-Proximal3.5165310.87543K562GPKOW
chr13176219631762276-CDS,intron-Distal,intron-Proximal6.0752521.70936K562U2AF2
chr13176200331762165-CDS,intron-Distal,intron-Proximal3.0358319.37681K562PRPF8
chr13176949431769534-CDS,intron-Distal3.795595.95764K562YBX3
chr13174434131744347-CDS,intron-Distal,intron-Proximal3.7568312.58976K562YBX3
chr13174432031744341-CDS,intron-Distal3.6260013.76185K562YBX3
chr13176209931762166-CDS,intron-Distal,intron-Proximal3.170633.50786HepG2G3BP1
chr13176467531764759-intron-Distal,intron-Proximal4.162636.01372K562AQR
chr13173973631739837-intron-Distal3.007406.89152K562HNRNPL
chr13173990631740002-intron-Distal4.682815.57507HepG2HNRNPL
chr13174002931740088-intron-Distal3.415126.65670K562HNRNPL
chr13173460531734675-intron-Distal,intron-Proximal4.451045.27543K562U2AF2
chr13176200731762091-intron-Distal,intron-Proximal4.408917.95645K562EFTUD2
chr13173756331737653-intron-Distal4.3983322.27367K562QKI
chr13176887231769014-intron-Distal4.343233.16986HepG2QKI
chr13176116631761320-intron-Distal3.090244.68136K562HNRNPL
chr13175413931754211-intron-Distal,intron-Proximal4.267207.44508K562PRPF8
chr13173987331739998-intron-Distal3.379497.88104K562PTBP1
chr13173756731737647-intron-Distal4.459367.75161HepG2QKI
chr13176187631761940-intron-Distal3.719396.87732K562KHDRBS1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNRNP40 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNRNP40 is not available on ENCORE database.

  • 98 RBPs can affect the levels of SNRNP40.  








The Knockdown/knockout RNA-Seq assay for SNRNP40 is not available on ENCORE database.





98 RBPs can affect the gene expression of SNRNP40 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNRNP40ENSG00000060688.8637.16670830.61860-0.382502.771801.36490HepG2ATP5C1
SNRNP40ENSG00000060688.8781.550501369.23520-0.8090019.0122017.51210HepG2AUH
SNRNP40ENSG00000060688.8446.41680751.56230-0.751506.509905.19450HepG2BCLAF1
SNRNP40ENSG00000060688.8429.43690569.07180-0.406202.465001.89650HepG2BOP1
SNRNP40ENSG00000060688.8465.83390689.66570-0.566105.350103.66870HepG2BUD13
SNRNP40ENSG00000060688.8533.13190745.93450-0.484604.307103.36980HepG2CALR
SNRNP40ENSG00000060688.8359.46490522.43130-0.539403.471002.70900HepG2CPSF6
SNRNP40ENSG00000060688.8970.525501198.61580-0.304502.846002.19570HepG2CELF1
SNRNP40ENSG00000060688.8977.724101288.66850-0.398405.782004.76590HepG2DAZAP1
SNRNP40ENSG00000060688.8283.60980709.39480-1.3227032.6081030.55650HepG2DDX19B
SNRNP40ENSG00000060688.8347.13630850.45940-1.2927016.4007014.73720HepG2DDX55
SNRNP40ENSG00000060688.8374.27740593.26170-0.664603.004901.98780HepG2DDX59
SNRNP40ENSG00000060688.8482.25930743.95270-0.625405.516404.13510HepG2DDX5
SNRNP40ENSG00000060688.8525.20810670.24600-0.351802.434901.77050HepG2DNAJC21
SNRNP40ENSG00000060688.8480.01950664.24050-0.468605.093904.25260HepG2DNAJC2
SNRNP40ENSG00000060688.8408.22880680.27530-0.736705.436603.89130HepG2AGO1
SNRNP40ENSG00000060688.8378.12280748.32480-0.9848010.494309.38590HepG2EIF2S1
SNRNP40ENSG00000060688.8819.076501271.46920-0.634406.603405.41090HepG2EIF4G1
SNRNP40ENSG00000060688.8824.898301217.96480-0.562205.490004.36410HepG2EIF4G2
SNRNP40ENSG00000060688.8999.077801572.13560-0.6541013.3746012.21660HepG2ETF1
SNRNP40ENSG00000060688.8515.02430704.00330-0.450903.453302.19690HepG2FASTKD2
SNRNP40ENSG00000060688.8706.60640929.58590-0.395702.205401.51430HepG2FIP1L1
SNRNP40ENSG00000060688.8378.26900532.94000-0.494603.415702.54610HepG2FUBP3
SNRNP40ENSG00000060688.8432.36930774.00820-0.840108.027206.92570HepG2G3BP1
SNRNP40ENSG00000060688.8633.24990821.59290-0.375602.249001.44920HepG2G3BP2
SNRNP40ENSG00000060688.8580.41260434.404500.417902.379501.55570HepG2GEMIN5
SNRNP40ENSG00000060688.8292.72770592.19560-1.016509.455008.31950HepG2GPKOW
SNRNP40ENSG00000060688.8495.40410780.85410-0.656403.356301.81080HepG2HLTF
SNRNP40ENSG00000060688.8697.148501184.38970-0.7646014.5082012.71510HepG2HNRNPA2B1
SNRNP40ENSG00000060688.8654.13220941.00930-0.524607.475906.37230HepG2HNRNPF
SNRNP40ENSG00000060688.8891.359001173.83660-0.397205.469804.54970HepG2HNRNPL
SNRNP40ENSG00000060688.8303.50080565.14510-0.896908.138207.12240HepG2HNRNPLL
SNRNP40ENSG00000060688.8553.72570747.66330-0.433203.427102.75970HepG2HNRNPU
SNRNP40ENSG00000060688.8670.46010926.61650-0.466804.852003.91870HepG2IGF2BP1
SNRNP40ENSG00000060688.8450.02910763.71830-0.7630012.6637011.22110HepG2ILF2
SNRNP40ENSG00000060688.81433.01430839.271500.771708.073907.04280HepG2MATR3
SNRNP40ENSG00000060688.8359.00490576.42040-0.683103.605202.48950HepG2MTPAP
SNRNP40ENSG00000060688.8430.24240631.68760-0.554104.710603.12890HepG2NAA15
SNRNP40ENSG00000060688.8956.473801277.84840-0.417904.508503.53690HepG2NOL12
SNRNP40ENSG00000060688.8332.69660501.12440-0.591003.755602.88590HepG2NSUN2
SNRNP40ENSG00000060688.8501.62150765.15450-0.609204.716503.78510HepG2PABPC4
SNRNP40ENSG00000060688.8446.73960655.98230-0.554203.868002.93280HepG2PRPF8
SNRNP40ENSG00000060688.8678.73110869.50060-0.357303.243902.66080HepG2PTBP1
SNRNP40ENSG00000060688.8895.422701219.85630-0.446104.105103.39520HepG2PUF60
SNRNP40ENSG00000060688.8975.663801294.97600-0.408505.178504.41910HepG2PUM1
SNRNP40ENSG00000060688.8951.207401294.00230-0.444004.712503.84860HepG2PUM2
SNRNP40ENSG00000060688.8656.67460941.66230-0.520005.692304.84320HepG2QKI
SNRNP40ENSG00000060688.8588.28130857.18830-0.543104.446503.38980HepG2RBM15
SNRNP40ENSG00000060688.8852.183401313.99970-0.6247010.471209.60670HepG2RBM22
SNRNP40ENSG00000060688.8490.87460854.62970-0.7999010.239109.00100HepG2RBM25
SNRNP40ENSG00000060688.81236.67680967.659600.353803.926403.30290HepG2NELFE
SNRNP40ENSG00000060688.8579.246201013.83190-0.8076010.826509.62700HepG2RPLP0
SNRNP40ENSG00000060688.8358.76290474.83740-0.404402.226301.66860HepG2RPS19
SNRNP40ENSG00000060688.8392.61700648.89460-0.724905.552904.47440HepG2RRP9
SNRNP40ENSG00000060688.8506.61050665.84430-0.394303.778003.04570HepG2SAFB2
SNRNP40ENSG00000060688.8350.74000476.45700-0.441902.517301.61880HepG2SERBP1
SNRNP40ENSG00000060688.81214.63240817.686800.570804.106303.27710HepG2SF3A3
SNRNP40ENSG00000060688.8732.083601169.74370-0.6761013.5734012.22170HepG2SLBP
SNRNP40ENSG00000060688.8557.17270758.85870-0.445702.320001.45150HepG2SMNDC1
SNRNP40ENSG00000060688.8400.90520622.40150-0.634603.335702.47340HepG2SNRNP70
SNRNP40ENSG00000060688.8943.945001484.08840-0.6528014.6649013.75300HepG2SRFBP1
SNRNP40ENSG00000060688.81116.86240944.882700.241102.019801.59810HepG2SRSF1
SNRNP40ENSG00000060688.8961.270101204.48390-0.325403.415202.73220HepG2SRSF5
SNRNP40ENSG00000060688.8609.92210924.54160-0.600109.394208.24320HepG2SRSF7
SNRNP40ENSG00000060688.8548.72630768.72080-0.486405.764305.01900HepG2SRSF9
SNRNP40ENSG00000060688.8973.465201288.49480-0.404505.854905.16180HepG2SSB
SNRNP40ENSG00000060688.8446.85710694.71640-0.636603.274901.96120HepG2SUB1
SNRNP40ENSG00000060688.8389.97440627.61490-0.686506.805205.37460HepG2SUPT6H
SNRNP40ENSG00000060688.8301.87050846.59650-1.4877021.1357019.57970HepG2SUPV3L1
SNRNP40ENSG00000060688.8705.15920849.32440-0.268402.070001.57200HepG2TAF15
SNRNP40ENSG00000060688.8381.36920550.89710-0.530603.582602.77050HepG2TARDBP
SNRNP40ENSG00000060688.8500.10160780.38480-0.642007.252405.91020HepG2TIA1
SNRNP40ENSG00000060688.8398.51020726.60300-0.866608.958808.15060HepG2TIAL1
SNRNP40ENSG00000060688.8517.97970732.98190-0.500905.978005.20510HepG2TRIM56
SNRNP40ENSG00000060688.8971.190101191.82080-0.295302.088901.33900HepG2TUFM
SNRNP40ENSG00000060688.8623.13050795.14320-0.351702.108301.55180HepG2U2AF1
SNRNP40ENSG00000060688.8838.192501261.57160-0.589904.630403.52770HepG2UBE2L3
SNRNP40ENSG00000060688.8306.74060500.09510-0.705205.482704.40780HepG2UCHL5
SNRNP40ENSG00000060688.8592.86810725.16110-0.290602.343301.69240HepG2UPF1
SNRNP40ENSG00000060688.81040.51580700.117700.571508.663207.69790HepG2UTP3
SNRNP40ENSG00000060688.8506.19960755.23490-0.577207.768206.73590HepG2ZC3H8
SNRNP40ENSG00000060688.8649.60250797.54130-0.296002.861902.30830HepG2ZNF622
SNRNP40ENSG00000060688.82585.967102150.783300.265703.497402.87230K562AGGF1
SNRNP40ENSG00000060688.82698.988802237.959000.270102.108601.53550K562AKAP8L
SNRNP40ENSG00000060688.81860.741602213.01870-0.250103.360402.29790K562BCLAF1
SNRNP40ENSG00000060688.81029.829601327.40130-0.366202.665701.80990K562BOP1
SNRNP40ENSG00000060688.8861.155501130.02970-0.392002.905501.82240K562CCAR1
SNRNP40ENSG00000060688.81076.963601411.36990-0.390103.859002.93290K562CPSF6
SNRNP40ENSG00000060688.81825.463302523.45530-0.467105.104503.08000K562DDX19B
SNRNP40ENSG00000060688.82980.163502408.382900.307204.032802.94870K562DKC1
SNRNP40ENSG00000060688.82356.833702890.13190-0.294303.990203.15140K562EIF2S2
SNRNP40ENSG00000060688.8992.086901436.11010-0.533605.360004.16360K562FMR1
SNRNP40ENSG00000060688.8817.988601217.26530-0.573505.183403.88980K562FTO
SNRNP40ENSG00000060688.82371.188301908.561900.313004.161703.44170K562FXR1
SNRNP40ENSG00000060688.8990.697801347.48010-0.443704.202503.22960K562GPKOW
SNRNP40ENSG00000060688.81346.365901893.36650-0.491906.070205.21920K562HNRNPC
SNRNP40ENSG00000060688.82532.362301984.351000.351702.741401.51440K562HNRNPK
SNRNP40ENSG00000060688.82501.685702925.36430-0.225702.267601.45870K562HNRNPU
SNRNP40ENSG00000060688.8694.473901150.66080-0.728506.045504.60530K562KRR1
SNRNP40ENSG00000060688.83493.899004856.03010-0.474905.577503.97510K562MSI2
SNRNP40ENSG00000060688.81951.295802226.10790-0.190102.050401.34930K562MTPAP
SNRNP40ENSG00000060688.82176.163502473.46710-0.184702.754802.00980K562NSUN2
SNRNP40ENSG00000060688.83320.316702524.639300.395102.974402.11980K562PPIG
SNRNP40ENSG00000060688.81285.567901697.64000-0.401103.887402.78770K562PSIP1
SNRNP40ENSG00000060688.84220.232105180.35410-0.295704.025502.86320K562PUM2
SNRNP40ENSG00000060688.82732.009402162.540800.337102.330501.77860K562RBM15
SNRNP40ENSG00000060688.8927.783501281.61380-0.466103.342602.27180K562SF3B1
SNRNP40ENSG00000060688.82531.947501988.782400.348303.806002.98310K562SRSF1
SNRNP40ENSG00000060688.81310.535601913.43190-0.546004.940303.54830K562SUPV3L1
SNRNP40ENSG00000060688.81473.229402012.78250-0.450204.320503.42920K562TARDBP
SNRNP40ENSG00000060688.81446.867602025.04190-0.485004.631703.28060K562UCHL5
SNRNP40ENSG00000060688.82242.902602622.66480-0.225702.105801.47210K562UPF1
SNRNP40ENSG00000060688.81854.673502244.13930-0.275002.435001.61170K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNRNP40 is not available on ENCORE database.





6 RBPs can affect the splicing of SNRNP40 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNRNP40ENSG00000060688.8chr1-317407173174077931734375317344793174200431742087-0.123000.000010.00025excludedHepG2U2AF2
SESNRNP40ENSG00000060688.8chr1-317407173174077931734375317344793174200431742513-0.065000.000000.00000excludedK562AQR
SESNRNP40ENSG00000060688.8chr1-317338013173402331732795317329683173437531734479-0.081000.000940.09974excludedK562DROSHA
SESNRNP40ENSG00000060688.8chr1-317407173174077931734375317344793174200431742087-0.052000.002560.08201excludedK562SF3B1
SESNRNP40ENSG00000060688.8chr1-3173380131734023317327953173296831734375317344790.311000.000000.00000includedHepG2HNRNPC
SESNRNP40ENSG00000060688.8chr1-3173380131734023317327953173296831734375317344790.778000.000000.00000includedK562HNRNPC
A3SSSNRNP40ENSG00000060688.8chr1-3173437531734617317343753173447931740717317407790.148000.000000.00000longerK562SF3B4
A3SSSNRNP40ENSG00000060688.8chr1-3174200431742144317420043174208731744225317444520.172000.000000.00000longerK562AQR
A3SSSNRNP40ENSG00000060688.8chr1-317343753173461731734375317344793174200431742126-0.421000.000260.00205shorterK562AQR
MXESNRNP40ENSG00000060688.8chr1-3173429631734479317407173174077931732520317329683174200431742087-0.077000.000000.000002includedK562AQR
MXESNRNP40ENSG00000060688.8chr1-31734375317344793174071731740779317325203173296831742004317420870.301000.000000.000001includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNRNP40 is not avaliable on ENCORE database.