SNRNP40

General Information

Gene Name : SNRNP40
Gene ID : ENSG00000060688.12
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SNRNP40)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SNRNP40	ENSG00000060688.12	61.67	64.13	62.90	ENCSR000AEF
HepG2	SNRNP40	ENSG00000060688.12	72.05	72.37	72.21	ENCSR985KAT
K562	SNRNP40	ENSG00000060688.12	106.08	104.26	105.17	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SNRNP40 is not avaliable on ENCORE database.

Proteins bound to RNA

SNRNP40 RNA is bound by 25 proteins.

CanvasJS.com

eCLIP assay for SNRNP40 is not avaliable on ENCORE database.

25 proteins are bound to SNRNP40 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	31732870	31732916	-	3'-UTR,intron-Distal	5.52462	24.08921	K562	LIN28B
chr1	31737563	31737653	-	intron-Distal	4.39833	22.27367	K562	QKI
chr1	31762196	31762276	-	CDS,intron-Distal,intron-Proximal	6.07525	21.70936	K562	U2AF2
chr1	31732565	31732605	-	3'-UTR,intron-Distal,intron-Proximal	4.92919	20.64401	K562	PABPC4
chr1	31734471	31734534	-	CDS,intron-Distal,intron-Proximal	5.77333	20.31933	K562	SF3B4
chr1	31762003	31762165	-	CDS,intron-Distal,intron-Proximal	3.03583	19.37681	K562	PRPF8
chr1	31744304	31744343	-	CDS,intron-Distal	4.50848	18.86748	K562	LIN28B
chr1	31762059	31762130	-	CDS,intron-Distal,intron-Proximal	4.19900	14.92191	HepG2	PRPF8
chr1	31744298	31744320	-	CDS,intron-Distal	4.19991	14.71595	K562	YBX3
chr1	31744343	31744347	-	CDS,intron-Distal,intron-Proximal	4.21465	14.42182	K562	LIN28B
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 58 entries

eCLIP assay for SNRNP40 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SNRNP40 is not available on ENCORE database.
98 RBPs can affect the levels of SNRNP40.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SNRNP40 is not available on ENCORE database.

98 RBPs can affect the gene expression of SNRNP40 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SNRNP40	ENSG00000060688.8	283.60980	709.39480	-1.32270	32.60810	30.55650	HepG2	DDX19B
SNRNP40	ENSG00000060688.8	301.87050	846.59650	-1.48770	21.13570	19.57970	HepG2	SUPV3L1
SNRNP40	ENSG00000060688.8	781.55050	1369.23520	-0.80900	19.01220	17.51210	HepG2	AUH
SNRNP40	ENSG00000060688.8	347.13630	850.45940	-1.29270	16.40070	14.73720	HepG2	DDX55
SNRNP40	ENSG00000060688.8	943.94500	1484.08840	-0.65280	14.66490	13.75300	HepG2	SRFBP1
SNRNP40	ENSG00000060688.8	697.14850	1184.38970	-0.76460	14.50820	12.71510	HepG2	HNRNPA2B1
SNRNP40	ENSG00000060688.8	732.08360	1169.74370	-0.67610	13.57340	12.22170	HepG2	SLBP
SNRNP40	ENSG00000060688.8	999.07780	1572.13560	-0.65410	13.37460	12.21660	HepG2	ETF1
SNRNP40	ENSG00000060688.8	450.02910	763.71830	-0.76300	12.66370	11.22110	HepG2	ILF2
SNRNP40	ENSG00000060688.8	579.24620	1013.83190	-0.80760	10.82650	9.62700	HepG2	RPLP0
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 113 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SNRNP40 is not available on ENCORE database.

6 RBPs can affect the splicing of SNRNP40 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SNRNP40	ENSG00000060688.8	chr1	-	31740717	31740779			31734375	31734479	31742004	31742513	-0.06500	0.00000	0.00000	excluded	K562	AQR
SE	SNRNP40	ENSG00000060688.8	chr1	-	31733801	31734023			31732795	31732968	31734375	31734479	0.31100	0.00000	0.00000	included	HepG2	HNRNPC
SE	SNRNP40	ENSG00000060688.8	chr1	-	31733801	31734023			31732795	31732968	31734375	31734479	0.77800	0.00000	0.00000	included	K562	HNRNPC
A3SS	SNRNP40	ENSG00000060688.8	chr1	-	31734375	31734617			31734375	31734479	31740717	31740779	0.14800	0.00000	0.00000	longer	K562	SF3B4
A3SS	SNRNP40	ENSG00000060688.8	chr1	-	31742004	31742144			31742004	31742087	31744225	31744452	0.17200	0.00000	0.00000	longer	K562	AQR
MXE	SNRNP40	ENSG00000060688.8	chr1	-	31734296	31734479	31740717	31740779	31732520	31732968	31742004	31742087	-0.07700	0.00000	0.00000	2included	K562	AQR
MXE	SNRNP40	ENSG00000060688.8	chr1	-	31734375	31734479	31740717	31740779	31732520	31732968	31742004	31742087	0.30100	0.00000	0.00000	1included	K562	HNRNPC
SE	SNRNP40	ENSG00000060688.8	chr1	-	31740717	31740779			31734375	31734479	31742004	31742087	-0.12300	0.00001	0.00025	excluded	HepG2	U2AF2
A3SS	SNRNP40	ENSG00000060688.8	chr1	-	31734375	31734617			31734375	31734479	31742004	31742126	-0.42100	0.00026	0.00205	shorter	K562	AQR
SE	SNRNP40	ENSG00000060688.8	chr1	-	31733801	31734023			31732795	31732968	31734375	31734479	-0.08100	0.00094	0.09974	excluded	K562	DROSHA

Showing 1 to 10 of 11 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SNRNP40

General Information

Functions

Localization

Domains (AlphaFold: SNRNP40)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SNRNP40 is not avaliable on ENCORE database.

25 proteins are bound to SNRNP40 RNA:

eCLIP assay for SNRNP40 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SNRNP40 is not available on ENCORE database.

98 RBPs can affect the gene expression of SNRNP40 :

The Knockdown/knockout RNA-Seq assay for SNRNP40 is not available on ENCORE database.

6 RBPs can affect the splicing of SNRNP40 :

The Knockdown/knockout RNA-Seq assay for SNRNP40 is not avaliable on ENCORE database.