SLC39A6

General Information

Gene Name       : SLC39A6
Gene ID             : ENSG00000141424.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC39A6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC39A6ENSG00000141424.1238.2835.0236.65ENCSR000AEF
HepG2SLC39A6ENSG00000141424.1239.4336.0737.75ENCSR985KAT
K562SLC39A6ENSG00000141424.1216.0016.0416.02ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC39A6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC39A6 RNA is bound by 5 proteins.  







eCLIP assay for SLC39A6 is not avaliable on ENCORE database.





5 proteins are bound to SLC39A6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr183368945233689510-3'-UTR,intron-Distal3.018045.60881HepG2LIN28B
chr183368938933689469-3'-UTR,intron-Distal3.852304.67754HepG2FUBP3
chr183370908233709123-5'-UTR,intron-Distal5.6472314.71283HepG2DDX3X
chr183370930933709331-5'-UTR,intron-Distal,intron-Proximal5.627467.49422HepG2DDX3X
chr183370920433709304-5'-UTR,intron-Distal,intron-Proximal4.118923.86664K562DDX3X
chr183370912333709209-5'-UTR,intron-Distal4.7362322.66486HepG2DDX3X
chr183370920933709291-5'-UTR,intron-Distal,intron-Proximal5.7815371.94916HepG2DDX3X
chr183369663633696740-CDS,intron-Distal,intron-Proximal3.977448.08603HepG2BCLAF1
chr183370656633706635-CDS,intron-Distal4.174243.52163HepG2IGF2BP1
chr183369421733694338-CDS,intron-Distal5.279838.78846HepG2IGF2BP1
chr183370622833706297-CDS,intron-Distal4.096107.10876HepG2LIN28B
chr183370663533706701-CDS,intron-Distal3.474974.01314HepG2IGF2BP1
chr183369414033694208-CDS,intron-Distal4.191803.98448HepG2IGF2BP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC39A6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC39A6 is not available on ENCORE database.

  • 106 RBPs can affect the levels of SLC39A6.  








The Knockdown/knockout RNA-Seq assay for SLC39A6 is not available on ENCORE database.





106 RBPs can affect the gene expression of SLC39A6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC39A6ENSG00000141424.8525.044701383.19070-1.3975053.9655052.11780HepG2ACO1
SLC39A6ENSG00000141424.81806.085301342.741300.427603.797302.65140HepG2ADAR
SLC39A6ENSG00000141424.82777.735502018.372500.460603.633203.03460HepG2AKAP1
SLC39A6ENSG00000141424.8898.546101389.71310-0.6291012.2367010.77920HepG2AKAP8L
SLC39A6ENSG00000141424.81301.672901670.05450-0.359502.554901.79890HepG2ASCC1
SLC39A6ENSG00000141424.82024.226701552.068800.383102.941601.67300HepG2BUD13
SLC39A6ENSG00000141424.82638.013501985.147600.410103.976303.07590HepG2CALR
SLC39A6ENSG00000141424.8738.004901382.91870-0.9060027.2723025.67640HepG2CKAP4
SLC39A6ENSG00000141424.8845.432101288.10540-0.607503.569402.69440HepG2CNOT7
SLC39A6ENSG00000141424.8937.766702868.63380-1.613107.292306.21790HepG2CPSF6
SLC39A6ENSG00000141424.82825.989001777.856300.6685014.8359013.57990HepG2CELF1
SLC39A6ENSG00000141424.81713.993901236.104000.471504.888904.01430HepG2DDX21
SLC39A6ENSG00000141424.81590.066301208.860400.395303.934602.83310HepG2DDX24
SLC39A6ENSG00000141424.82582.120101933.492700.417203.476502.78500HepG2DDX3X
SLC39A6ENSG00000141424.81611.484103257.49280-1.015402.352801.45160HepG2DDX59
SLC39A6ENSG00000141424.82329.740901777.368200.390303.464202.34220HepG2DDX5
SLC39A6ENSG00000141424.81260.082701660.80530-0.398402.629802.02740HepG2DDX6
SLC39A6ENSG00000141424.8947.074801323.34610-0.482607.209706.21360HepG2DKC1
SLC39A6ENSG00000141424.8975.525601340.13380-0.458108.320307.26540HepG2DNAJC2
SLC39A6ENSG00000141424.81578.814601137.627300.472703.138601.95100HepG2AGO1
SLC39A6ENSG00000141424.81194.509801596.67660-0.418703.207802.57160HepG2EIF2S1
SLC39A6ENSG00000141424.81429.089201052.713900.440903.760302.71640HepG2EIF3D
SLC39A6ENSG00000141424.83261.619701717.956200.9248010.324509.03930HepG2EIF4B
SLC39A6ENSG00000141424.82274.773801806.686700.332302.528901.74870HepG2EIF4G2
SLC39A6ENSG00000141424.83069.977402393.656700.358906.373505.52320HepG2ETF1
SLC39A6ENSG00000141424.81541.583901095.716300.492405.462104.36790HepG2FUBP3
SLC39A6ENSG00000141424.81257.600701703.67210-0.438006.819405.76180HepG2HNRNPF
SLC39A6ENSG00000141424.81109.341601677.63970-0.596708.823507.60120HepG2IGF2BP1
SLC39A6ENSG00000141424.82262.769101678.737800.430603.803803.02330HepG2IGF2BP2
SLC39A6ENSG00000141424.81156.749201540.68330-0.413507.790606.62640HepG2ILF2
SLC39A6ENSG00000141424.82341.891001790.833200.386902.750002.12050HepG2MATR3
SLC39A6ENSG00000141424.82325.488601693.161500.457703.842902.89380HepG2MSI2
SLC39A6ENSG00000141424.82331.675801895.825700.298402.909502.12790HepG2NOL12
SLC39A6ENSG00000141424.81884.170901478.743300.349503.440002.58710HepG2PRPF4
SLC39A6ENSG00000141424.81584.803701020.324000.635206.885005.67630HepG2PRPF8
SLC39A6ENSG00000141424.82299.490201920.941200.259403.779103.10930HepG2PUM1
SLC39A6ENSG00000141424.82558.718001919.593100.414505.254004.34380HepG2PUM2
SLC39A6ENSG00000141424.81203.503601408.87360-0.227302.369001.78770HepG2PUS1
SLC39A6ENSG00000141424.82366.308801450.806500.705704.505803.61770HepG2RAVER1
SLC39A6ENSG00000141424.83030.981802000.655000.5992013.4562012.48540HepG2RBM22
SLC39A6ENSG00000141424.81207.260501548.57970-0.359202.593901.63460HepG2RBM27
SLC39A6ENSG00000141424.81251.478001835.13660-0.552305.173604.27790HepG2RPLP0
SLC39A6ENSG00000141424.81387.692501024.307600.437904.516103.75080HepG2RPS19
SLC39A6ENSG00000141424.81368.019501009.324200.438603.229902.38930HepG2RRP9
SLC39A6ENSG00000141424.81298.246001028.098800.336502.451101.56460HepG2SERBP1
SLC39A6ENSG00000141424.82419.318301859.892900.379302.267901.65680HepG2SF3A3
SLC39A6ENSG00000141424.81423.284901684.23590-0.242902.582202.00670HepG2SF3B4
SLC39A6ENSG00000141424.85827.980103418.317000.769602.155801.46960HepG2SNRNP70
SLC39A6ENSG00000141424.82575.831902259.667800.188802.304201.83340HepG2SRFBP1
SLC39A6ENSG00000141424.82138.391901757.989400.282503.881603.34490HepG2SRSF1
SLC39A6ENSG00000141424.82192.324501786.665600.295103.721803.01630HepG2SRSF5
SLC39A6ENSG00000141424.81279.003701673.77020-0.388105.470404.54880HepG2SRSF7
SLC39A6ENSG00000141424.81933.873801430.228100.435108.150007.29250HepG2SRSF9
SLC39A6ENSG00000141424.81461.709801961.92950-0.424607.699906.92800HepG2SSB
SLC39A6ENSG00000141424.81828.838001580.181900.210701.847401.37190HepG2TAF15
SLC39A6ENSG00000141424.81085.233401465.60500-0.433505.070604.43580HepG2TIAL1
SLC39A6ENSG00000141424.82486.415001789.176400.474703.348102.66270HepG2U2AF1
SLC39A6ENSG00000141424.82362.710001871.106900.336502.075001.35590HepG2UBE2L3
SLC39A6ENSG00000141424.8749.454401205.66190-0.685904.506603.20750HepG2UPF2
SLC39A6ENSG00000141424.82389.235201592.469500.5852014.7169013.49940HepG2UTP3
SLC39A6ENSG00000141424.8657.758601296.00650-0.9784012.9162011.36690HepG2XRN2
SLC39A6ENSG00000141424.81912.962701459.362300.390407.233106.23170HepG2ZC3H8
SLC39A6ENSG00000141424.82265.281101814.068600.320406.147605.41570HepG2ZNF622
SLC39A6ENSG00000141424.8474.43690587.79000-0.309102.050301.54790K562AGGF1
SLC39A6ENSG00000141424.8469.05860611.62140-0.382902.359201.75470K562AKAP8L
SLC39A6ENSG00000141424.81300.81640834.483600.640404.626502.95580K562APOBEC3C
SLC39A6ENSG00000141424.81355.33230770.536400.8146010.243809.22460K562AQR
SLC39A6ENSG00000141424.81477.16900893.252600.725602.696701.83480K562BOP1
SLC39A6ENSG00000141424.8402.79700218.148700.884604.435203.04200K562CCAR1
SLC39A6ENSG00000141424.8412.02320238.278300.790005.154102.70670K562YBX3
SLC39A6ENSG00000141424.81777.620001162.625600.6125010.100908.29940K562CELF1
SLC39A6ENSG00000141424.8528.19580350.457000.591704.815203.38760K562DDX3X
SLC39A6ENSG00000141424.8990.98840832.152600.251902.082101.50390K562DDX47
SLC39A6ENSG00000141424.8401.43810244.208200.717004.941703.06390K562DHX30
SLC39A6ENSG00000141424.8399.29630234.587300.767205.632303.70650K562DNAJC21
SLC39A6ENSG00000141424.8439.77840248.663800.822503.318601.38300K562DNAJC2
SLC39A6ENSG00000141424.8266.20050403.81080-0.601203.207001.81880K562EEF2
SLC39A6ENSG00000141424.8638.21130221.898501.524006.243904.68640K562EIF3A
SLC39A6ENSG00000141424.8547.88740377.702500.536502.922602.10450K562EIF3G
SLC39A6ENSG00000141424.8523.13120813.29340-0.636603.583902.60870K562FIP1L1
SLC39A6ENSG00000141424.8827.12180380.742601.1192021.3090019.73710K562FXR1
SLC39A6ENSG00000141424.8636.09570399.632000.670504.500603.55360K562G3BP2
SLC39A6ENSG00000141424.8544.33730391.161100.476602.824001.38660K562GEMIN5
SLC39A6ENSG00000141424.8637.22020491.972600.373102.805901.65780K562GLRX3
SLC39A6ENSG00000141424.8711.69040470.866700.595805.929204.38650K562HNRNPA1
SLC39A6ENSG00000141424.8548.14740424.275400.369502.240301.69520K562HNRNPC
SLC39A6ENSG00000141424.8701.78400521.440100.428403.759202.71530K562HNRNPU
SLC39A6ENSG00000141424.8576.22460427.540700.430502.217901.32810K562IGF2BP2
SLC39A6ENSG00000141424.8338.72570220.272300.620703.583001.89680K562KHDRBS1
SLC39A6ENSG00000141424.8648.69110449.450400.529304.527503.44520K562MAGOH
SLC39A6ENSG00000141424.8795.83840448.557200.827109.363607.56380K562MATR3
SLC39A6ENSG00000141424.81001.44960727.139700.461704.232903.06810K562MBNL1
SLC39A6ENSG00000141424.8688.62990517.237300.412803.813702.87770K562MTPAP
SLC39A6ENSG00000141424.8523.42420365.622500.517503.823702.35950K562NCBP2
SLC39A6ENSG00000141424.81863.261101034.359900.8490014.2097011.25540K562NOL12
SLC39A6ENSG00000141424.81451.10590971.714400.578408.166405.94290K562PNPT1
SLC39A6ENSG00000141424.8622.52900457.313200.444903.398702.50410K562POLR2G
SLC39A6ENSG00000141424.8595.77720923.15170-0.631803.400302.47520K562PPIG
SLC39A6ENSG00000141424.8704.09390419.795800.746003.754001.56750K562PRPF6
SLC39A6ENSG00000141424.8803.44840379.670001.0814013.5820011.91070K562PRPF8
SLC39A6ENSG00000141424.8668.02920436.660100.613306.293205.32660K562PTBP1
SLC39A6ENSG00000141424.81875.889701031.839900.8623014.0210012.17240K562PUF60
SLC39A6ENSG00000141424.81915.334301097.366300.8035016.7246014.01140K562PUM1
SLC39A6ENSG00000141424.81283.883201075.362300.255602.490201.57800K562PUM2
SLC39A6ENSG00000141424.8863.07280606.566100.508703.731903.11490K562PUS1
SLC39A6ENSG00000141424.8611.67400381.343600.681603.530101.88970K562RAVER1
SLC39A6ENSG00000141424.8714.52020591.002700.273701.808401.31100K562RBM15
SLC39A6ENSG00000141424.8617.63430440.674500.486903.411302.18060K562NELFE
SLC39A6ENSG00000141424.8687.89450386.735100.830707.115605.79020K562RPS19
SLC39A6ENSG00000141424.8679.51940407.529800.737503.926302.62500K562SAFB
SLC39A6ENSG00000141424.81075.19990567.057800.9229018.5322016.57400K562SF3A3
SLC39A6ENSG00000141424.8345.33050240.285200.523102.813601.53970K562SLBP
SLC39A6ENSG00000141424.8849.27300428.058800.9883015.0402013.38590K562SRSF1
SLC39A6ENSG00000141424.81476.04740976.148500.596503.757002.26530K562STAU1
SLC39A6ENSG00000141424.8593.61210367.600000.691305.172903.74450K562SUPV3L1
SLC39A6ENSG00000141424.81159.72960458.720301.338006.759605.46660K562SYNCRIP
SLC39A6ENSG00000141424.8488.31070365.879000.416302.191901.36820K562TIAL1
SLC39A6ENSG00000141424.8630.61760388.567400.698506.320804.75580K562TRIM56
SLC39A6ENSG00000141424.8708.71580387.610500.870506.792704.93040K562U2AF1
SLC39A6ENSG00000141424.8556.68720400.239600.475903.800602.85860K562U2AF2
SLC39A6ENSG00000141424.8744.46550609.405800.288702.159201.51870K562UPF1
SLC39A6ENSG00000141424.81248.29050912.773800.451504.436502.79220K562WRN
SLC39A6ENSG00000141424.8731.38290487.701100.584505.466902.97950K562ZNF800
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC39A6 is not available on ENCORE database.





1 RBPs can affect the splicing of SLC39A6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSSLC39A6ENSG00000141424.8chr18-3369663633696766336966363369674233702014337022330.071000.011190.05820longerK562AQR
A3SSSLC39A6ENSG00000141424.8chr18-3369246333692574336924633369254433694059336944370.304000.000390.00296longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLC39A6 is not avaliable on ENCORE database.