SLC25A40

General Information

Gene Name       : SLC25A40
Gene ID             : ENSG00000075303.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC25A40)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC25A40ENSG00000075303.1222.6619.5421.10ENCSR000AEF
HepG2SLC25A40ENSG00000075303.123.939.556.74ENCSR985KAT
K562SLC25A40ENSG00000075303.1218.7617.9118.34ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC25A40 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC25A40 RNA is bound by 8 proteins.  







eCLIP assay for SLC25A40 is not avaliable on ENCORE database.





8 proteins are bound to SLC25A40 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr78748353387483626-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.998595.79432HepG2BCLAF1
chr78748355387483619-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.0824914.18396K562PUM2
chr78746515987465248-3'-UTR,intron-Distal3.4296216.07358K562PUM2
chr78746464487464693-3'-UTR,intron-Distal3.551515.00403K562IGF2BP1
chr78747626287476354-3'-UTR,CDS,intron-Distal,intron-Proximal5.197497.04013HepG2BCLAF1
chr78748560587485705-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.518594.95909K562BUD13
chr78746479987464910-3'-UTR,intron-Distal3.076464.61266K562IGF2BP1
chr78747919187479251-5'-UTR,CDS,intron-Distal,intron-Proximal3.520695.15500HepG2BCLAF1
chr78749533187495398-intron-Distal3.883363.50894K562SAFB2
chr78747109187471146-intron-Distal,intron-Proximal3.666843.02234K562KHSRP
chr78747834887478400-intron-Distal4.515646.27552K562KHSRP
chr78748362787483732-intron-Distal,intron-Proximal3.146523.96958K562KHSRP
chr78747079687470912-intron-Distal,intron-Proximal4.308433.02181K562PRPF8
chr78748812687488237-intron-Distal,intron-Proximal3.176793.96958K562KHSRP
chr78749878687498856-intron-Distal3.021023.17174K562SAFB
chr78747840087478461-intron-Distal3.853476.83037K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC25A40 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC25A40 is not available on ENCORE database.

  • 93 RBPs can affect the levels of SLC25A40.  








The Knockdown/knockout RNA-Seq assay for SLC25A40 is not available on ENCORE database.





93 RBPs can affect the gene expression of SLC25A40 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC25A40ENSG00000075303.8183.15910481.70300-1.3950024.0555022.66220HepG2ACO1
SLC25A40ENSG00000075303.8355.91560860.81730-1.2742015.1655014.02100HepG2AKAP1
SLC25A40ENSG00000075303.8339.56140484.01730-0.511404.375903.42660HepG2AKAP8L
SLC25A40ENSG00000075303.8339.25500712.26770-1.0700012.1684010.61430HepG2ASCC1
SLC25A40ENSG00000075303.8208.60720380.77290-0.868105.236503.94010HepG2BCCIP
SLC25A40ENSG00000075303.8226.76140325.35290-0.520802.599702.01740HepG2BOP1
SLC25A40ENSG00000075303.8339.66840676.69890-0.9944010.646109.21730HepG2CIRBP
SLC25A40ENSG00000075303.8305.85730481.65980-0.655207.142006.16470HepG2CKAP4
SLC25A40ENSG00000075303.8316.72690590.47610-0.8986012.5428011.36550HepG2CELF1
SLC25A40ENSG00000075303.8338.95190445.53450-0.394503.118802.23750HepG2DDX19B
SLC25A40ENSG00000075303.8237.27670376.39280-0.665704.489603.64780HepG2DDX21
SLC25A40ENSG00000075303.8432.73440824.62710-0.930309.994508.87180HepG2DDX3X
SLC25A40ENSG00000075303.8102.42540374.37650-1.8699018.6437016.90180HepG2DDX55
SLC25A40ENSG00000075303.8303.37000708.30280-1.2233013.3507012.11810HepG2DDX6
SLC25A40ENSG00000075303.8206.13610340.75050-0.725105.691704.71350HepG2DNAJC21
SLC25A40ENSG00000075303.8249.91960337.79200-0.434702.833802.17500HepG2DNAJC2
SLC25A40ENSG00000075303.8287.75700400.09740-0.475502.264601.42870HepG2EEF2
SLC25A40ENSG00000075303.8237.56950333.54520-0.489502.376801.35180HepG2EFTUD2
SLC25A40ENSG00000075303.8473.60370680.97710-0.523903.506402.84360HepG2EIF2S1
SLC25A40ENSG00000075303.8186.43790324.79250-0.800804.518303.38350HepG2EIF3D
SLC25A40ENSG00000075303.8460.71850752.59290-0.708005.546004.64210HepG2EIF4A3
SLC25A40ENSG00000075303.8426.02970732.69160-0.782305.368304.43190HepG2EIF4B
SLC25A40ENSG00000075303.8283.38090470.76450-0.732306.427805.15580HepG2EWSR1
SLC25A40ENSG00000075303.8236.62990470.52280-0.991607.326606.13800HepG2FIP1L1
SLC25A40ENSG00000075303.8464.06560759.23450-0.710206.242305.23030HepG2FXR1
SLC25A40ENSG00000075303.8411.64490704.35400-0.774906.729605.71190HepG2G3BP1
SLC25A40ENSG00000075303.8189.51390289.18650-0.609703.237402.25870HepG2GEMIN5
SLC25A40ENSG00000075303.8361.15890459.92570-0.348802.379901.46760HepG2HDGF
SLC25A40ENSG00000075303.8285.60340583.53950-1.0308015.3894013.54760HepG2HNRNPA2B1
SLC25A40ENSG00000075303.8234.89550382.67050-0.704104.557003.68150HepG2HNRNPC
SLC25A40ENSG00000075303.8327.14530713.09920-1.1242013.9441012.49660HepG2HNRNPK
SLC25A40ENSG00000075303.8370.46560578.46820-0.642908.076706.97940HepG2HNRNPL
SLC25A40ENSG00000075303.8468.28000323.152600.535103.208602.53680HepG2HNRNPLL
SLC25A40ENSG00000075303.8259.72020380.13920-0.549603.520402.84470HepG2HNRNPU
SLC25A40ENSG00000075303.8335.31380715.97920-1.0944012.6906011.36440HepG2IGF2BP2
SLC25A40ENSG00000075303.8338.52260606.31710-0.840803.594302.64750HepG2LARP4
SLC25A40ENSG00000075303.8522.47530759.49910-0.539703.864503.09060HepG2MAGOH
SLC25A40ENSG00000075303.8366.20300763.76620-1.0605010.990609.79370HepG2MATR3
SLC25A40ENSG00000075303.8179.77750339.92640-0.919004.302903.00540HepG2METAP2
SLC25A40ENSG00000075303.8207.13970380.75180-0.878207.336406.07810HepG2MSI2
SLC25A40ENSG00000075303.8350.18510781.77040-1.1586013.8165012.46710HepG2NCBP2
SLC25A40ENSG00000075303.8493.91140629.66240-0.350302.694301.94100HepG2NOL12
SLC25A40ENSG00000075303.8408.13490286.519500.510302.722501.97930HepG2NSUN2
SLC25A40ENSG00000075303.8408.41380696.27840-0.769606.827605.70160HepG2PABPC4
SLC25A40ENSG00000075303.8275.84340376.25180-0.447802.893802.02950HepG2PARN
SLC25A40ENSG00000075303.8363.11720613.95670-0.757708.082907.13540HepG2PCBP1
SLC25A40ENSG00000075303.8305.86390624.72650-1.0303016.2374015.12470HepG2PTBP1
SLC25A40ENSG00000075303.8439.16830601.04120-0.452703.359702.71160HepG2PUF60
SLC25A40ENSG00000075303.8284.19220638.00050-1.1667024.1652022.76560HepG2PUM1
SLC25A40ENSG00000075303.8245.33660463.11310-0.916604.783003.87050HepG2RAVER1
SLC25A40ENSG00000075303.8305.25550582.61580-0.932506.853106.12370HepG2RBM22
SLC25A40ENSG00000075303.8424.67620695.25840-0.711208.801207.93560HepG2NELFE
SLC25A40ENSG00000075303.8513.46780647.54280-0.334702.516901.92550HepG2RECQL
SLC25A40ENSG00000075303.8104.32060316.03610-1.5991016.8438015.51310HepG2RPS19
SLC25A40ENSG00000075303.8224.82950476.34480-1.083209.893008.46130HepG2RPS2
SLC25A40ENSG00000075303.8196.84240285.69870-0.537502.106401.41220HepG2RRP9
SLC25A40ENSG00000075303.8212.18060317.19350-0.580102.887201.92720HepG2SERBP1
SLC25A40ENSG00000075303.8245.23580562.36670-1.1973010.589509.20730HepG2SF3A3
SLC25A40ENSG00000075303.8454.46920650.41620-0.517205.080004.32010HepG2SF3B4
SLC25A40ENSG00000075303.8271.16340394.75590-0.541803.656302.93410HepG2SMN1
SLC25A40ENSG00000075303.8312.79020658.07120-1.073007.016206.31890HepG2SRFBP1
SLC25A40ENSG00000075303.8497.88360678.89560-0.447404.194803.64230HepG2SRSF1
SLC25A40ENSG00000075303.8378.14400593.40320-0.650107.742906.76480HepG2SRSF5
SLC25A40ENSG00000075303.8361.63040552.31940-0.611006.696705.90550HepG2SRSF9
SLC25A40ENSG00000075303.8804.29480571.410800.493102.260101.78610HepG2SSB
SLC25A40ENSG00000075303.8332.61120674.89500-1.0208018.7761017.38800HepG2SUCLG1
SLC25A40ENSG00000075303.8134.41880249.80330-0.894104.290003.08510HepG2TFIP11
SLC25A40ENSG00000075303.8200.67490369.31340-0.880007.874507.10980HepG2TIAL1
SLC25A40ENSG00000075303.8213.37310372.68230-0.804607.991107.11110HepG2TRIM56
SLC25A40ENSG00000075303.8270.77080402.46830-0.571803.076802.41660HepG2U2AF1
SLC25A40ENSG00000075303.8130.88940220.16200-0.750203.677502.80380HepG2UCHL5
SLC25A40ENSG00000075303.8357.16630498.73250-0.481704.244903.40900HepG2UPF1
SLC25A40ENSG00000075303.8363.48180512.63370-0.496004.243202.97810HepG2UTP18
SLC25A40ENSG00000075303.8233.26610481.50790-1.0456013.4576012.28520HepG2UTP3
SLC25A40ENSG00000075303.8363.66910509.21860-0.485702.329801.35820HepG2XRCC6
SLC25A40ENSG00000075303.8401.49170319.845600.327901.959301.37880HepG2ZC3H8
SLC25A40ENSG00000075303.8303.90530548.51150-0.8519012.5449011.59200HepG2ZNF622
SLC25A40ENSG00000075303.81008.156701843.42350-0.8707013.5980012.43810K562AQR
SLC25A40ENSG00000075303.8624.31340781.00430-0.323102.411701.43510K562CSTF2
SLC25A40ENSG00000075303.81106.382101556.82520-0.492807.357506.36390K562DDX47
SLC25A40ENSG00000075303.8401.49620549.31950-0.452302.668701.35110K562DNAJC21
SLC25A40ENSG00000075303.8561.12400851.47570-0.601605.106003.84650K562EFTUD2
SLC25A40ENSG00000075303.8780.659101040.62320-0.414704.464803.46450K562EIF3G
SLC25A40ENSG00000075303.8865.144101217.94030-0.493404.844903.75600K562EIF4A3
SLC25A40ENSG00000075303.8592.051601002.30940-0.759509.185907.54490K562FIP1L1
SLC25A40ENSG00000075303.8866.755201266.61030-0.547308.128107.15960K562FXR1
SLC25A40ENSG00000075303.82037.390101290.636900.658503.153202.38990K562G3BP2
SLC25A40ENSG00000075303.8625.56290853.64530-0.448502.861501.41210K562GEMIN5
SLC25A40ENSG00000075303.8640.79950921.34230-0.523904.851503.80280K562GPKOW
SLC25A40ENSG00000075303.8963.195601464.11800-0.604107.845006.56000K562GRSF1
SLC25A40ENSG00000075303.8464.65810831.89100-0.8402010.551209.44680K562HNRNPC
SLC25A40ENSG00000075303.81030.066001407.03050-0.449904.678703.26650K562HNRNPL
SLC25A40ENSG00000075303.8928.613201230.66600-0.406304.648603.48450K562HNRNPU
SLC25A40ENSG00000075303.81265.252301694.06670-0.421102.809701.96290K562MAGOH
SLC25A40ENSG00000075303.81253.477201825.95510-0.542707.346405.72550K562MBNL1
SLC25A40ENSG00000075303.8706.01080899.32240-0.349102.567301.72800K562METAP2
SLC25A40ENSG00000075303.8868.781401050.70000-0.274302.635701.84560K562MTPAP
SLC25A40ENSG00000075303.8865.585801137.80940-0.394503.086402.21380K562PPIG
SLC25A40ENSG00000075303.8549.43300828.57990-0.592704.773103.79140K562PRPF8
SLC25A40ENSG00000075303.81002.568601645.82390-0.715106.256205.29160K562PTBP1
SLC25A40ENSG00000075303.81463.054802228.35090-0.607007.832806.45220K562PUF60
SLC25A40ENSG00000075303.81797.022602370.09780-0.399305.258203.75190K562PUM1
SLC25A40ENSG00000075303.82302.907301523.175500.596306.747805.94280K562PUS1
SLC25A40ENSG00000075303.8861.607301578.64600-0.873607.475006.00500K562RBM22
SLC25A40ENSG00000075303.81132.681201661.15610-0.552403.967602.62830K562NELFE
SLC25A40ENSG00000075303.81007.996301311.11390-0.379303.201501.36670K562RECQL
SLC25A40ENSG00000075303.8362.19550844.11560-1.2207014.6833012.77670K562RPS19
SLC25A40ENSG00000075303.8648.04570947.00310-0.547304.262602.98970K562RPS3
SLC25A40ENSG00000075303.8653.808401151.95460-0.8171015.5365013.71950K562SF3A3
SLC25A40ENSG00000075303.81102.722701342.51950-0.283902.401601.60780K562SF3B4
SLC25A40ENSG00000075303.8598.624101613.35390-1.4303015.7663014.08510K562SRSF1
SLC25A40ENSG00000075303.8695.71300914.23740-0.394103.077201.95280K562SRSF4
SLC25A40ENSG00000075303.8783.845301633.03970-1.0589010.589509.05560K562TARDBP
SLC25A40ENSG00000075303.81206.304601575.19330-0.384902.383001.63050K562TIA1
SLC25A40ENSG00000075303.8486.38730717.40660-0.560704.094002.93890K562TIAL1
SLC25A40ENSG00000075303.8966.522401237.82880-0.356904.409203.52380K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC25A40 is not available on ENCORE database.





15 RBPs can affect the splicing of SLC25A40 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESLC25A40ENSG00000075303.8chr7-8747329187473368874730688747317887476263874764370.291000.000000.00000includedK562SRSF1
SESLC25A40ENSG00000075303.8chr7-874893868748948487487945874880668748988687489955-0.295000.000060.00197excludedK562SRSF1
SESLC25A40ENSG00000075303.8chr7-874835138748362587477167874772928748560687485666-0.057000.008020.06813excludedK562AQR
SESLC25A40ENSG00000075303.8chr7-874856068748570487483571874836258748794587488066-0.093000.000020.00049excludedK562PUS1
SESLC25A40ENSG00000075303.8chr7-874709478747102987466044874661258747626387476437-0.288000.000000.00008excludedK562PUS1
SESLC25A40ENSG00000075303.8chr7-874893868748948487487945874880668748988687489955-0.154000.000470.07964excludedK562APOBEC3C
SESLC25A40ENSG00000075303.8chr7-874856068748570487483571874836258748794587488066-0.074000.002640.05003excludedK562U2AF1
SESLC25A40ENSG00000075303.8chr7-874893868748948487487945874880668748988687489955-0.258000.000060.00212excludedK562U2AF1
SESLC25A40ENSG00000075303.8chr7-8747329187473368874730688747317887476263874764370.105000.000420.01243includedHepG2SRSF1
SESLC25A40ENSG00000075303.8chr7-874893868748948487487945874880668748988687489955-0.248000.000010.00057excludedHepG2SRSF1
SESLC25A40ENSG00000075303.8chr7-874730688747317887470947874710298747626387476437-0.233000.000120.00538excludedHepG2SF3A3
SESLC25A40ENSG00000075303.8chr7-8747329187473368874730688747317887476263874764370.054000.000520.06613includedK562RBM22
SESLC25A40ENSG00000075303.8chr7-874856068748570487483571874836258748794587488066-0.061000.001360.04303excludedK562UTP18
SESLC25A40ENSG00000075303.8chr7-874893868748948487487945874880668748988687489955-0.240000.000700.01484excludedK562U2AF2
SESLC25A40ENSG00000075303.8chr7-8747329187473368874730688747317887476263874764370.152000.000000.00000includedK562TARDBP
SESLC25A40ENSG00000075303.8chr7-8747329187473368874730688747317887476263874764370.262000.000010.00105includedHepG2HNRNPC
SESLC25A40ENSG00000075303.8chr7-8747329187473368874730688747317887476263874764370.061000.000120.00769includedK562PTBP1
SESLC25A40ENSG00000075303.8chr7-8747329187473368874730688747317887476263874764370.535000.000000.00000includedK562HNRNPC
SESLC25A40ENSG00000075303.8chr7-8748938687489484874879458748806687489886874899550.484000.000000.00011includedK562HNRNPC
A3SSSLC25A40ENSG00000075303.8chr7-8748560687485704874856068748566687487945874880660.122000.000030.00281longerK562U2AF1
MXESLC25A40ENSG00000075303.8chr7-87470947874710298747306887473178874660448746612587476263874764370.178000.000860.029751includedK562XRN2
MXESLC25A40ENSG00000075303.8chr7-87483518874836258748560687485666874791958747926387487945874880660.174000.000690.020331includedK562TARDBP
MXESLC25A40ENSG00000075303.8chr7-8747094787471029874730688747317887466044874661258747626387476437-0.059000.004640.060242includedK562HNRNPUL1
MXESLC25A40ENSG00000075303.8chr7-87470947874710298747306887473178874660448746612587476263874764370.189000.001060.066751includedK562SERBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLC25A40 is not avaliable on ENCORE database.