SHROOM1

General Information

Gene Name       : SHROOM1
Gene ID             : ENSG00000164403.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SHROOM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SHROOM1ENSG00000164403.140.331.130.73ENCSR000AEF
HepG2SHROOM1ENSG00000164403.1415.289.5412.41ENCSR985KAT
K562SHROOM1ENSG00000164403.1410.579.9310.25ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SHROOM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SHROOM1 RNA is bound by 20 proteins.  







eCLIP assay for SHROOM1 is not avaliable on ENCORE database.





20 proteins are bound to SHROOM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5132162121132162197-3'-UTR,intron-Distal3.334075.12435HepG2PRPF4
chr5132157898132157964-3'-UTR,intron-Distal,intron-Proximal3.264543.97821HepG2PABPN1
chr5132157871132157961-3'-UTR,intron-Distal,intron-Proximal3.406386.38589HepG2LSM11
chr5132161847132161932-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.787909.56916K562SF3B4
chr5132161784132161842-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.428715.74131HepG2PPIG
chr5132166236132166287-5'-UTR,intron-Distal4.853016.03362HepG2AQR
chr5132161904132161930-5'-UTR,intron-Distal,intron-Proximal4.246517.56784HepG2SF3B4
chr5132161888132161947-5'-UTR,intron-Distal,intron-Proximal4.376004.62947HepG2AQR
chr5132161875132161904-5'-UTR,intron-Distal,intron-Proximal3.247433.98346HepG2SF3B4
chr5132159192132159229-CDS,intron-Distal,intron-Proximal5.156365.58036HepG2EFTUD2
chr5132159194132159202-CDS,intron-Distal4.281183.82843HepG2PPIG
chr5132160859132160898-CDS,intron-Distal,intron-Proximal3.743863.05875K562RBM15
chr5132160821132160895-CDS,intron-Distal,intron-Proximal4.4447212.81328HepG2PRPF8
chr5132161570132161597-CDS,intron-Distal3.747313.34231K562RBM15
chr5132158628132158743-CDS,intron-Distal3.063435.16177HepG2SRSF1
chr5132160948132161003-CDS,intron-Distal5.045376.76175HepG2PPIG
chr5132161085132161153-CDS,intron-Distal3.145274.65333HepG2RBM15
chr5132160666132160717-CDS,intron-Distal,intron-Proximal3.9245811.72792HepG2PRPF8
chr5132161544132161651-CDS,intron-Distal3.834784.48818HepG2GRWD1
chr5132161551132161570-CDS,intron-Distal4.590623.81597K562RBM15
chr5132159404132159443-CDS,intron-Distal,intron-Proximal3.236684.24993HepG2PPIG
chr5132166112132166215-intron-Distal4.226554.41402K562DROSHA
chr5132166093132166266-intron-Distal3.2802216.86541HepG2NKRF
chr5132163475132163546-intron-Distal4.977345.79972HepG2RBFOX2
chr5132166143132166269-intron-Distal4.155647.76457HepG2GTF2F1
chr5132166124132166249-intron-Distal3.134449.69540HepG2RBFOX2
chr5132166113132166197-intron-Distal4.335215.19780K562NONO
chr5132166198132166272-intron-Distal3.8564512.73550HepG2PRPF4
chr5132165850132165965-intron-Distal4.507195.19780K562NONO
chr5132166111132166234-intron-Distal3.752223.06537K562RBFOX2
chr5132165418132165517-intron-Distal3.078204.32983K562NONO
chr5132165329132165418-intron-Distal4.294883.99137K562NONO
chr5132163822132163931-intron-Distal3.669418.71422HepG2QKI
chr5132166091132166239-intron-Distal3.814837.47754K562EFTUD2
chr5132166175132166236-intron-Distal4.544294.28193HepG2AQR
chr5132162597132162683-intron-Distal3.530414.12529K562GTF2F1
chr5132166113132166237-intron-Distal3.928266.74691HepG2DGCR8
chr5132165044132165126-intron-Distal4.280834.07750HepG2HNRNPK
chr5132166200132166256-intron-Distal5.9483127.02380HepG2EFTUD2
chr5132166092132166230-intron-Distal3.392567.26597K562PRPF8
chr5132166064132166124-intron-Distal4.419605.25173HepG2RBFOX2
chr5132162849132162937-intron-Distal4.5517610.86121HepG2PRPF4
chr5132166091132166200-intron-Distal4.1586229.36874HepG2EFTUD2
chr5132166103132166189-intron-Distal3.219383.42785HepG2HNRNPM
chr5132165749132165807-intron-Distal3.473487.76460HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SHROOM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SHROOM1 is not available on ENCORE database.

  • 112 RBPs can affect the levels of SHROOM1.  








The Knockdown/knockout RNA-Seq assay for SHROOM1 is not available on ENCORE database.





112 RBPs can affect the gene expression of SHROOM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SHROOM1ENSG00000164403.10536.11200683.74970-0.350903.177502.53220HepG2ACO1
SHROOM1ENSG00000164403.10351.26700555.34250-0.660804.111903.48090HepG2AKAP1
SHROOM1ENSG00000164403.101198.00500686.929600.8023017.0163015.33630HepG2AKAP8L
SHROOM1ENSG00000164403.10558.59890296.719400.912605.297204.09060HepG2BCLAF1
SHROOM1ENSG00000164403.10425.76480558.49710-0.391502.328401.77380HepG2BOP1
SHROOM1ENSG00000164403.10420.00100579.89030-0.465403.266202.43560HepG2CALR
SHROOM1ENSG00000164403.101006.39660683.561900.558009.384908.30260HepG2CKAP4
SHROOM1ENSG00000164403.10179.58600425.41710-1.244203.131802.31540HepG2CNOT7
SHROOM1ENSG00000164403.101045.13310749.118100.480304.227502.87670HepG2CPSF7
SHROOM1ENSG00000164403.10485.86800592.81960-0.287002.112601.45210HepG2DAZAP1
SHROOM1ENSG00000164403.10510.22770632.35250-0.309602.615601.80210HepG2DDX19B
SHROOM1ENSG00000164403.10638.56060457.025000.482502.212601.65420HepG2DDX6
SHROOM1ENSG00000164403.10533.60540654.15310-0.293902.087101.48620HepG2DKC1
SHROOM1ENSG00000164403.10500.46490351.519400.509604.218303.36530HepG2DNAJC21
SHROOM1ENSG00000164403.10768.47290348.404101.1411027.2646025.42110HepG2DNAJC2
SHROOM1ENSG00000164403.10554.73700367.877100.592504.156402.79400HepG2EFTUD2
SHROOM1ENSG00000164403.10646.59590439.276500.557603.811003.12240HepG2EIF2S1
SHROOM1ENSG00000164403.101147.94800690.087200.734107.331505.53920HepG2EIF2S2
SHROOM1ENSG00000164403.10793.02860472.688700.746405.126104.20880HepG2EIF4B
SHROOM1ENSG00000164403.10542.59370788.08120-0.538504.666803.28610HepG2ESF1
SHROOM1ENSG00000164403.101025.47700844.342600.280302.551601.97030HepG2ETF1
SHROOM1ENSG00000164403.10664.38880918.75870-0.467703.165802.34870HepG2FIP1L1
SHROOM1ENSG00000164403.10822.27730581.165200.500603.298802.60570HepG2GPKOW
SHROOM1ENSG00000164403.10494.99840652.76150-0.399103.870102.72850HepG2HDGF
SHROOM1ENSG00000164403.10651.56200354.886900.876409.497808.40630HepG2HNRNPA1
SHROOM1ENSG00000164403.10610.46750368.534600.728003.473801.75750HepG2HNRNPD
SHROOM1ENSG00000164403.10795.77420632.256600.331702.567701.87560HepG2HNRNPF
SHROOM1ENSG00000164403.10902.94470460.223500.9722012.3482010.97600HepG2HNRNPK
SHROOM1ENSG00000164403.10391.95720633.77430-0.693307.170905.74930HepG2HNRNPM
SHROOM1ENSG00000164403.10295.26740392.13280-0.409302.772902.16440HepG2HNRNPU
SHROOM1ENSG00000164403.10630.23690982.33860-0.640304.917003.29500HepG2HSPD1
SHROOM1ENSG00000164403.10930.77100622.584000.580106.239505.19620HepG2IGF2BP1
SHROOM1ENSG00000164403.10817.33370461.839300.823408.240207.13950HepG2IGF2BP2
SHROOM1ENSG00000164403.101022.19510464.568701.137605.095303.69690HepG2KHSRP
SHROOM1ENSG00000164403.10848.35730625.008600.440705.710704.25950HepG2KIF1C
SHROOM1ENSG00000164403.10671.71450981.64000-0.547303.360301.98100HepG2KRR1
SHROOM1ENSG00000164403.101018.13320647.618500.652604.941903.82050HepG2LARP4
SHROOM1ENSG00000164403.10803.50970490.043400.713306.315405.33300HepG2MAGOH
SHROOM1ENSG00000164403.10369.68470492.76880-0.414601.935101.40260HepG2MATR3
SHROOM1ENSG00000164403.10878.30900504.362200.800207.606206.58170HepG2NCBP2
SHROOM1ENSG00000164403.10467.22320587.83990-0.331302.168201.49140HepG2NOL12
SHROOM1ENSG00000164403.10849.19500308.676901.459904.152602.79500HepG2NONO
SHROOM1ENSG00000164403.10927.06630389.012201.2528010.742108.96250HepG2PABPC1
SHROOM1ENSG00000164403.101051.87560449.102801.2277018.2557016.45650HepG2PABPC4
SHROOM1ENSG00000164403.10290.25620388.14900-0.419302.709701.86960HepG2PARN
SHROOM1ENSG00000164403.10640.76860469.134200.449704.132503.41820HepG2PCBP1
SHROOM1ENSG00000164403.10610.06490408.948800.576903.121302.02130HepG2PCBP2
SHROOM1ENSG00000164403.10539.58060349.751800.625406.328905.24680HepG2PPIL4
SHROOM1ENSG00000164403.10533.42700645.42380-0.275001.965101.30530HepG2PRPF4
SHROOM1ENSG00000164403.10791.14350477.342600.7288010.122209.20420HepG2PTBP1
SHROOM1ENSG00000164403.10373.14590561.15090-0.588604.650103.90010HepG2PUF60
SHROOM1ENSG00000164403.10794.07240595.254100.415703.564102.80850HepG2PUM2
SHROOM1ENSG00000164403.101043.75000696.437700.583609.891908.84930HepG2PUS1
SHROOM1ENSG00000164403.10276.87720705.71660-1.3498024.4924023.25720HepG2RBM22
SHROOM1ENSG00000164403.10741.60890469.208400.660306.720805.71060HepG2RBM25
SHROOM1ENSG00000164403.10438.66120349.213800.328902.105901.53100HepG2SAFB2
SHROOM1ENSG00000164403.101406.52930809.218800.797407.108405.99170HepG2SF3A3
SHROOM1ENSG00000164403.10701.28720548.941900.353302.111601.48960HepG2SF3B1
SHROOM1ENSG00000164403.10984.83330497.009300.9865019.7755018.42820HepG2SF3B4
SHROOM1ENSG00000164403.10556.87210384.448000.534502.964701.32230HepG2SND1
SHROOM1ENSG00000164403.10359.28720610.80220-0.765604.148003.18220HepG2SNRNP70
SHROOM1ENSG00000164403.10399.10040797.08500-0.9980019.5486018.53350HepG2SRFBP1
SHROOM1ENSG00000164403.10295.02230518.75620-0.814209.128708.38090HepG2SRSF1
SHROOM1ENSG00000164403.10394.41290590.72730-0.582803.273902.17520HepG2SRSF3
SHROOM1ENSG00000164403.10429.38790554.06350-0.367802.660702.04380HepG2SRSF5
SHROOM1ENSG00000164403.10773.61530621.199600.316502.407601.75550HepG2SRSF7
SHROOM1ENSG00000164403.10522.52880422.023800.308102.059001.56820HepG2SRSF9
SHROOM1ENSG00000164403.10656.12390978.91570-0.577204.503802.89900HepG2SSRP1
SHROOM1ENSG00000164403.10613.62120372.275000.720902.962801.82050HepG2STIP1
SHROOM1ENSG00000164403.10535.60200334.305100.679902.358101.72740HepG2SUPV3L1
SHROOM1ENSG00000164403.10757.03620540.686300.485503.599402.78610HepG2TARDBP
SHROOM1ENSG00000164403.10597.98040381.044300.650005.444104.79060HepG2TIAL1
SHROOM1ENSG00000164403.10504.53240384.435500.392103.000402.41830HepG2TRIM56
SHROOM1ENSG00000164403.101207.68190785.821000.619905.907205.00590HepG2U2AF1
SHROOM1ENSG00000164403.101042.50750359.235101.537006.203904.66210HepG2U2AF2
SHROOM1ENSG00000164403.10320.04570197.434000.696802.738001.98180HepG2UCHL5
SHROOM1ENSG00000164403.10635.60730305.927201.054806.073204.54260HepG2UPF2
SHROOM1ENSG00000164403.10536.36960737.64520-0.459704.595903.28500HepG2UTP18
SHROOM1ENSG00000164403.10905.61140692.865900.386204.201403.48760HepG2UTP3
SHROOM1ENSG00000164403.10560.00730329.088900.766903.225102.44510HepG2XRN2
SHROOM1ENSG00000164403.10488.82550636.96930-0.381903.529302.78470HepG2ZC3H8
SHROOM1ENSG00000164403.101449.68570789.281200.8770025.9862024.73970HepG2ZNF622
SHROOM1ENSG00000164403.10377.40120550.91560-0.545703.494702.85090K562AQR
SHROOM1ENSG00000164403.101026.11400773.445800.407703.919102.48470K562CCDC124
SHROOM1ENSG00000164403.10329.54250464.53120-0.495303.318601.65520K562CEBPZ
SHROOM1ENSG00000164403.10355.60800599.15330-0.752604.026602.70280K562CNOT7
SHROOM1ENSG00000164403.10686.19860876.66370-0.353402.778701.80250K562CELF1
SHROOM1ENSG00000164403.10966.18500643.314700.586708.561307.49570K562DDX47
SHROOM1ENSG00000164403.10761.61690536.661600.505005.366104.41250K562EIF2S2
SHROOM1ENSG00000164403.10640.55380400.753200.676503.335502.22220K562EIF3A
SHROOM1ENSG00000164403.10450.21990265.172200.763605.099403.64130K562EIF3D
SHROOM1ENSG00000164403.10169.90780318.56820-0.906906.012904.23810K562FKBP4
SHROOM1ENSG00000164403.10394.47790290.001000.443802.672302.07600K562FXR1
SHROOM1ENSG00000164403.1058.62970134.63710-1.199404.857703.85990K562G3BP2
SHROOM1ENSG00000164403.10395.60430517.68930-0.388002.686001.56060K562GLRX3
SHROOM1ENSG00000164403.10571.57380715.11820-0.323201.964901.32200K562GRSF1
SHROOM1ENSG00000164403.10275.09000366.72570-0.414802.061201.53510K562HNRNPC
SHROOM1ENSG00000164403.10264.77810411.62900-0.636604.022802.21620K562ILF3
SHROOM1ENSG00000164403.10541.22170759.89930-0.489603.878702.54590K562MSI2
SHROOM1ENSG00000164403.10404.20780544.28680-0.429303.346602.46080K562MTPAP
SHROOM1ENSG00000164403.10488.54120604.72920-0.307802.386401.68900K562NSUN2
SHROOM1ENSG00000164403.10400.01610606.27100-0.599904.164703.14260K562PCBP3
SHROOM1ENSG00000164403.10325.10230465.00610-0.516403.784902.84220K562POLR2G
SHROOM1ENSG00000164403.10453.36670328.822500.463302.699501.80790K562PSIP1
SHROOM1ENSG00000164403.10332.25720232.999100.511903.114602.41500K562PTBP1
SHROOM1ENSG00000164403.10600.79670777.84920-0.372602.493101.72030K562PUF60
SHROOM1ENSG00000164403.10992.20960810.651100.291502.276401.40400K562PUM2
SHROOM1ENSG00000164403.10505.72980667.86480-0.401202.158901.66710K562PUS1
SHROOM1ENSG00000164403.10526.90000650.75010-0.304601.914801.40580K562RBM15
SHROOM1ENSG00000164403.10452.36280300.078100.592004.385603.13610K562RCC2
SHROOM1ENSG00000164403.10351.82110235.049800.581802.365701.37150K562NELFE
SHROOM1ENSG00000164403.10455.10540240.491700.920106.666705.03060K562RPS3
SHROOM1ENSG00000164403.10222.11690139.844000.667403.350902.40910K562SF3B4
SHROOM1ENSG00000164403.10316.61230433.93500-0.454802.568401.35650K562SLBP
SHROOM1ENSG00000164403.10430.87300284.458800.598903.902802.61920K562SRFBP1
SHROOM1ENSG00000164403.10358.03660232.138100.625003.657902.42270K562SRSF4
SHROOM1ENSG00000164403.10495.34900703.78370-0.506703.780802.17180K562SSRP1
SHROOM1ENSG00000164403.10466.56130643.71250-0.464302.868601.59020K562STAU1
SHROOM1ENSG00000164403.10388.32770222.983800.800206.656105.30180K562TIA1
SHROOM1ENSG00000164403.10337.48740218.893200.624503.639402.35600K562TRA2A
SHROOM1ENSG00000164403.10331.74090548.65940-0.725907.068205.62740K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SHROOM1 is not available on ENCORE database.





2 RBPs can affect the splicing of SHROOM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESHROOM1ENSG00000164403.10chr5-1321595411321601111321593141321594561321603061321605130.074000.001100.02918includedHepG2HNRNPK
A3SSSHROOM1ENSG00000164403.10chr5-1321607091321607851321607091321607651321608541321618740.078000.000090.01098longerHepG2SF3A3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SHROOM1 is not avaliable on ENCORE database.