S100PBP

General Information

Gene Name       : S100PBP
Gene ID             : ENSG00000116497.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: S100PBP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878S100PBPENSG00000116497.1732.5327.5230.02ENCSR000AEF
HepG2S100PBPENSG00000116497.1713.6415.4114.53ENCSR985KAT
K562S100PBPENSG00000116497.1721.2422.1021.67ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for S100PBP is not avaliable on ENCORE database.



Proteins bound to RNA
  • S100PBP RNA is bound by 22 proteins.  







eCLIP assay for S100PBP is not avaliable on ENCORE database.





22 proteins are bound to S100PBP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr13332164133321695+3'-UTR4.217503.81597K562RBM15
chr13329090133290950+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.971926.46902HepG2U2AF2
chr13329090033290953+3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.620976.56329K562U2AF2
chr13332244133322494+3'-UTR4.320054.97297K562TIA1
chr13332417533324249+3'-UTR4.778706.54425K562LIN28B
chr13328320133283286+5'-UTR,intron-Distal,intron-Proximal4.008213.39593HepG2PRPF4
chr13328332933283405+5'-UTR,intron-Distal,intron-Proximal3.750363.28544HepG2DGCR8
chr13328332033283438+5'-UTR,intron-Distal,intron-Proximal5.0695919.73208HepG2EFTUD2
chr13328334933283441+5'-UTR,intron-Distal,intron-Proximal4.170414.23759K562NONO
chr13328332133283394+5'-UTR,intron-Distal,intron-Proximal4.176724.35952HepG2PRPF4
chr13328339133283509+5'-UTR,intron-Distal,intron-Proximal3.293434.07440K562PRPF8
chr13328333933283413+5'-UTR,intron-Distal,intron-Proximal3.862393.37414K562CSTF2T
chr13328320033283312+5'-UTR,intron-Distal,intron-Proximal3.112904.95054HepG2NCBP2
chr13332148133321559+CDS,intron-Proximal4.442345.97994K562AQR
chr13329204033292073+CDS3.950303.36385K562UCHL5
chr13329186233291971+CDS4.584684.67689HepG2PPIG
chr13329562733295818+CDS,intron-Distal,intron-Proximal3.182776.82400K562PRPF8
chr13329360933293684+CDS,intron-Proximal3.313733.32039HepG2PPIG
chr13329193233292027+CDS4.364644.23351K562BUD13
chr13329199633292038+CDS3.7991710.81363K562YBX3
chr13329556433295681+CDS,intron-Proximal4.153199.05280HepG2GRWD1
chr13329188633291970+CDS3.564615.91739K562UCHL5
chr13329189033291932+CDS4.255564.10264K562ZNF622
chr13329556433295669+CDS,intron-Proximal3.079728.54654K562ZNF622
chr13331862633318709+CDS,intron-Proximal4.437686.59856K562SF3B4
chr13329215933292204+CDS3.661853.02250K562YBX3
chr13329177033292026+CDS3.8996920.41143HepG2BCLAF1
chr13329566633295715+CDS,intron-Proximal5.560868.83608K562AQR
chr13329177833291845+CDS3.486333.04831K562RBM15
chr13332152033321606+CDS,intron-Proximal3.040604.12887HepG2GRWD1
chr13331876633318777+CDS,intron-Proximal5.346026.75320K562AQR
chr13329234133292427+CDS3.630116.67313HepG2BCLAF1
chr13331819533318327+intron-Distal3.544819.73065HepG2QKI
chr13328373033283784+intron-Distal5.326886.68817HepG2EFTUD2
chr13328922633289298+intron-Distal4.494773.80778HepG2QKI
chr13329897933299029+intron-Distal3.986573.60940HepG2HNRNPC
chr13329369933293790+intron-Distal,intron-Proximal4.527314.13847K562AQR
chr13331877733318809+intron-Proximal5.469217.28294K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for S100PBP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for S100PBP is not available on ENCORE database.

  • 93 RBPs can affect the levels of S100PBP.  








The Knockdown/knockout RNA-Seq assay for S100PBP is not available on ENCORE database.





93 RBPs can affect the gene expression of S100PBP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
S100PBPENSG00000116497.13402.51820638.66900-0.666005.794504.96720HepG2BOP1
S100PBPENSG00000116497.13408.99100587.85380-0.523403.857302.41420HepG2BUD13
S100PBPENSG00000116497.13531.07050689.02550-0.375702.160701.56210HepG2CKAP4
S100PBPENSG00000116497.13406.50280586.33960-0.528503.615902.84050HepG2CPSF6
S100PBPENSG00000116497.13754.42270939.98050-0.317302.817002.16900HepG2CELF1
S100PBPENSG00000116497.13768.114301010.67230-0.395905.136004.17230HepG2DAZAP1
S100PBPENSG00000116497.13457.55450637.31740-0.478103.429702.51250HepG2DDX19B
S100PBPENSG00000116497.13416.45450651.74770-0.646203.908603.00470HepG2DDX55
S100PBPENSG00000116497.13441.37860607.40910-0.460704.936304.10480HepG2DNAJC2
S100PBPENSG00000116497.13354.81680557.47020-0.651804.517703.36590HepG2EEF2
S100PBPENSG00000116497.13279.79150464.74450-0.732105.518203.94840HepG2EFTUD2
S100PBPENSG00000116497.13596.99480955.17380-0.678007.024005.75080HepG2EIF4G2
S100PBPENSG00000116497.13594.69810792.27710-0.413802.322101.61290HepG2FIP1L1
S100PBPENSG00000116497.13413.33560684.77210-0.728304.903503.44090HepG2FUS
S100PBPENSG00000116497.13286.30600402.93680-0.493002.839401.92890HepG2GEMIN5
S100PBPENSG00000116497.13381.64480664.68010-0.800406.649705.68610HepG2GPKOW
S100PBPENSG00000116497.13427.83170618.69500-0.532204.083103.32120HepG2HNRNPA1
S100PBPENSG00000116497.13764.82070928.85490-0.280302.206801.36250HepG2HNRNPA2B1
S100PBPENSG00000116497.13443.15440688.18260-0.635005.515704.56370HepG2HNRNPC
S100PBPENSG00000116497.13515.73120652.43270-0.339202.472601.79230HepG2HNRNPF
S100PBPENSG00000116497.13427.76870629.57420-0.557504.003803.17780HepG2HNRNPK
S100PBPENSG00000116497.13599.89900920.63370-0.6179010.373309.14550HepG2HNRNPL
S100PBPENSG00000116497.13440.34330683.63290-0.634608.112807.11430HepG2HNRNPU
S100PBPENSG00000116497.13469.58210642.46620-0.452203.394702.59890HepG2IGF2BP1
S100PBPENSG00000116497.13386.55570632.14240-0.709605.591304.66300HepG2IGF2BP2
S100PBPENSG00000116497.13548.45450698.30860-0.348503.777002.93350HepG2ILF2
S100PBPENSG00000116497.13582.40790962.44970-0.724705.842704.62650HepG2LARP4
S100PBPENSG00000116497.13452.63970650.04330-0.522203.817602.47970HepG2LARP7
S100PBPENSG00000116497.13482.77850682.66150-0.499803.462602.09630HepG2LIN28B
S100PBPENSG00000116497.13448.26920652.23640-0.541003.722201.74270HepG2LSM11
S100PBPENSG00000116497.13378.85890550.55490-0.539203.502801.69490HepG2MARK2
S100PBPENSG00000116497.13233.32520473.63590-1.021405.499304.05530HepG2METAP2
S100PBPENSG00000116497.13425.08870587.78990-0.467503.012701.54040HepG2NIP7
S100PBPENSG00000116497.13527.13770676.68100-0.360303.026202.14400HepG2PARN
S100PBPENSG00000116497.13480.91830609.74610-0.342402.521901.81490HepG2PPIL4
S100PBPENSG00000116497.13308.91380502.90170-0.703104.518803.51340HepG2PRPF8
S100PBPENSG00000116497.13798.54060647.229400.303002.631702.09620HepG2PTBP1
S100PBPENSG00000116497.13437.90620956.68140-1.1274018.8103017.43830HepG2PUF60
S100PBPENSG00000116497.13538.425201015.57170-0.9155022.5811021.22180HepG2PUM1
S100PBPENSG00000116497.13478.001001014.82230-1.0861020.3777018.65870HepG2PUM2
S100PBPENSG00000116497.131198.26530700.992100.7734012.6697011.47460HepG2QKI
S100PBPENSG00000116497.13383.38700625.61270-0.706503.415602.63430HepG2RAVER1
S100PBPENSG00000116497.13791.242001067.47520-0.432004.887604.24800HepG2RBM22
S100PBPENSG00000116497.13995.88780636.185300.646407.592006.52230HepG2RBM25
S100PBPENSG00000116497.13552.03670783.83160-0.505803.362802.26280HepG2RBM27
S100PBPENSG00000116497.13814.15610670.856300.279202.119301.57090HepG2RECQL
S100PBPENSG00000116497.13437.34680702.73580-0.684206.258405.28910HepG2RPLP0
S100PBPENSG00000116497.13242.67160440.34460-0.859607.667006.70400HepG2RPS19
S100PBPENSG00000116497.13258.78480497.48680-0.942906.929605.74870HepG2RRP9
S100PBPENSG00000116497.13473.97340608.80600-0.361202.937902.27880HepG2SAFB2
S100PBPENSG00000116497.13516.81240706.19470-0.450402.193301.59200HepG2SF3A3
S100PBPENSG00000116497.13487.57400627.85700-0.364802.123601.49970HepG2SF3B1
S100PBPENSG00000116497.13688.05190917.33320-0.414905.030304.12910HepG2SLBP
S100PBPENSG00000116497.13524.23310709.97180-0.437604.879104.06420HepG2SMN1
S100PBPENSG00000116497.13755.01270944.59800-0.323202.999202.34960HepG2SRSF5
S100PBPENSG00000116497.13425.89450640.97180-0.589806.247305.26890HepG2SRSF7
S100PBPENSG00000116497.13874.873201046.77280-0.258802.385601.90200HepG2SSB
S100PBPENSG00000116497.13416.86960534.98140-0.359902.282901.42370HepG2SUPT6H
S100PBPENSG00000116497.13471.71930648.84280-0.459902.219101.60450HepG2SUPV3L1
S100PBPENSG00000116497.13838.28200632.188400.407003.777603.13930HepG2TAF15
S100PBPENSG00000116497.13271.11540434.91970-0.681804.005902.83250HepG2TFIP11
S100PBPENSG00000116497.13421.95360664.28140-0.654707.114606.38060HepG2TIAL1
S100PBPENSG00000116497.13424.98290670.21500-0.657208.727407.81380HepG2TRIM56
S100PBPENSG00000116497.13712.46120934.65700-0.391603.145102.20920HepG2TUFM
S100PBPENSG00000116497.13693.65750989.33270-0.512203.309102.39540HepG2UBE2L3
S100PBPENSG00000116497.13348.73170626.28900-0.8447012.5052011.21710HepG2UPF1
S100PBPENSG00000116497.13456.64330643.72090-0.495404.834203.48910HepG2UTP18
S100PBPENSG00000116497.13398.44750604.65400-0.601706.471205.61880HepG2UTP3
S100PBPENSG00000116497.13506.54520688.79480-0.443404.444603.79410HepG2ZNF622
S100PBPENSG00000116497.131360.755201999.42600-0.555206.780505.92770K562AQR
S100PBPENSG00000116497.131653.844502042.42710-0.304503.049101.80320K562CCDC124
S100PBPENSG00000116497.131227.188901783.40450-0.539309.316707.29450K562CPEB4
S100PBPENSG00000116497.13895.600401138.19510-0.345803.517002.00810K562DDX27
S100PBPENSG00000116497.13875.724401112.03250-0.344702.904201.83620K562DDX3X
S100PBPENSG00000116497.131492.763201845.32080-0.305904.056103.28780K562DDX47
S100PBPENSG00000116497.13662.045601040.45930-0.652206.369204.93810K562EFTUD2
S100PBPENSG00000116497.13390.60370569.06850-0.542902.296401.38860K562EIF3A
S100PBPENSG00000116497.13677.622601147.33710-0.7597013.1977011.42620K562EIF3G
S100PBPENSG00000116497.132054.206802440.35990-0.248502.921401.95690K562EIF4G2
S100PBPENSG00000116497.131046.427701380.57400-0.399803.434102.48080K562FIP1L1
S100PBPENSG00000116497.13755.968501014.31370-0.424104.430802.68210K562FUS
S100PBPENSG00000116497.13898.505801208.20370-0.427305.254504.45820K562FXR1
S100PBPENSG00000116497.131409.233501831.73440-0.378303.776602.89770K562GRSF1
S100PBPENSG00000116497.13757.960701124.66650-0.569306.264605.40150K562HNRNPC
S100PBPENSG00000116497.13963.148201410.83840-0.550704.365502.95560K562IGF2BP2
S100PBPENSG00000116497.131218.019701483.27050-0.284202.301901.53120K562MAGOH
S100PBPENSG00000116497.132037.016602601.13110-0.352703.285202.04880K562MSI2
S100PBPENSG00000116497.13873.044401160.13230-0.410204.101102.58730K562NCBP2
S100PBPENSG00000116497.131271.571701567.22850-0.301602.196301.46880K562PPIG
S100PBPENSG00000116497.13609.897701012.48310-0.731307.625806.37430K562PRPF8
S100PBPENSG00000116497.13753.471501008.35570-0.420403.235802.24560K562PSIP1
S100PBPENSG00000116497.131967.192702662.57660-0.436704.748503.68170K562PUF60
S100PBPENSG00000116497.132136.128202774.85430-0.377406.056104.61950K562PUM2
S100PBPENSG00000116497.131437.921801763.70480-0.294602.346401.83790K562PUS1
S100PBPENSG00000116497.131048.264801454.35750-0.472404.284702.88750K562NELFE
S100PBPENSG00000116497.13589.337201031.43000-0.807508.016406.61290K562RPS19
S100PBPENSG00000116497.13791.773701146.60310-0.534204.493903.17960K562RPS3
S100PBPENSG00000116497.131204.569601442.94280-0.260502.353801.59620K562SF3A3
S100PBPENSG00000116497.131031.949301320.93340-0.356203.487602.52310K562SF3B4
S100PBPENSG00000116497.13664.21820872.02530-0.392702.777501.75060K562SRFBP1
S100PBPENSG00000116497.13863.279601106.80380-0.358502.873601.79590K562SRSF4
S100PBPENSG00000116497.131020.165001333.99260-0.386903.169502.03230K562SRSF5
S100PBPENSG00000116497.13901.428401429.82300-0.665607.790506.52860K562TARDBP
S100PBPENSG00000116497.131079.920201379.19170-0.352903.056102.18770K562TIA1
S100PBPENSG00000116497.131070.637101353.09100-0.337802.585701.53470K562TRA2A
S100PBPENSG00000116497.13793.204301030.23900-0.377202.799001.84610K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for S100PBP is not available on ENCORE database.





3 RBPs can affect the splicing of S100PBP :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSS100PBPENSG00000116497.13chr1+332935933329368233293596332936823329169833292531-0.314000.000030.00425shorterK562AGGF1
A3SSS100PBPENSG00000116497.13chr1+3332149233321557333215243332155733318679333187670.056000.002400.01515longerK562AQR
A3SSS100PBPENSG00000116497.13chr1+3329359333293682332935963329368233291698332925310.353000.001520.05667longerHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for S100PBP is not avaliable on ENCORE database.