RQCD1

General Information

Gene Name       : RQCD1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RQCD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RQCD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RQCD1 RNA is bound by 23 proteins.  







eCLIP assay for RQCD1 is not avaliable on ENCORE database.





23 proteins are bound to RQCD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2219445211219445338+3'-UTR,CDS,intron-Proximal3.963796.19659HepG2AQR
chr2219447695219447812+3'-UTR,CDS,intron-Proximal3.292945.28940K562IGF2BP1
chr2219445283219445303+3'-UTR,CDS,intron-Proximal3.923983.53770HepG2DDX3X
chr2219460610219460690+3'-UTR4.146697.71860K562UPF1
chr2219460289219460338+3'-UTR4.315494.78313HepG2UPF1
chr2219460152219460201+3'-UTR3.696484.89200K562ZC3H11A
chr2219459958219459997+3'-UTR3.056733.55461K562UPF1
chr2219447710219447791+3'-UTR,CDS3.560283.38325HepG2IGF2BP1
chr2219459605219459687+3'-UTR4.397794.44583HepG2UPF1
chr2219461051219461124+3'-UTR,intron-Proximal4.2374611.39836K562UPF1
chr2219445397219445460+3'-UTR,CDS4.155755.24452HepG2PPIG
chr2219445217219445316+3'-UTR,CDS,intron-Proximal5.628629.95272K562AQR
chr2219460959219461009+3'-UTR4.024353.05716HepG2PABPN1
chr2219460624219460698+3'-UTR4.523014.78313HepG2UPF1
chr2219459490219459541+3'-UTR4.045375.61622K562UPF1
chr2219460151219460208+3'-UTR3.0869810.63537K562UPF1
chr2219461084219461123+3'-UTR3.582583.80864K562FAM120A
chr2219460909219460940+3'-UTR3.876855.15345K562UPF1
chr2219447693219447710+3'-UTR,CDS,intron-Proximal4.275089.98780K562PUM2
chr2219460583219460663+3'-UTR4.465243.72506HepG2PABPN1
chr2219445331219445409+3'-UTR,CDS5.188887.01146K562DDX3X
chr2219445259219445319+3'-UTR,CDS,intron-Proximal3.696987.62584HepG2BUD13
chr2219447710219447767+3'-UTR,CDS4.3366315.01495K562PUM2
chr2219445440219445500+3'-UTR,CDS,intron-Proximal6.0126117.51077HepG2PRPF8
chr2219445269219445336+3'-UTR,CDS,intron-Proximal3.220673.80334HepG2U2AF2
chr2219433593219433689+5'-UTR,CDS5.958409.35430HepG2EFTUD2
chr2219433608219433731+5'-UTR,CDS,intron-Proximal3.633984.25142K562BUD13
chr2219433540219433668+5'-UTR3.5797813.27875HepG2DDX3X
chr2219433552219433703+5'-UTR,CDS,intron-Proximal3.8754414.94351K562DDX3X
chr2219433603219433711+5'-UTR,CDS,intron-Proximal3.641494.96115HepG2SRSF1
chr2219433593219433699+5'-UTR,CDS3.2078912.24834HepG2NCBP2
chr2219433478219433569+5'-UTR4.429124.13881HepG2PRPF4
chr2219433603219433726+5'-UTR,CDS,intron-Proximal3.046839.65732HepG2PPIG
chr2219433700219433741+CDS,intron-Proximal4.861726.38747HepG2AQR
chr2219457106219457167+CDS,intron-Proximal4.712335.93840HepG2PRPF8
chr2219457402219457430+CDS3.753703.02850K562YBX3
chr2219433697219433744+CDS,intron-Proximal4.2401619.21824HepG2PRPF8
chr2219457121219457163+CDS,intron-Proximal4.285724.27476HepG2AQR
chr2219452360219452421+CDS,intron-Proximal3.314726.20035HepG2BCLAF1
chr2219457023219457083+CDS,intron-Proximal3.268755.30777HepG2PPIG
chr2219458788219458855+CDS,intron-Distal,intron-Proximal4.521533.59236HepG2AQR
chr2219458238219458293+CDS,intron-Distal,intron-Proximal3.630926.17334HepG2U2AF2
chr2219447948219448068+intron-Distal3.667955.58816K562PRPF8
chr2219434512219434619+intron-Distal3.098865.60662HepG2PCBP2
chr2219434537219434635+intron-Distal3.635804.75362K562PTBP1
chr2219457865219457921+intron-Distal4.767516.18899HepG2KHSRP
chr2219449814219449863+intron-Distal3.833343.09122HepG2PTBP1
chr2219434538219434667+intron-Distal5.9573012.28789HepG2PTBP1
chr2219434548219434654+intron-Distal3.137623.45178K562MATR3
chr2219457614219457700+intron-Distal4.773206.46110HepG2KHSRP
chr2219457162219457299+intron-Distal,intron-Proximal3.831698.28561HepG2QKI
chr2219445136219445243+intron-Distal,intron-Proximal3.723513.24603K562KHSRP
chr2219434391219434449+intron-Distal3.560063.35585HepG2QKI
chr2219433772219433849+intron-Distal,intron-Proximal3.495628.04897K562PRPF8
chr2219433701219433777+intron-Proximal6.2994715.35700K562AQR
chr2219457430219457530+intron-Proximal3.699635.70278K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RQCD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RQCD1 is not available on ENCORE database.

  • 83 RBPs can affect the levels of RQCD1.  








The Knockdown/knockout RNA-Seq assay for RQCD1 is not available on ENCORE database.





83 RBPs can affect the gene expression of RQCD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RQCD1ENSG00000144580.9980.134301493.62200-0.607807.480505.81700HepG2AATF
RQCD1ENSG00000144580.91329.996302505.16970-0.9135011.7479010.72450HepG2AKAP1
RQCD1ENSG00000144580.91543.669401782.96350-0.207902.083001.40410HepG2AKAP8L
RQCD1ENSG00000144580.91467.668502783.91270-0.9236033.2065031.30070HepG2AUH
RQCD1ENSG00000144580.91094.684401708.56510-0.642306.406405.10100HepG2BCLAF1
RQCD1ENSG00000144580.91248.055401982.12210-0.667403.679002.89710HepG2CPSF6
RQCD1ENSG00000144580.91230.493202517.73610-1.0329036.3277034.53810HepG2CELF1
RQCD1ENSG00000144580.92102.100802707.30570-0.365008.238607.06290HepG2DAZAP1
RQCD1ENSG00000144580.91161.683301648.10780-0.504605.666504.73170HepG2DDX21
RQCD1ENSG00000144580.91293.546601612.64300-0.318102.879201.94530HepG2DDX24
RQCD1ENSG00000144580.91012.222001464.54260-0.532904.798803.00400HepG2DDX28
RQCD1ENSG00000144580.91062.274601933.32800-0.8639010.552509.15920HepG2DDX55
RQCD1ENSG00000144580.91299.535302250.82500-0.792505.311403.97010HepG2DDX59
RQCD1ENSG00000144580.91571.057102042.09660-0.378303.224402.13980HepG2DDX5
RQCD1ENSG00000144580.91404.453901697.96980-0.273802.883002.19210HepG2DKC1
RQCD1ENSG00000144580.91291.036701588.98170-0.299603.255602.49760HepG2DNAJC21
RQCD1ENSG00000144580.91251.552501574.76110-0.331404.053603.29510HepG2DNAJC2
RQCD1ENSG00000144580.9956.180901517.53310-0.666405.685404.10720HepG2AGO1
RQCD1ENSG00000144580.91179.961701981.81710-0.748109.240608.19550HepG2EIF2S1
RQCD1ENSG00000144580.91282.750801556.26670-0.278802.327401.33460HepG2EIF3G
RQCD1ENSG00000144580.92124.303102670.81880-0.330305.464704.35510HepG2EIF4G1
RQCD1ENSG00000144580.92110.582102558.49220-0.277702.156301.43040HepG2EIF4G2
RQCD1ENSG00000144580.9845.723101066.10420-0.334102.976401.75670HepG2FAM120A
RQCD1ENSG00000144580.91161.842201609.19110-0.469903.796202.31840HepG2FKBP4
RQCD1ENSG00000144580.91074.070601312.69910-0.289402.106101.41240HepG2FUBP3
RQCD1ENSG00000144580.91589.617402049.84200-0.366802.528001.89050HepG2G3BP1
RQCD1ENSG00000144580.91744.436902247.05740-0.365301.968701.42260HepG2GPKOW
RQCD1ENSG00000144580.91294.474901694.30570-0.388306.037104.66030HepG2HDGF
RQCD1ENSG00000144580.91724.632902488.03300-0.5287011.444109.78430HepG2HNRNPA2B1
RQCD1ENSG00000144580.91411.838901784.31580-0.337802.403001.75260HepG2HNRNPC
RQCD1ENSG00000144580.91656.587201926.73990-0.217902.632501.93250HepG2HNRNPF
RQCD1ENSG00000144580.92143.455902466.18500-0.202302.953202.25890HepG2HNRNPL
RQCD1ENSG00000144580.91627.877102144.39310-0.397602.226301.65520HepG2HNRNPLL
RQCD1ENSG00000144580.91071.715101772.52360-0.7259013.8005012.53400HepG2HNRNPU
RQCD1ENSG00000144580.91194.579302083.69010-0.8026010.764709.52740HepG2IGF2BP2
RQCD1ENSG00000144580.91388.585501810.58500-0.382805.288704.30060HepG2ILF2
RQCD1ENSG00000144580.91406.646601622.26430-0.205702.371201.42670HepG2KIF1C
RQCD1ENSG00000144580.91485.807101901.29290-0.355702.093101.43840HepG2NSUN2
RQCD1ENSG00000144580.91357.908201754.57360-0.369704.489403.44040HepG2PARN
RQCD1ENSG00000144580.91119.056201975.84280-0.820207.142405.55160HepG2PCBP2
RQCD1ENSG00000144580.91306.235801580.96040-0.275402.802602.06120HepG2PPIL4
RQCD1ENSG00000144580.91249.701601920.04580-0.6196013.9927012.45970HepG2PRPF4
RQCD1ENSG00000144580.91001.035001491.33860-0.575105.501704.40460HepG2PRPF8
RQCD1ENSG00000144580.91325.077502562.60640-0.9515021.0934019.65440HepG2PUF60
RQCD1ENSG00000144580.91788.539302718.31780-0.6039011.3422010.03400HepG2PUM2
RQCD1ENSG00000144580.91647.260602246.49990-0.447606.070604.86190HepG2RBM15
RQCD1ENSG00000144580.91436.608601927.99990-0.424404.000202.79230HepG2RBM27
RQCD1ENSG00000144580.91273.527402075.82480-0.7049011.200809.98740HepG2RPLP0
RQCD1ENSG00000144580.9831.633001160.60150-0.480905.017304.21760HepG2RPS19
RQCD1ENSG00000144580.91336.610202074.47530-0.634204.351002.41520HepG2RTF1
RQCD1ENSG00000144580.91146.199701578.54770-0.461706.975506.02040HepG2SAFB2
RQCD1ENSG00000144580.91658.549802457.05880-0.5670016.5875015.13310HepG2SLBP
RQCD1ENSG00000144580.91602.104401840.91590-0.200501.862501.31720HepG2SMN1
RQCD1ENSG00000144580.91302.448801855.72030-0.510803.596001.75770HepG2SND1
RQCD1ENSG00000144580.91694.928602361.75480-0.478602.733301.95690HepG2SNRNP70
RQCD1ENSG00000144580.91959.535703017.36820-0.6228018.9069017.90470HepG2SRFBP1
RQCD1ENSG00000144580.92874.591302372.049100.277104.106203.55790HepG2SRSF1
RQCD1ENSG00000144580.92069.940402530.15310-0.289604.300603.55050HepG2SRSF5
RQCD1ENSG00000144580.91593.966001893.01690-0.248102.044901.43640HepG2SRSF7
RQCD1ENSG00000144580.91467.608501929.76730-0.395007.019006.21220HepG2SRSF9
RQCD1ENSG00000144580.91656.994702619.81690-0.6609019.2709018.17900HepG2SSB
RQCD1ENSG00000144580.91426.361201924.57860-0.432203.232602.50870HepG2SUPV3L1
RQCD1ENSG00000144580.91830.911102132.02270-0.219702.226001.71410HepG2TAF15
RQCD1ENSG00000144580.91250.195201722.57370-0.462406.121205.43020HepG2TIAL1
RQCD1ENSG00000144580.91191.506801737.71910-0.544409.437008.49000HepG2TRIM56
RQCD1ENSG00000144580.91931.114302503.49330-0.374504.307203.18830HepG2TUFM
RQCD1ENSG00000144580.91815.150102649.86580-0.545805.148403.98580HepG2UBE2L3
RQCD1ENSG00000144580.91538.444902073.10460-0.430307.067106.03520HepG2UPF1
RQCD1ENSG00000144580.92540.831102001.497800.344106.035805.20890HepG2UTP3
RQCD1ENSG00000144580.91437.209601894.89930-0.398907.679606.65150HepG2ZC3H8
RQCD1ENSG00000144580.91387.812401905.02160-0.457002.935001.59460HepG2ZRANB2
RQCD1ENSG00000144580.9708.38790907.13050-0.356803.503901.78200K562AKAP1
RQCD1ENSG00000144580.92511.822501848.473600.442304.495603.78140K562AQR
RQCD1ENSG00000144580.9988.961301274.22380-0.365602.220001.44500K562BOP1
RQCD1ENSG00000144580.9828.484901354.93470-0.709705.619004.50890K562CPSF6
RQCD1ENSG00000144580.91772.376902722.54420-0.6193010.907409.04060K562CELF1
RQCD1ENSG00000144580.91353.830301769.81370-0.386604.263003.47820K562DDX47
RQCD1ENSG00000144580.91566.070301260.976100.312503.452102.45940K562DKC1
RQCD1ENSG00000144580.9790.452201009.58540-0.353003.808902.36790K562EIF2S1
RQCD1ENSG00000144580.91055.466301378.48000-0.385202.381201.58640K562FMR1
RQCD1ENSG00000144580.9820.301301168.32800-0.510202.818501.89580K562FTO
RQCD1ENSG00000144580.91395.44370998.642900.482606.946006.04820K562FXR1
RQCD1ENSG00000144580.9953.156701293.68450-0.440702.858902.05080K562GPKOW
RQCD1ENSG00000144580.9809.260801082.06820-0.419103.634802.96250K562HNRNPC
RQCD1ENSG00000144580.91259.690601573.95010-0.321303.481402.48120K562HNRNPU
RQCD1ENSG00000144580.9849.595501218.99690-0.520803.809202.53200K562IGF2BP2
RQCD1ENSG00000144580.91677.175901393.125700.267602.133901.35160K562MBNL1
RQCD1ENSG00000144580.9826.431001262.75710-0.611603.882702.83350K562METAP2
RQCD1ENSG00000144580.9930.223201156.96720-0.314702.508301.74800K562POLR2G
RQCD1ENSG00000144580.92069.154802518.15720-0.283303.000302.00420K562PUM2
RQCD1ENSG00000144580.9778.523001053.14100-0.435902.760201.94540K562RPS19
RQCD1ENSG00000144580.91719.807801422.047500.274202.785401.96810K562SF3A3
RQCD1ENSG00000144580.91532.934501220.098200.329202.993602.26100K562SRSF1
RQCD1ENSG00000144580.9898.794401152.33040-0.358502.671601.64320K562SRSF5
RQCD1ENSG00000144580.91476.460301160.491500.347303.465902.54790K562SYNCRIP
RQCD1ENSG00000144580.91109.957701528.14010-0.461308.076906.92880K562UPF1
RQCD1ENSG00000144580.91060.871301307.58610-0.301702.436801.61260K562WDR3
RQCD1ENSG00000144580.91708.696202082.51370-0.285402.364701.57640K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RQCD1 is not available on ENCORE database.





7 RBPs can affect the splicing of RQCD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERQCD1ENSG00000144580.9chr2+219449334219449444219447693219447809219452308219452418-0.212000.000000.00001excludedK562SF3B4
SERQCD1ENSG00000144580.9chr2+219457338219457430219457038219457125219458830219461021-0.119000.000910.01946excludedK562SF3B4
SERQCD1ENSG00000144580.9chr2+219449334219449444219447693219447809219452308219452418-0.111000.000850.03311excludedK562PRPF8
SERQCD1ENSG00000144580.9chr2+219449334219449444219447739219447809219452308219452418-0.064000.000020.00067excludedHepG2U2AF1
SERQCD1ENSG00000144580.9chr2+2194520272194521232194493342194494442194523082194524180.059000.001150.08518includedK562XRCC6
SERQCD1ENSG00000144580.9chr2+219449334219449444219447693219447809219452308219452418-0.210000.000000.00000excludedK562AQR
SERQCD1ENSG00000144580.9chr2+219445717219445837219445283219445463219447693219447809-0.054000.005580.05082excludedK562AQR
SERQCD1ENSG00000144580.9chr2+219457338219457430219456967219457125219458830219459249-0.093000.000010.00025excludedK562AQR
SERQCD1ENSG00000144580.9chr2+219449334219449444219447693219447809219452308219452418-0.157000.000000.00007excludedK562U2AF1
SERQCD1ENSG00000144580.9chr2+219457338219457430219457038219457125219458830219461021-0.120000.000000.00000excludedHepG2SF3A3
SERQCD1ENSG00000144580.9chr2+2194520272194521232194493342194494442194523082194524180.070000.000000.00020includedHepG2HNRNPC
A3SSRQCD1ENSG00000144580.9chr2+2194572802194574302194573382194574302194569672194571250.137000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RQCD1 is not avaliable on ENCORE database.