RC3H1

General Information

Gene Name : RC3H1
Gene ID : ENSG00000135870.11
Essential Gene : No

Functions

RNA stability & decay

Localization

Not Available

Domains (AlphaFold: RC3H1)

ZNF

Antibody Validation

View validation images for all RC3H1 antibodies

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RC3H1	ENSG00000135870.11	7.40	6.73	7.07	ENCSR000AEF
HepG2	RC3H1	ENSG00000135870.11	3.71	4.90	4.30	ENCSR985KAT
K562	RC3H1	ENSG00000135870.11	4.03	4.49	4.26	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
RNA Bind-n-Seq	RBNS: RC3H1	ENCSR728SXZ	RC3H1	cell-free sample	Released

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
RC3H1	ENCAB343OTJ	A300-514A	2			Released, ENCODE4
RC3H1	ENCAB412JBR	A300-515A	1			Released, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
RC3H1	K562	CRISPR			BGKcLV30-25,BGKcLV30-26	BGKcLV30-1,BGKcLV30-2	too many bands,	NotSatisfied	ENCODE4
RC3H1	HepG2	CRISPR			BGHcLV32-23,BGHcLV32-24	BGHcLV32-1,BGHcLV32-2	NO CLEAR BAND,	NotSatisfied	ENCODE4

RNA Bind-n-Seqn

GeneName	gene_aliases	Status	Project	Note
RC3H1	RC3H1		Released	ENCODE3

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
RC3H1	Product_ID: A300-514A Lot_ID: 2 Source: Bethyl Labs Target Name: RC3H1-human
RC3H1	Product_ID: A300-515A Lot_ID: 1 Source: Bethyl Labs Target Name: RC3H1-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RC3H1 is not avaliable on ENCORE database.

The binding motifs of RC3H1

Proteins bound to RNA

RC3H1 RNA is bound by 32 proteins.

eCLIP assay for RC3H1 is not avaliable on ENCORE database.

32 proteins are bound to RC3H1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	173903448	173903511	-	3'-UTR,intron-Distal	3.58878	4.13575	K562	KHSRP
chr1	173901243	173901296	-	3'-UTR,intron-Distal	3.30580	3.27377	K562	ZC3H11A
chr1	173900375	173900453	-	3'-UTR,intron-Distal	4.16963	8.29571	K562	PUM2
chr1	173907396	173907442	-	3'-UTR,intron-Distal	3.35632	3.62890	K562	FAM120A
chr1	173901313	173901360	-	3'-UTR,intron-Distal	3.56128	5.24375	K562	ZC3H11A
chr1	173906461	173906513	-	3'-UTR,intron-Distal	4.16361	3.54095	K562	FAM120A
chr1	173962231	173962284	-	5'-UTR,intron-Distal,intron-Proximal	4.42672	4.36101	K562	U2AF1
chr1	173991336	173991428	-	5'-UTR,intron-Distal	5.67975	7.12981	K562	DDX24
chr1	173991346	173991419	-	5'-UTR,intron-Distal	3.59699	9.86138	K562	ZNF622
chr1	173991228	173991304	-	5'-UTR,intron-Distal	3.04923	5.65791	K562	ZNF622
chr1	173991207	173991332	-	5'-UTR,intron-Distal	3.29104	3.00343	HepG2	GRWD1
chr1	173991208	173991337	-	5'-UTR,intron-Distal	4.05103	6.71512	K562	SRSF1
chr1	173991333	173991433	-	5'-UTR,intron-Distal	4.57572	15.04433	K562	UCHL5
chr1	173962221	173962306	-	5'-UTR,intron-Distal,intron-Proximal	5.60119	8.16423	HepG2	U2AF2
chr1	173991209	173991235	-	5'-UTR,intron-Distal	3.56086	3.43550	K562	AQR
chr1	173991329	173991434	-	5'-UTR,intron-Distal	3.88825	11.41042	HepG2	PPIG
chr1	173951924	173951976	-	CDS,intron-Distal	3.45316	3.64266	HepG2	PPIG
chr1	173961894	173961943	-	CDS,intron-Distal	3.04514	3.55800	HepG2	BCLAF1
chr1	173949946	173950002	-	CDS,intron-Distal,intron-Proximal	3.98033	5.36555	HepG2	BCLAF1
chr1	173947626	173947664	-	CDS,intron-Distal	3.35982	3.57857	HepG2	BCLAF1
chr1	173953715	173953770	-	CDS,intron-Distal,intron-Proximal	3.70479	8.43241	K562	U2AF2
chr1	173912711	173912833	-	CDS,intron-Distal,intron-Proximal	3.37135	6.97825	K562	TARDBP
chr1	173916640	173916685	-	CDS,intron-Distal	3.12768	3.39477	K562	BUD13
chr1	173952693	173952799	-	CDS,intron-Distal,intron-Proximal	3.58784	14.42791	K562	DDX24
chr1	173910467	173910530	-	CDS,intron-Distal,intron-Proximal	4.00371	9.95004	K562	BUD13
chr1	173949942	173950029	-	CDS,intron-Distal,intron-Proximal	3.53376	5.28199	HepG2	GRWD1
chr1	173953636	173953672	-	CDS,intron-Distal,intron-Proximal	3.98627	3.26547	HepG2	HLTF
chr1	173933220	173933281	-	CDS,intron-Distal	3.19220	3.13705	K562	BUD13
chr1	173953634	173953668	-	CDS,intron-Distal,intron-Proximal	4.64292	6.93329	K562	DDX24
chr1	173947623	173947683	-	CDS,intron-Distal,intron-Proximal	3.25936	4.33023	K562	ZNF622
chr1	173952766	173952799	-	CDS,intron-Distal,intron-Proximal	3.21268	4.39623	HepG2	PPIG
chr1	173953632	173953671	-	CDS,intron-Distal,intron-Proximal	3.69587	4.96634	HepG2	PPIG
chr1	173916545	173916718	-	CDS,intron-Distal	3.53908	16.13284	K562	ZNF622
chr1	173951917	173951970	-	CDS,intron-Distal	3.70370	6.36847	HepG2	BCLAF1
chr1	173933118	173933163	-	CDS,intron-Distal	3.60313	4.20387	K562	ZNF622
chr1	173952768	173952796	-	CDS,intron-Distal,intron-Proximal	3.87601	3.56019	HepG2	GRWD1
chr1	173910386	173910544	-	CDS,intron-Distal,intron-Proximal	3.33688	5.20150	K562	GPKOW
chr1	173950011	173950106	-	CDS,intron-Distal,intron-Proximal	3.41679	7.39995	HepG2	BCLAF1
chr1	173931000	173931059	-	CDS,intron-Distal,intron-Proximal	4.72579	6.23194	K562	IGF2BP1
chr1	173941656	173941724	-	CDS,intron-Distal	3.47893	5.53307	K562	ZNF622
chr1	173951819	173951875	-	CDS,intron-Distal,intron-Proximal	4.99691	5.70555	K562	PRPF8
chr1	173952691	173952766	-	CDS,intron-Distal	3.19899	6.54857	HepG2	PPIG
chr1	173930862	173930915	-	CDS,intron-Distal,intron-Proximal	3.64783	3.01429	K562	IGF2BP1
chr1	173939667	173939720	-	CDS,intron-Distal	3.48562	6.25299	K562	ZNF622
chr1	173941662	173941749	-	CDS,intron-Distal	4.35982	8.41475	HepG2	BCLAF1
chr1	173952762	173952797	-	CDS,intron-Distal,intron-Proximal	3.53316	5.37652	K562	BUD13
chr1	173931056	173931126	-	CDS,intron-Distal	3.06588	3.94979	HepG2	BCLAF1
chr1	173952682	173952762	-	CDS,intron-Distal	5.16618	8.87558	K562	BUD13
chr1	173953719	173953772	-	CDS,intron-Distal,intron-Proximal	3.27675	10.62619	HepG2	U2AF2
chr1	173930916	173931057	-	CDS,intron-Distal,intron-Proximal	4.05470	3.88780	HepG2	G3BP1
chr1	173953721	173953774	-	CDS,intron-Distal,intron-Proximal	3.88741	6.44734	K562	U2AF1
chr1	173939668	173939741	-	CDS,intron-Distal	3.33520	3.50696	K562	BUD13
chr1	173931010	173931105	-	CDS,intron-Distal,intron-Proximal	4.59943	3.57526	HepG2	IGF2BP1
chr1	173933236	173933310	-	CDS,intron-Distal	5.36574	5.93845	K562	DDX24
chr1	173951828	173951931	-	CDS,intron-Distal,intron-Proximal	5.73707	8.38577	HepG2	PRPF8
chr1	173952000	173952062	-	CDS,intron-Distal,intron-Proximal	3.56661	5.76944	HepG2	U2AF2
chr1	173916637	173916713	-	CDS,intron-Distal	4.03088	5.08388	K562	UCHL5
chr1	173952639	173952799	-	CDS,intron-Distal,intron-Proximal	3.87228	17.41968	HepG2	BCLAF1
chr1	173949943	173950146	-	CDS,intron-Distal,intron-Proximal	3.85779	23.02671	K562	ZNF622
chr1	173915613	173915719	-	CDS,intron-Distal,intron-Proximal	3.22304	5.63425	HepG2	BCLAF1
chr1	173921185	173921238	-	CDS,intron-Distal	3.48033	3.57857	HepG2	BCLAF1
chr1	173952661	173952768	-	CDS,intron-Distal	3.37220	11.91514	K562	ZNF622
chr1	173910484	173910574	-	CDS,intron-Distal,intron-Proximal	3.72048	9.47061	K562	SF3B4
chr1	173916622	173916711	-	CDS,intron-Distal	4.10718	4.45558	HepG2	GRWD1
chr1	173934103	173934161	-	CDS,intron-Distal	4.58034	4.70478	HepG2	BCLAF1
chr1	173916466	173916512	-	CDS,intron-Distal,intron-Proximal	3.88443	3.02181	K562	PRPF8
chr1	173945135	173945248	-	intron-Distal	4.74515	10.02898	K562	PTBP1
chr1	173961755	173961819	-	intron-Distal,intron-Proximal	5.40590	7.96842	K562	PRPF8
chr1	173990890	173990973	-	intron-Distal	3.07804	3.34333	HepG2	DGCR8
chr1	173949852	173949930	-	intron-Distal,intron-Proximal	4.17691	3.02181	K562	PRPF8
chr1	173949788	173949877	-	intron-Distal,intron-Proximal	4.33471	8.86302	K562	KHSRP
chr1	173990515	173990651	-	intron-Distal	3.18729	5.29687	K562	KHDRBS1
chr1	173977491	173977546	-	intron-Distal	3.93208	7.33269	K562	PTBP1
chr1	173977545	173977622	-	intron-Distal	3.38865	5.63673	HepG2	PCBP2
chr1	173945119	173945243	-	intron-Distal	4.00203	3.47525	K562	MATR3
chr1	173990902	173990989	-	intron-Distal	3.84416	3.63122	HepG2	PRPF4
chr1	173977546	173977605	-	intron-Distal	4.45773	6.11515	K562	PTBP1
chr1	173961758	173961826	-	intron-Distal,intron-Proximal	4.42296	10.79749	K562	TARDBP
chr1	173943730	173943817	-	intron-Distal	4.34059	4.74221	HepG2	PTBP1
chr1	173954315	173954402	-	intron-Distal	3.85503	3.42844	K562	KHSRP
chr1	173991092	173991142	-	intron-Distal	3.32404	4.83930	HepG2	XPO5
chr1	173967020	173967120	-	intron-Distal	3.96767	7.54016	K562	TARDBP
chr1	173970104	173970202	-	intron-Distal	3.52727	6.52138	HepG2	QKI
chr1	173991188	173991209	-	intron-Distal	4.60331	4.65563	K562	AQR
chr1	173990266	173990357	-	intron-Distal	3.11352	6.39842	HepG2	QKI
chr1	173966497	173966586	-	intron-Distal	5.09247	8.81516	K562	KHSRP
chr1	173977493	173977626	-	intron-Distal	3.11665	4.82148	HepG2	PTBP1
chr1	173990128	173990211	-	intron-Distal	3.72208	5.99504	HepG2	HNRNPC
chr1	173946507	173946613	-	intron-Distal	5.38553	8.88784	K562	PTBP1
chr1	173949877	173949943	-	intron-Distal,intron-Proximal	4.69906	6.80456	K562	KHSRP
chr1	173933007	173933083	-	intron-Distal,intron-Proximal	3.26720	3.20886	K562	PRPF8
chr1	173990870	173990967	-	intron-Distal	4.33032	5.18111	K562	CSTF2T
chr1	173953819	173953891	-	intron-Distal,intron-Proximal	3.10715	5.42536	K562	KHSRP
chr1	173947110	173947219	-	intron-Distal	4.00730	3.53723	HepG2	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RC3H1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RC3H1 is not available on ENCORE database.
78 RBPs can affect the levels of RC3H1.

The Knockdown/knockout RNA-Seq assay for RC3H1 is not available on ENCORE database.

78 RBPs can affect the gene expression of RC3H1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RC3H1	ENSG00000135870.7	831.31850	1227.73800	-0.56250	4.23560	3.59670	HepG2	AKAP1
RC3H1	ENSG00000135870.7	1165.06730	942.38750	0.30590	2.35060	1.63590	HepG2	CALR
RC3H1	ENSG00000135870.7	533.76350	757.88510	-0.50580	2.37620	1.67090	HepG2	CNOT7
RC3H1	ENSG00000135870.7	1240.93900	844.69500	0.55480	3.84100	3.04300	HepG2	CPSF6
RC3H1	ENSG00000135870.7	782.37820	623.05080	0.32840	2.01500	1.42530	HepG2	DDX21
RC3H1	ENSG00000135870.7	854.92800	609.48290	0.48810	4.38630	3.22580	HepG2	DDX24
RC3H1	ENSG00000135870.7	586.91680	1010.31180	-0.78360	7.44260	6.47430	HepG2	DDX6
RC3H1	ENSG00000135870.7	1023.13390	802.02300	0.35120	3.64040	2.88240	HepG2	DKC1
RC3H1	ENSG00000135870.7	455.93540	643.59740	-0.49730	4.73350	3.83490	HepG2	DNAJC21
RC3H1	ENSG00000135870.7	535.73400	637.95580	-0.25190	1.94690	1.38200	HepG2	DNAJC2
RC3H1	ENSG00000135870.7	623.42210	971.18310	-0.63950	5.68410	4.85190	HepG2	EIF2S1
RC3H1	ENSG00000135870.7	1721.04470	1182.29480	0.54160	10.65180	9.59720	HepG2	ETF1
RC3H1	ENSG00000135870.7	1208.14310	957.56440	0.33520	1.99650	1.44700	HepG2	GPKOW
RC3H1	ENSG00000135870.7	715.51480	926.54700	-0.37290	2.72550	2.05650	HepG2	HNRNPL
RC3H1	ENSG00000135870.7	1278.45550	913.81800	0.48430	4.17450	3.41660	HepG2	HNRNPLL
RC3H1	ENSG00000135870.7	511.86610	717.97630	-0.48820	5.43000	4.60270	HepG2	HNRNPU
RC3H1	ENSG00000135870.7	1456.86020	1115.01770	0.38570	2.65710	2.03500	HepG2	NCBP2
RC3H1	ENSG00000135870.7	1274.89300	910.95940	0.48480	7.54660	6.62260	HepG2	PCBP1
RC3H1	ENSG00000135870.7	1204.82790	807.63990	0.57690	3.59490	2.41890	HepG2	PCBP2
RC3H1	ENSG00000135870.7	846.38580	699.33770	0.27520	2.20940	1.51140	HepG2	PRPF4
RC3H1	ENSG00000135870.7	762.55500	543.48630	0.48850	3.90670	2.96620	HepG2	PRPF8
RC3H1	ENSG00000135870.7	832.23910	1078.91580	-0.37450	3.38500	2.44450	HepG2	RBM15
RC3H1	ENSG00000135870.7	1636.07700	988.19250	0.72730	14.89790	13.89040	HepG2	RBM22
RC3H1	ENSG00000135870.7	1160.94750	911.09380	0.34950	2.95620	2.26260	HepG2	RBM25
RC3H1	ENSG00000135870.7	1198.41460	1031.59830	0.21610	1.80090	1.34410	HepG2	NELFE
RC3H1	ENSG00000135870.7	1274.78800	815.41720	0.64450	3.28490	2.55010	HepG2	RPLP0
RC3H1	ENSG00000135870.7	408.23700	639.38150	-0.64730	8.29880	7.27260	HepG2	SAFB2
RC3H1	ENSG00000135870.7	2341.42600	1236.04590	0.92160	6.90110	5.80300	HepG2	SF3A3
RC3H1	ENSG00000135870.7	1202.20150	904.52050	0.41040	3.42700	2.64910	HepG2	SF3B1
RC3H1	ENSG00000135870.7	1359.49820	965.03710	0.49430	7.65170	6.74720	HepG2	SF3B4
RC3H1	ENSG00000135870.7	759.49420	922.82530	-0.28100	2.02070	1.40370	HepG2	SLBP
RC3H1	ENSG00000135870.7	591.41910	745.61320	-0.33420	3.29090	2.59990	HepG2	SMN1
RC3H1	ENSG00000135870.7	1511.82880	1116.14980	0.43770	7.51740	6.80260	HepG2	SRFBP1
RC3H1	ENSG00000135870.7	1446.40420	1007.31140	0.52190	8.86460	8.12560	HepG2	SRSF1
RC3H1	ENSG00000135870.7	914.94640	743.67550	0.29890	2.62020	1.94150	HepG2	SRSF7
RC3H1	ENSG00000135870.7	1506.48690	969.12200	0.63630	13.99870	13.02390	HepG2	SSB
RC3H1	ENSG00000135870.7	892.87120	1080.89650	-0.27570	2.03270	1.48360	HepG2	SUCLG1
RC3H1	ENSG00000135870.7	413.39030	703.88800	-0.76780	11.74360	10.69880	HepG2	TRIM56
RC3H1	ENSG00000135870.7	1651.18680	827.69830	0.99620	16.39700	14.81820	HepG2	U2AF1
RC3H1	ENSG00000135870.7	999.91020	690.14870	0.53480	8.47030	7.40220	HepG2	ZC3H8
RC3H1	ENSG00000135870.7	1845.96520	984.69680	0.90650	22.60550	21.09550	K562	AGGF1
RC3H1	ENSG00000135870.7	1615.62080	1024.63090	0.65690	9.07790	7.81460	K562	AKAP8L
RC3H1	ENSG00000135870.7	2641.65940	1231.84780	1.10050	21.42450	19.96660	K562	AQR
RC3H1	ENSG00000135870.7	1412.98150	1075.10200	0.39420	4.52990	3.33050	K562	ATP5C1
RC3H1	ENSG00000135870.7	2222.00410	1797.09580	0.30610	3.24050	2.18680	K562	CELF1
RC3H1	ENSG00000135870.7	1469.10090	1155.31960	0.34650	2.81420	1.33750	K562	DDX19B
RC3H1	ENSG00000135870.7	1595.65400	1102.51800	0.53320	9.12270	7.34000	K562	DKC1
RC3H1	ENSG00000135870.7	830.76520	1159.02580	-0.48040	4.45190	3.35770	K562	FIP1L1
RC3H1	ENSG00000135870.7	852.54040	1151.75580	-0.43400	3.87790	2.98880	K562	GRSF1
RC3H1	ENSG00000135870.7	1992.29880	818.36380	1.28350	9.32020	6.60020	K562	HNRNPA2B1
RC3H1	ENSG00000135870.7	1030.08690	718.29850	0.52000	5.21820	4.42200	K562	HNRNPC
RC3H1	ENSG00000135870.7	563.99990	953.33660	-0.75730	7.24320	5.62510	K562	HNRNPM
RC3H1	ENSG00000135870.7	992.60790	1571.36290	-0.66270	8.33220	6.96280	K562	HSPD1
RC3H1	ENSG00000135870.7	1889.93310	1087.35690	0.79740	13.91000	11.58610	K562	KIF1C
RC3H1	ENSG00000135870.7	1454.21070	1040.89460	0.48230	4.74730	3.22410	K562	MAK16
RC3H1	ENSG00000135870.7	1855.67420	1218.11900	0.60720	5.17190	3.84820	K562	MBNL1
RC3H1	ENSG00000135870.7	1969.22630	1557.98750	0.33780	2.93170	1.76450	K562	MSI2
RC3H1	ENSG00000135870.7	1696.98940	853.81600	0.99090	7.89410	6.10360	K562	NAA15
RC3H1	ENSG00000135870.7	1651.75240	1048.26150	0.65590	8.94540	7.15310	K562	PCBP2
RC3H1	ENSG00000135870.7	1166.29800	911.25670	0.35590	2.19760	1.45670	K562	PCBP3
RC3H1	ENSG00000135870.7	863.59300	698.97730	0.30500	2.23050	1.51070	K562	POLR2G
RC3H1	ENSG00000135870.7	846.56590	1315.75430	-0.63620	7.18930	5.74680	K562	PPIG
RC3H1	ENSG00000135870.7	1033.55810	787.61570	0.39200	2.82090	2.06450	K562	PRPF8
RC3H1	ENSG00000135870.7	3133.37820	1594.78100	0.97430	12.14950	10.42800	K562	PUF60
RC3H1	ENSG00000135870.7	2072.26890	1696.19950	0.28880	2.27380	1.31540	K562	PUM1
RC3H1	ENSG00000135870.7	2187.14820	1016.08640	1.10590	22.52930	21.00340	K562	PUS1
RC3H1	ENSG00000135870.7	1913.41510	990.07810	0.95040	24.84960	22.99380	K562	RBM15
RC3H1	ENSG00000135870.7	1736.51080	880.43520	0.97980	4.26200	2.23980	K562	RBM39
RC3H1	ENSG00000135870.7	438.90000	587.66730	-0.42110	2.86640	1.85750	K562	RCC2
RC3H1	ENSG00000135870.7	617.95380	802.32720	-0.37670	2.00690	1.31690	K562	RPS19
RC3H1	ENSG00000135870.7	780.26980	1095.79960	-0.48990	3.81020	2.61190	K562	RPS3
RC3H1	ENSG00000135870.7	1450.96870	654.38990	1.14870	5.93090	3.95760	K562	SF1
RC3H1	ENSG00000135870.7	1212.10170	992.21750	0.28870	2.73820	1.92760	K562	SF3A3
RC3H1	ENSG00000135870.7	1496.27620	1078.09370	0.47280	5.99370	4.70010	K562	SF3B4
RC3H1	ENSG00000135870.7	1628.82830	751.68360	1.11550	6.35580	4.23800	K562	SNRNP200
RC3H1	ENSG00000135870.7	1228.91030	1016.54280	0.27360	2.34470	1.47370	K562	SRPK2
RC3H1	ENSG00000135870.7	1879.55480	1121.92490	0.74430	13.14700	11.60480	K562	SRSF1
RC3H1	ENSG00000135870.7	841.01560	1057.89580	-0.33100	2.47880	1.48960	K562	SRSF4
RC3H1	ENSG00000135870.7	826.20000	1059.42030	-0.35870	2.50420	1.51250	K562	SRSF5
RC3H1	ENSG00000135870.7	1496.38040	899.02330	0.73490	3.09860	1.56000	K562	SUPT6H
RC3H1	ENSG00000135870.7	859.11820	701.07540	0.29320	2.12820	1.40680	K562	SYNCRIP
RC3H1	ENSG00000135870.7	709.46520	1135.59450	-0.67860	4.76670	3.82970	K562	TARDBP
RC3H1	ENSG00000135870.7	731.97950	1095.37410	-0.58150	5.59020	4.36170	K562	TIA1
RC3H1	ENSG00000135870.7	1314.41660	1004.92680	0.38720	2.50780	1.47520	K562	U2AF1
RC3H1	ENSG00000135870.7	1884.77530	1459.80690	0.36850	3.77680	2.26000	K562	WRN
RC3H1	ENSG00000135870.7	1610.85800	884.49850	0.86480	4.15780	2.01470	K562	YTHDC2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RC3H1 is not available on ENCORE database.

3 RBPs can affect the splicing of RC3H1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RC3H1	ENSG00000135870.7	chr1	-	173912579	173912753	173910402	173910518	173915613	173915746	-0.44500	0.00033	0.00842	excluded	K562	SRSF1
SE	RC3H1	ENSG00000135870.7	chr1	-	173912579	173912726	173910402	173910518	173915613	173915746	-0.28100	0.00297	0.04155	excluded	K562	PUS1
SE	RC3H1	ENSG00000135870.7	chr1	-	173912579	173912753	173910402	173910518	173915613	173915746	-0.47400	0.00001	0.00086	excluded	K562	RBM15

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RC3H1

General Information

Functions

Localization

Domains (AlphaFold: RC3H1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RC3H1 is not avaliable on ENCORE database.

32 proteins are bound to RC3H1 RNA:

eCLIP assay for RC3H1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RC3H1 is not available on ENCORE database.

78 RBPs can affect the gene expression of RC3H1 :

The Knockdown/knockout RNA-Seq assay for RC3H1 is not available on ENCORE database.

3 RBPs can affect the splicing of RC3H1 :

The Knockdown/knockout RNA-Seq assay for RC3H1 is not avaliable on ENCORE database.