RAB6A

General Information

Gene Name       : RAB6A
Gene ID             : ENSG00000175582.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RAB6A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RAB6AENSG00000175582.1933.4827.4130.45ENCSR000AEF
HepG2RAB6AENSG00000175582.1960.6759.8960.28ENCSR985KAT
K562RAB6AENSG00000175582.1943.4645.6444.55ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RAB6A is not avaliable on ENCORE database.



Proteins bound to RNA
  • RAB6A RNA is bound by 25 proteins.  







eCLIP assay for RAB6A is not avaliable on ENCORE database.





25 proteins are bound to RAB6A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr117338747673387525-3'-UTR,intron-Distal4.043049.82135K562TIA1
chr117338869473388727-3'-UTR,intron-Distal5.734979.67604K562IGF2BP1
chr117338886973388924-3'-UTR,intron-Distal,intron-Proximal3.433314.61266K562IGF2BP1
chr117341851573418561-3'-UTR,CDS,intron-Distal,intron-Proximal3.485655.56491HepG2BCLAF1
chr117338872773388742-3'-UTR,intron-Distal5.532218.11065K562IGF2BP1
chr117338730673387369-3'-UTR,intron-Distal4.5105921.16718K562PUM2
chr117341843973418501-3'-UTR,CDS,intron-Distal,intron-Proximal3.399054.34695HepG2BCLAF1
chr117338855973388621-3'-UTR,intron-Distal3.123894.10307K562TIA1
chr117338890973388933-3'-UTR,intron-Distal,intron-Proximal3.161854.08171K562YBX3
chr117338874673388802-3'-UTR,intron-Distal4.400006.74427K562IGF2BP1
chr117338756273387640-3'-UTR,intron-Distal3.488513.40672HepG2FUBP3
chr117338837173388427-3'-UTR,intron-Distal,intron-Proximal4.537393.87091K562IGF2BP2
chr117338847073388558-3'-UTR,intron-Distal3.1910510.85730K562PCBP1
chr117338844673388542-3'-UTR,intron-Distal5.044508.25864HepG2IGF2BP1
chr117338837173388429-3'-UTR,intron-Distal,intron-Proximal4.480965.73713K562IGF2BP1
chr117338848673388564-3'-UTR,intron-Distal5.0468726.51339HepG2PCBP2
chr117347196573472018-5'-UTR,intron-Distal3.293127.49276K562DDX3X
chr117347206673472113-5'-UTR,intron-Distal,intron-Proximal4.4417718.70677HepG2DDX3X
chr117347192873471961-5'-UTR,intron-Distal4.152535.01580HepG2DDX3X
chr117347177273471839-5'-UTR,intron-Distal,intron-Proximal4.278888.12455HepG2DDX3X
chr117347202373472066-5'-UTR,intron-Distal,intron-Proximal4.163578.12455HepG2DDX3X
chr117347169273471756-5'-UTR,intron-Distal,intron-Proximal4.067498.75653HepG2DDX3X
chr117347192873471964-5'-UTR,intron-Distal4.194926.30252K562DDX3X
chr117347185273471911-5'-UTR,intron-Distal3.627464.20287HepG2DDX3X
chr117344180873441860-5'-UTR,CDS,intron-Distal,intron-Proximal5.322775.80303K562IGF2BP1
chr117347196173472023-5'-UTR,intron-Distal3.8212713.44373HepG2DDX3X
chr117347206073472121-5'-UTR,intron-Distal,intron-Proximal3.105656.23662HepG2NCBP2
chr117344180873441867-5'-UTR,CDS,intron-Distal,intron-Proximal3.231424.99842HepG2PPIG
chr117347201873472112-5'-UTR,intron-Distal,intron-Proximal3.661786.49064K562DDX3X
chr117344180973441853-5'-UTR,CDS,intron-Distal,intron-Proximal3.096653.69775K562YBX3
chr117347169073471755-5'-UTR,intron-Distal,intron-Proximal3.487405.06399K562DDX3X
chr117342970473429770-CDS,intron-Distal,intron-Proximal4.082234.71174K562U2AF2
chr117342987673429952-CDS,intron-Distal,intron-Proximal3.7868917.07740HepG2U2AF2
chr117342988273429952-CDS,intron-Distal,intron-Proximal3.696706.41587HepG2U2AF1
chr117343190673431940-CDS,intron-Distal4.960923.01429K562IGF2BP1
chr117342987673429952-CDS,intron-Distal,intron-Proximal3.268878.02083K562U2AF1
chr117347155573471612-CDS,intron-Distal5.052197.59497HepG2PRPF8
chr117342970073429791-CDS,intron-Distal,intron-Proximal3.224627.49673HepG2U2AF2
chr117343194073431944-CDS,intron-Distal4.852523.25872K562IGF2BP1
chr117347158473471646-CDS,intron-Distal3.006973.73413HepG2PPIG
chr117346675773466839-intron-Distal4.448324.58544K562ILF3
chr117340601273406063-intron-Distal3.512025.79256HepG2HNRNPC
chr117343203373432132-intron-Distal,intron-Proximal3.233063.76473K562KHSRP
chr117339551273395612-intron-Distal4.161943.47315HepG2CSTF2
chr117346277973462885-intron-Distal4.132613.86368HepG2HNRNPM
chr117339659373396683-intron-Distal4.404214.98508HepG2ILF3
chr117343199173432084-intron-Distal,intron-Proximal3.078263.04623HepG2KHSRP
chr117341704573417111-intron-Distal3.120215.70281HepG2U2AF2
chr117346676573466852-intron-Distal3.840906.71492K562PTBP1
chr117341325573413373-intron-Distal5.000827.00410HepG2ILF3
chr117343607373436149-intron-Distal4.546054.51735HepG2QKI
chr117346685973466909-intron-Distal3.912616.25656HepG2PTBP1
chr117339122673391288-intron-Distal4.566614.79708HepG2U2AF2
chr117340769173407761-intron-Distal3.975503.98265HepG2ILF3
chr117343822273438289-intron-Distal4.146514.84804HepG2HNRNPC
chr117344165073441735-intron-Distal,intron-Proximal4.195456.83037K562KHSRP
chr117343671273436790-intron-Distal4.201153.79098HepG2SUGP2
chr117343090873430934-intron-Distal3.958543.24242HepG2HNRNPC
chr117346677673466885-intron-Distal4.370514.47026K562MATR3
chr117342716873427290-intron-Distal,intron-Proximal3.069143.82400K562KHSRP
chr117339435773394468-intron-Distal3.163123.78150HepG2ILF3
chr117344166273441739-intron-Distal,intron-Proximal3.532274.28919HepG2KHSRP
chr117343217373432255-intron-Distal4.177233.22073HepG2KHSRP
chr117346677073466859-intron-Distal5.1690326.54704HepG2PTBP1
chr117347122273471405-intron-Distal,intron-Proximal4.2090013.32996HepG2HNRNPK
chr117346674273466846-intron-Distal5.9321512.30102HepG2PCBP2
chr117341696173417045-intron-Distal3.554139.55311HepG2U2AF2
chr117343619773436331-intron-Distal4.113527.70388HepG2QKI
chr117343196773432035-intron-Distal,intron-Proximal3.844636.17334HepG2U2AF2
chr117346676573466919-intron-Distal3.346767.89970HepG2MATR3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RAB6A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RAB6A is not available on ENCORE database.

  • 102 RBPs can affect the levels of RAB6A.  








The Knockdown/knockout RNA-Seq assay for RAB6A is not available on ENCORE database.





102 RBPs can affect the gene expression of RAB6A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RAB6AENSG00000175582.152455.992102763.63540-0.170301.988001.45660HepG2ACO1
RAB6AENSG00000175582.151183.705802700.86780-1.1901025.6563023.22740HepG2ADAR
RAB6AENSG00000175582.152561.239504869.85230-0.9270013.4157012.33630HepG2AKAP1
RAB6AENSG00000175582.153389.937602776.689900.287804.494603.53400HepG2AKAP8L
RAB6AENSG00000175582.152972.062103601.22350-0.277004.022903.22430HepG2AUH
RAB6AENSG00000175582.153280.460504880.73690-0.573205.699004.87790HepG2BOP1
RAB6AENSG00000175582.151750.270102763.11910-0.6587023.3098021.80250HepG2CKAP4
RAB6AENSG00000175582.152175.336003278.03430-0.591603.901302.98710HepG2CNOT7
RAB6AENSG00000175582.151887.659101518.462900.313902.616201.56610HepG2CSTF2
RAB6AENSG00000175582.152835.748103444.72320-0.280703.988203.24260HepG2CELF1
RAB6AENSG00000175582.153117.038903704.13200-0.249004.743903.81340HepG2DAZAP1
RAB6AENSG00000175582.151131.926302378.79700-1.0715024.2504022.52800HepG2DDX21
RAB6AENSG00000175582.152338.024004665.07100-0.9966017.8999016.45400HepG2DDX3X
RAB6AENSG00000175582.155485.833504007.107700.453003.830503.11370HepG2DDX6
RAB6AENSG00000175582.152106.373402695.72510-0.355907.758606.73850HepG2DNAJC2
RAB6AENSG00000175582.153059.946803852.41250-0.332302.553201.98350HepG2EIF2S1
RAB6AENSG00000175582.152932.922102246.147600.384804.666103.30840HepG2EIF3G
RAB6AENSG00000175582.154226.854603500.496800.271902.073701.36100HepG2EIF4G2
RAB6AENSG00000175582.155478.693704134.741500.405909.524308.51820HepG2ETF1
RAB6AENSG00000175582.151598.756701989.61450-0.315502.594201.46610HepG2FAM120A
RAB6AENSG00000175582.152159.448302883.18330-0.417004.953803.91490HepG2FUBP3
RAB6AENSG00000175582.152937.570104295.23080-0.548106.283405.26760HepG2FXR1
RAB6AENSG00000175582.152260.858103984.67400-0.8176011.3988010.09180HepG2G3BP1
RAB6AENSG00000175582.153153.675904229.95790-0.423604.093003.00140HepG2G3BP2
RAB6AENSG00000175582.151885.447303034.51200-0.686605.604504.01140HepG2GRSF1
RAB6AENSG00000175582.152430.593003054.05610-0.329403.130702.39870HepG2HNRNPC
RAB6AENSG00000175582.152629.906203082.04410-0.228902.384001.71450HepG2HNRNPF
RAB6AENSG00000175582.152370.977404034.33540-0.7668013.1684011.75100HepG2HNRNPK
RAB6AENSG00000175582.152706.952103374.24410-0.317907.252806.20770HepG2HNRNPL
RAB6AENSG00000175582.152286.337903033.97740-0.408204.950403.71760HepG2HNRNPM
RAB6AENSG00000175582.15837.314003033.86030-1.85730126.69400123.59300HepG2HNRNPU
RAB6AENSG00000175582.151126.345003800.82450-1.7547014.1960012.17900HepG2IGF2BP3
RAB6AENSG00000175582.152308.319703098.97810-0.4249012.1482010.73580HepG2ILF2
RAB6AENSG00000175582.152643.625504073.87700-0.623905.574904.09880HepG2KHSRP
RAB6AENSG00000175582.151878.287502494.98560-0.409604.030202.65400HepG2LARP7
RAB6AENSG00000175582.153468.007604296.72850-0.309102.251801.65770HepG2MAGOH
RAB6AENSG00000175582.152837.216504320.84410-0.606806.476905.54500HepG2MATR3
RAB6AENSG00000175582.151727.509202330.28550-0.431802.339201.36970HepG2METAP2
RAB6AENSG00000175582.152541.599803558.95660-0.485706.888705.66910HepG2MSI2
RAB6AENSG00000175582.151844.995104422.67890-1.2613026.2039024.40220HepG2NCBP2
RAB6AENSG00000175582.152747.581103672.99850-0.418806.847305.65400HepG2NOL12
RAB6AENSG00000175582.156042.215504298.168600.491305.833804.77170HepG2NSUN2
RAB6AENSG00000175582.154443.137202996.134200.568403.281802.31050HepG2PABPC1
RAB6AENSG00000175582.152628.826103938.93530-0.583406.552005.45060HepG2PABPC4
RAB6AENSG00000175582.152282.345503002.93080-0.395905.000703.90590HepG2PARN
RAB6AENSG00000175582.152741.031803794.02080-0.4690011.3809010.28610HepG2PCBP1
RAB6AENSG00000175582.152502.404703860.57500-0.6255018.6941017.51150HepG2PTBP1
RAB6AENSG00000175582.152275.996503721.85490-0.7095033.2241031.63400HepG2PUM1
RAB6AENSG00000175582.152252.826802814.95430-0.321405.890305.05200HepG2PUS1
RAB6AENSG00000175582.152043.503204181.06180-1.0328036.4463034.60730HepG2QKI
RAB6AENSG00000175582.154230.941002726.655400.633703.600902.79940HepG2RAVER1
RAB6AENSG00000175582.152884.913703455.86730-0.260503.418702.86000HepG2RBM22
RAB6AENSG00000175582.152072.583903008.49260-0.537605.674904.23820HepG2RBM27
RAB6AENSG00000175582.153728.419704296.43520-0.204602.711002.17430HepG2NELFE
RAB6AENSG00000175582.152955.739604001.57120-0.4370010.238409.16810HepG2RECQL
RAB6AENSG00000175582.151507.660102166.30670-0.522905.478504.64550HepG2RPS19
RAB6AENSG00000175582.152195.224303291.67500-0.584504.708703.66550HepG2RPS3A
RAB6AENSG00000175582.152584.481904019.32640-0.6371020.0419018.68830HepG2SF3B4
RAB6AENSG00000175582.152553.361003150.64390-0.303206.629205.69950HepG2SMN1
RAB6AENSG00000175582.153266.207403903.25460-0.257104.705304.10230HepG2SRFBP1
RAB6AENSG00000175582.154984.611704195.319000.248604.324503.76530HepG2SRSF1
RAB6AENSG00000175582.153083.168403461.72140-0.167101.912401.37900HepG2SRSF5
RAB6AENSG00000175582.152542.365103027.90070-0.252102.997202.27740HepG2SRSF7
RAB6AENSG00000175582.154578.921203388.913700.4341011.0653010.17310HepG2SSB
RAB6AENSG00000175582.152159.636802937.17400-0.443602.695101.47190HepG2STAU1
RAB6AENSG00000175582.153664.230102547.989400.524102.874601.64920HepG2SUB1
RAB6AENSG00000175582.153004.814403937.00080-0.3898010.174709.10720HepG2SUCLG1
RAB6AENSG00000175582.153450.572402405.995400.520105.109904.23550HepG2SUPV3L1
RAB6AENSG00000175582.154281.519903770.950900.183101.865401.38840HepG2TAF15
RAB6AENSG00000175582.15896.426902947.74780-1.7174075.6493073.71550HepG2TIAL1
RAB6AENSG00000175582.152185.430102974.32860-0.444609.747708.78770HepG2TRIM56
RAB6AENSG00000175582.153029.048103512.66700-0.213703.072302.34470HepG2UPF1
RAB6AENSG00000175582.153134.021003610.50670-0.204202.454001.45660HepG2UTP18
RAB6AENSG00000175582.152533.680503391.33710-0.420609.502608.50060HepG2UTP3
RAB6AENSG00000175582.153396.967802766.477100.296105.886404.96370HepG2ZC3H8
RAB6AENSG00000175582.155115.621403863.256800.4050013.3973012.42060HepG2ZNF622
RAB6AENSG00000175582.153724.095104914.03280-0.400003.019101.73280K562ABCF1
RAB6AENSG00000175582.157936.334706002.953800.4027010.969209.93380K562AGGF1
RAB6AENSG00000175582.157285.788806246.379000.222001.912301.36500K562AKAP8L
RAB6AENSG00000175582.155162.991603989.417700.371902.882401.99210K562BOP1
RAB6AENSG00000175582.153607.748004461.11330-0.306304.967303.45470K562CPEB4
RAB6AENSG00000175582.158287.245206721.341100.302005.215303.96010K562DKC1
RAB6AENSG00000175582.152399.167302880.31460-0.263703.407102.05130K562EIF2S1
RAB6AENSG00000175582.153500.229202459.496500.5090010.976909.68880K562EIF2S2
RAB6AENSG00000175582.151777.410002285.07070-0.362505.078304.01390K562EIF3G
RAB6AENSG00000175582.152108.399602739.49390-0.377802.820801.99190K562EIF4A3
RAB6AENSG00000175582.152002.360002467.13030-0.301102.474901.40230K562EIF4B
RAB6AENSG00000175582.152799.316502163.898100.371302.997501.81460K562FKBP4
RAB6AENSG00000175582.155596.192504315.883200.374703.025602.12890K562FMR1
RAB6AENSG00000175582.151834.638502848.97050-0.6349011.7771010.61790K562FXR1
RAB6AENSG00000175582.154557.889603074.094700.568102.443701.78540K562G3BP2
RAB6AENSG00000175582.153377.215004171.62380-0.304803.123701.99400K562HNRNPL
RAB6AENSG00000175582.152072.913102548.62090-0.298103.563702.54900K562HNRNPU
RAB6AENSG00000175582.156649.372204788.939400.473405.761304.62840K562HSPD1
RAB6AENSG00000175582.152148.924003239.73360-0.592306.123804.24400K562IGF2BP3
RAB6AENSG00000175582.158274.685606628.851900.319803.993502.97890K562KIF1C
RAB6AENSG00000175582.152587.593203348.25250-0.371803.712802.72910K562MAGOH
RAB6AENSG00000175582.157932.602406345.537700.322002.780001.70160K562MAK16
RAB6AENSG00000175582.151999.188503341.66370-0.741209.955308.09680K562MATR3
RAB6AENSG00000175582.155848.450907426.00490-0.344502.859101.93100K562MBNL1
RAB6AENSG00000175582.152505.061603154.60350-0.332606.196305.02710K562MTPAP
RAB6AENSG00000175582.157484.903405205.102000.524004.542203.32390K562NAA15
RAB6AENSG00000175582.152145.958903252.93690-0.600107.840306.76260K562PTBP1
RAB6AENSG00000175582.159208.377706194.454900.571908.728507.81290K562PUS1
RAB6AENSG00000175582.157365.624906035.761300.287204.289103.56700K562RBM15
RAB6AENSG00000175582.153836.058603108.118800.303503.150001.43250K562RBM17
RAB6AENSG00000175582.151954.806903119.91000-0.674507.168105.73570K562RBM22
RAB6AENSG00000175582.152263.453003283.03510-0.536504.980503.46770K562NELFE
RAB6AENSG00000175582.151203.626401646.54990-0.452103.289902.39760K562RPS19
RAB6AENSG00000175582.152773.163504283.13450-0.627108.261806.42420K562RPS3
RAB6AENSG00000175582.152230.028601652.760300.432102.737901.41710K562RRP9
RAB6AENSG00000175582.153160.696903543.41960-0.164902.159401.32330K562SRPK2
RAB6AENSG00000175582.152159.345203188.81230-0.562407.331806.18980K562SRSF1
RAB6AENSG00000175582.153372.339904134.99810-0.294102.269601.33380K562SRSF4
RAB6AENSG00000175582.152001.972903227.61010-0.689009.404607.98680K562TARDBP
RAB6AENSG00000175582.151286.665702149.93780-0.740709.436307.62360K562TIAL1
RAB6AENSG00000175582.152788.601202075.947800.425703.241801.32230K562TRNAU1AP
RAB6AENSG00000175582.153778.883402980.346400.342402.470101.44670K562U2AF1
RAB6AENSG00000175582.153682.972603077.869300.258802.710901.91560K562U2AF2
RAB6AENSG00000175582.152139.652201656.451400.369203.010401.94070K562UCHL5
RAB6AENSG00000175582.154246.696403716.443400.192302.645701.94300K562UPF1
RAB6AENSG00000175582.155018.450004140.138400.277502.598801.76770K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RAB6A is not available on ENCORE database.





15 RBPs can affect the splicing of RAB6A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERAB6AENSG00000175582.15chr11-734296577342976373427295734274077343189073431944-0.065000.000060.00115excludedK562AQR
A3SSRAB6AENSG00000175582.15chr11-7341846473418584734184647341855873427295734274070.058000.000000.00000longerK562AQR
MXERAB6AENSG00000175582.15chr11-7342965773429763734298297342993573427295734274077343189073431944-0.143000.000110.018472includedHepG2HNRNPA1
MXERAB6AENSG00000175582.15chr11-73418464734185587343189073431944733906987339076573441809734418680.176000.000080.003001includedHepG2FTO
MXERAB6AENSG00000175582.15chr11-7342965773429763734298297342993573427295734274077343189073431944-0.150000.001190.083482includedHepG2UCHL5
MXERAB6AENSG00000175582.15chr11-73429657734297637343189073431944734272957342740773441809734418680.114000.000890.095961includedHepG2SMNDC1
MXERAB6AENSG00000175582.15chr11-73429657734297637342982973429935734272957342740773431890734319440.199000.000000.000041includedK562FXR1
MXERAB6AENSG00000175582.15chr11-7342729573427407734296577342976373390698733907657343189073431944-0.079000.000010.000182includedK562AQR
MXERAB6AENSG00000175582.15chr11-7342965773429763734298297342993573427295734274077343189073431944-0.112000.002720.057692includedK562TARDBP
MXERAB6AENSG00000175582.15chr11-7342965773429763734318907343194473427295734274077344180973441868-0.069000.007630.043432includedHepG2U2AF2
MXERAB6AENSG00000175582.15chr11-73429657734297637342982973429935734272957342740773431890734319440.174000.000010.001241includedHepG2HNRNPC
MXERAB6AENSG00000175582.15chr11-73429657734297637342982973429935734272957342740773431890734319440.257000.000000.000001includedK562HNRNPC
MXERAB6AENSG00000175582.15chr11-7342965773429763734298297342993573427295734274077343189073431944-0.172000.000060.004972includedK562HNRNPU
MXERAB6AENSG00000175582.15chr11-7342965773429763734298297342993573427295734274077343189073431944-0.185000.001150.036422includedHepG2HNRNPU
MXERAB6AENSG00000175582.15chr11-7342965773429763734298297342993573427295734274077343189073431944-0.123000.000590.032732includedK562TIA1
MXERAB6AENSG00000175582.15chr11-7342965773429763734298297342993573427295734274077343189073431944-0.109000.000660.014212includedK562SF3B4
MXERAB6AENSG00000175582.15chr11-73429657734297637342982973429935734272957342740773431890734319440.146000.003250.068961includedHepG2TIAL1
MXERAB6AENSG00000175582.15chr11-73429657734297637342982973429935734272957342740773431890734319440.127000.000400.028801includedK562HNRNPK
MXERAB6AENSG00000175582.15chr11-73429657734297637342982973429935734272957342740773431890734319440.150000.000730.018431includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RAB6A is not avaliable on ENCORE database.