RAB6A

General Information

Gene Name : RAB6A
Gene ID : ENSG00000175582.19
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RAB6A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RAB6A	ENSG00000175582.19	33.48	27.41	30.45	ENCSR000AEF
HepG2	RAB6A	ENSG00000175582.19	60.67	59.89	60.28	ENCSR985KAT
K562	RAB6A	ENSG00000175582.19	43.46	45.64	44.55	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RAB6A is not avaliable on ENCORE database.

Proteins bound to RNA

RAB6A RNA is bound by 25 proteins.

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eCLIP assay for RAB6A is not avaliable on ENCORE database.

25 proteins are bound to RAB6A RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	73466770	73466859	-	intron-Distal	5.16903	26.54704	HepG2	PTBP1
chr11	73388486	73388564	-	3'-UTR,intron-Distal	5.04687	26.51339	HepG2	PCBP2
chr11	73387306	73387369	-	3'-UTR,intron-Distal	4.51059	21.16718	K562	PUM2
chr11	73472066	73472113	-	5'-UTR,intron-Distal,intron-Proximal	4.44177	18.70677	HepG2	DDX3X
chr11	73429876	73429952	-	CDS,intron-Distal,intron-Proximal	3.78689	17.07740	HepG2	U2AF2
chr11	73471961	73472023	-	5'-UTR,intron-Distal	3.82127	13.44373	HepG2	DDX3X
chr11	73471222	73471405	-	intron-Distal,intron-Proximal	4.20900	13.32996	HepG2	HNRNPK
chr11	73466742	73466846	-	intron-Distal	5.93215	12.30102	HepG2	PCBP2
chr11	73388470	73388558	-	3'-UTR,intron-Distal	3.19105	10.85730	K562	PCBP1
chr11	73387476	73387525	-	3'-UTR,intron-Distal	4.04304	9.82135	K562	TIA1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 70 entries

eCLIP assay for RAB6A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RAB6A is not available on ENCORE database.
102 RBPs can affect the levels of RAB6A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RAB6A is not available on ENCORE database.

102 RBPs can affect the gene expression of RAB6A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RAB6A	ENSG00000175582.15	837.31400	3033.86030	-1.85730	126.69400	123.59300	HepG2	HNRNPU
RAB6A	ENSG00000175582.15	896.42690	2947.74780	-1.71740	75.64930	73.71550	HepG2	TIAL1
RAB6A	ENSG00000175582.15	2043.50320	4181.06180	-1.03280	36.44630	34.60730	HepG2	QKI
RAB6A	ENSG00000175582.15	2275.99650	3721.85490	-0.70950	33.22410	31.63400	HepG2	PUM1
RAB6A	ENSG00000175582.15	1844.99510	4422.67890	-1.26130	26.20390	24.40220	HepG2	NCBP2
RAB6A	ENSG00000175582.15	1183.70580	2700.86780	-1.19010	25.65630	23.22740	HepG2	ADAR
RAB6A	ENSG00000175582.15	1131.92630	2378.79700	-1.07150	24.25040	22.52800	HepG2	DDX21
RAB6A	ENSG00000175582.15	1750.27010	2763.11910	-0.65870	23.30980	21.80250	HepG2	CKAP4
RAB6A	ENSG00000175582.15	2584.48190	4019.32640	-0.63710	20.04190	18.68830	HepG2	SF3B4
RAB6A	ENSG00000175582.15	2502.40470	3860.57500	-0.62550	18.69410	17.51150	HepG2	PTBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 122 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RAB6A is not available on ENCORE database.

15 RBPs can affect the splicing of RAB6A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	RAB6A	ENSG00000175582.15	chr11	-	73418464	73418584			73418464	73418558	73427295	73427407	0.05800	0.00000	0.00000	longer	K562	AQR
MXE	RAB6A	ENSG00000175582.15	chr11	-	73429657	73429763	73429829	73429935	73427295	73427407	73431890	73431944	0.19900	0.00000	0.00004	1included	K562	FXR1
MXE	RAB6A	ENSG00000175582.15	chr11	-	73429657	73429763	73429829	73429935	73427295	73427407	73431890	73431944	0.25700	0.00000	0.00000	1included	K562	HNRNPC
MXE	RAB6A	ENSG00000175582.15	chr11	-	73427295	73427407	73429657	73429763	73390698	73390765	73431890	73431944	-0.07900	0.00001	0.00018	2included	K562	AQR
MXE	RAB6A	ENSG00000175582.15	chr11	-	73429657	73429763	73429829	73429935	73427295	73427407	73431890	73431944	0.17400	0.00001	0.00124	1included	HepG2	HNRNPC
SE	RAB6A	ENSG00000175582.15	chr11	-	73429657	73429763			73427295	73427407	73431890	73431944	-0.06500	0.00006	0.00115	excluded	K562	AQR
MXE	RAB6A	ENSG00000175582.15	chr11	-	73429657	73429763	73429829	73429935	73427295	73427407	73431890	73431944	-0.17200	0.00006	0.00497	2included	K562	HNRNPU
MXE	RAB6A	ENSG00000175582.15	chr11	-	73418464	73418558	73431890	73431944	73390698	73390765	73441809	73441868	0.17600	0.00008	0.00300	1included	HepG2	FTO
MXE	RAB6A	ENSG00000175582.15	chr11	-	73429657	73429763	73429829	73429935	73427295	73427407	73431890	73431944	-0.14300	0.00011	0.01847	2included	HepG2	HNRNPA1
MXE	RAB6A	ENSG00000175582.15	chr11	-	73429657	73429763	73429829	73429935	73427295	73427407	73431890	73431944	0.12700	0.00040	0.02880	1included	K562	HNRNPK

Showing 1 to 10 of 19 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RAB6A

General Information

Functions

Localization

Domains (AlphaFold: RAB6A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RAB6A is not avaliable on ENCORE database.

25 proteins are bound to RAB6A RNA:

eCLIP assay for RAB6A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RAB6A is not available on ENCORE database.

102 RBPs can affect the gene expression of RAB6A :

The Knockdown/knockout RNA-Seq assay for RAB6A is not available on ENCORE database.

15 RBPs can affect the splicing of RAB6A :

The Knockdown/knockout RNA-Seq assay for RAB6A is not avaliable on ENCORE database.