RAB5B

General Information

Gene Name       : RAB5B
Gene ID             : ENSG00000111540.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RAB5B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RAB5BENSG00000111540.1549.3945.4047.39ENCSR000AEF
HepG2RAB5BENSG00000111540.1526.4738.0332.25ENCSR985KAT
K562RAB5BENSG00000111540.1528.7133.2230.96ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RAB5B is not avaliable on ENCORE database.



Proteins bound to RNA
  • RAB5B RNA is bound by 22 proteins.  







eCLIP assay for RAB5B is not avaliable on ENCORE database.





22 proteins are bound to RAB5B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr125638681956386858+3'-UTR3.726109.43144K562UPF1
chr125638585256385925+3'-UTR,CDS,intron-Proximal3.210814.38107K562AQR
chr125638509856385171+3'-UTR,CDS,intron-Proximal4.244459.01749K562SF3B4
chr125638744656387547+3'-UTR3.831708.47374HepG2PCBP2
chr125638793356387979+3'-UTR4.246163.63655K562IGF2BP2
chr125638657956386658+3'-UTR3.3998126.36689K562UPF1
chr125638746156387519+3'-UTR3.289538.03660K562TIA1
chr125638675856386819+3'-UTR4.1110212.46490K562FAM120A
chr125638632056386428+3'-UTR3.6267018.30059K562UPF1
chr125638585956385960+3'-UTR,CDS,intron-Proximal3.712779.49781HepG2AQR
chr125638793056388028+3'-UTR4.189018.46970HepG2HNRNPK
chr125638635956386432+3'-UTR3.0227113.23409K562FAM120A
chr125638655056386579+3'-UTR3.9167115.62843K562UPF1
chr125638690256386956+3'-UTR4.328623.18462K562IGF2BP2
chr125638700956387067+3'-UTR4.5302814.60766K562FAM120A
chr125638746456387522+3'-UTR3.4035010.73480K562FAM120A
chr125638798456388042+3'-UTR3.297324.18090K562IGF2BP2
chr125638697456387056+3'-UTR3.2732113.04797K562UPF1
chr125638810256388174+3'-UTR4.131916.97865K562IGF2BP2
chr125638657156386659+3'-UTR3.2857513.56184K562FAM120A
chr125638745656387516+3'-UTR5.161026.61780K562IGF2BP2
chr125638819056388278+3'-UTR4.163325.84135HepG2PCBP2
chr125638836556388421+3'-UTR3.596719.91721K562DDX6
chr125638690256386965+3'-UTR3.7241212.32923K562FAM120A
chr125638791256388012+3'-UTR3.369029.94146K562PCBP1
chr125638796756388024+3'-UTR3.920943.95118HepG2PCBP2
chr125638832956388362+3'-UTR3.083828.95956K562UPF1
chr125638797556388031+3'-UTR3.314236.96718K562DDX55
chr125638069456380772+3'-UTR,CDS6.0054015.30086HepG2PCBP2
chr125638523656385317+3'-UTR,CDS,intron-Proximal4.1638112.08528K562AQR
chr125638673756386796+3'-UTR3.973189.72842K562UPF1
chr125638517556385272+3'-UTR,CDS,intron-Proximal3.091933.22545HepG2PPIG
chr125638753256387570+3'-UTR3.577053.45995K562IGF2BP2
chr125638738256387440+3'-UTR3.715125.01703K562PUM1
chr125638519156385290+3'-UTR,CDS,intron-Proximal4.046486.65791HepG2BUD13
chr125638522756385304+3'-UTR,CDS,intron-Proximal5.193517.23427HepG2AQR
chr125638757456387590+3'-UTR3.033835.99038K562UPF1
chr125638837356388433+3'-UTR3.971015.73713K562IGF2BP1
chr125638732956387440+3'-UTR4.45553400.00000K562PUM2
chr125638629756386421+3'-UTR3.5586412.89337HepG2PCBP2
chr125638721156387248+3'-UTR4.4452212.07826K562UPF1
chr125638842456388460+3'-UTR3.7911214.77584K562PUM2
chr125636785656367986+5'-UTR,intron-Distal,intron-Proximal3.433686.85966HepG2NCBP2
chr125638386856383927+CDS,intron-Distal,intron-Proximal3.962483.44423K562BUD13
chr125638376856383872+CDS,intron-Distal4.033763.60441HepG2GRWD1
chr125638387856383969+CDS,intron-Distal,intron-Proximal3.969395.28701K562PRPF8
chr125638443056384512+CDS,intron-Distal,intron-Proximal3.533163.91614K562BUD13
chr125638441556384492+CDS,intron-Distal,intron-Proximal4.811915.40008K562SF3B4
chr125638388256383930+intron-Distal,intron-Proximal5.743368.34710K562AQR
chr125637401156374059+intron-Distal4.928285.39854K562PTBP1
chr125637405656374135+intron-Distal5.8097323.24609HepG2PTBP1
chr125637409256374174+intron-Distal4.752924.57427HepG2PCBP2
chr125637405956374127+intron-Distal5.3220713.53269K562PTBP1
chr125637412756374188+intron-Distal3.772317.58331K562PTBP1
chr125637413556374187+intron-Distal4.410987.88692HepG2PTBP1
chr125636826456368353+intron-Distal3.695963.26022HepG2PRPF4
chr125636794456368043+intron-Distal,intron-Proximal4.037814.75425K562EFTUD2
chr125636800256368166+intron-Distal,intron-Proximal3.219486.23791HepG2PRPF4
chr125638524456385284+intron-Proximal4.840545.35117HepG2PRPF8
chr125638525556385326+intron-Proximal4.390413.49003K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RAB5B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RAB5B is not available on ENCORE database.

  • 99 RBPs can affect the levels of RAB5B.  








The Knockdown/knockout RNA-Seq assay for RAB5B is not available on ENCORE database.





99 RBPs can affect the gene expression of RAB5B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RAB5BENSG00000111540.112411.300401917.846700.330205.795104.97820HepG2ACO1
RAB5BENSG00000111540.111877.984803269.89520-0.800109.745108.81330HepG2AKAP1
RAB5BENSG00000111540.113483.569802533.390200.459403.790402.57540HepG2AKAP8
RAB5BENSG00000111540.112461.237601926.791800.353105.704304.63920HepG2AKAP8L
RAB5BENSG00000111540.113519.433002175.338700.6940022.2411020.63490HepG2AUH
RAB5BENSG00000111540.111206.073701577.31080-0.387102.657501.74120HepG2BCCIP
RAB5BENSG00000111540.111048.783401370.48580-0.386002.866601.95100HepG2BCLAF1
RAB5BENSG00000111540.111937.009201109.986600.8032012.8733011.70890HepG2BOP1
RAB5BENSG00000111540.112252.152901667.013900.433903.243702.41500HepG2CALR
RAB5BENSG00000111540.112284.431101917.351100.252603.871903.11050HepG2CKAP4
RAB5BENSG00000111540.112675.278701986.531700.429302.244601.56050HepG2CNOT7
RAB5BENSG00000111540.111836.424501019.012100.8496013.0308011.66010HepG2CPSF6
RAB5BENSG00000111540.111050.984001773.69720-0.7550022.9141021.07600HepG2DDX19B
RAB5BENSG00000111540.112098.233101749.116000.262401.966301.38190HepG2DDX21
RAB5BENSG00000111540.112045.856801711.466400.257402.125601.33520HepG2DDX24
RAB5BENSG00000111540.11903.973601450.99350-0.682705.840904.04850HepG2DDX27
RAB5BENSG00000111540.11877.952601174.71080-0.420103.180401.68420HepG2DDX28
RAB5BENSG00000111540.111846.307701157.168400.673902.390101.48200HepG2DDX59
RAB5BENSG00000111540.112368.926201848.858300.357503.073902.01570HepG2DDX5
RAB5BENSG00000111540.112295.634201801.843700.349303.268002.20650HepG2DHX30
RAB5BENSG00000111540.112159.380301834.839200.234902.707902.03690HepG2DKC1
RAB5BENSG00000111540.113145.506602586.624200.282101.903101.40050HepG2EIF2S1
RAB5BENSG00000111540.113483.427602469.966500.495905.703204.55580HepG2EIF4G2
RAB5BENSG00000111540.112882.759502497.541600.206802.328401.76880HepG2ETF1
RAB5BENSG00000111540.112063.949102884.20990-0.482804.752003.86140HepG2FXR1
RAB5BENSG00000111540.11969.385902675.46510-1.4646030.9752028.82520HepG2G3BP1
RAB5BENSG00000111540.11996.345901278.33270-0.359502.655601.77860HepG2GEMIN5
RAB5BENSG00000111540.112024.099401155.085600.809207.266906.26030HepG2GPKOW
RAB5BENSG00000111540.113194.271802097.888200.606409.112407.91040HepG2HNRNPC
RAB5BENSG00000111540.111388.242902709.29670-0.9647018.3893016.74000HepG2HNRNPK
RAB5BENSG00000111540.111965.688702380.92080-0.276505.032204.14470HepG2HNRNPL
RAB5BENSG00000111540.112420.151301102.323401.1344012.1253010.92560HepG2HNRNPLL
RAB5BENSG00000111540.11911.131501782.51280-0.9682020.9508018.79180HepG2HNRNPM
RAB5BENSG00000111540.112478.589102084.020800.250003.294202.63690HepG2HNRNPU
RAB5BENSG00000111540.113421.088902719.529500.331002.626101.96610HepG2IGF2BP2
RAB5BENSG00000111540.112367.544202885.21730-0.285301.861901.31910HepG2MAGOH
RAB5BENSG00000111540.111603.665902901.34620-0.8553011.3082010.09630HepG2MATR3
RAB5BENSG00000111540.112288.173802969.67340-0.376102.891402.24490HepG2NCBP2
RAB5BENSG00000111540.112283.093101695.063500.429607.626906.42020HepG2PRPF4
RAB5BENSG00000111540.111159.038001867.71350-0.688303.818801.73600HepG2PSIP1
RAB5BENSG00000111540.112346.309302626.15930-0.162602.212601.66960HepG2PUM1
RAB5BENSG00000111540.112041.756602624.27920-0.362104.638003.78070HepG2PUM2
RAB5BENSG00000111540.113184.724101953.439700.7051025.2143023.70030HepG2PUS1
RAB5BENSG00000111540.11624.372902321.37490-1.8945079.9089076.74540HepG2RBM15
RAB5BENSG00000111540.113025.992302087.490600.535509.369708.54420HepG2RBM22
RAB5BENSG00000111540.111306.903301974.01620-0.595007.093605.49830HepG2RBM27
RAB5BENSG00000111540.111115.826601602.99040-0.522704.402203.06240HepG2RCC2
RAB5BENSG00000111540.112265.733002981.93250-0.396303.143002.57360HepG2NELFE
RAB5BENSG00000111540.111931.497202777.07140-0.523807.704906.75300HepG2RECQL
RAB5BENSG00000111540.111642.866201855.93320-0.175901.847601.30410HepG2SAFB2
RAB5BENSG00000111540.111806.400902513.22260-0.476402.526101.88220HepG2SF3A3
RAB5BENSG00000111540.111246.196902789.74810-1.1626028.2508026.70230HepG2SF3B4
RAB5BENSG00000111540.111164.061201929.59740-0.729103.193001.46850HepG2SLTM
RAB5BENSG00000111540.111001.421302016.81040-1.0100011.573509.55220HepG2SMNDC1
RAB5BENSG00000111540.112130.516101214.001300.811306.755005.52720HepG2SNRNP70
RAB5BENSG00000111540.113375.653902357.757900.5177014.5191013.61050HepG2SRFBP1
RAB5BENSG00000111540.112423.674302911.79900-0.264703.525203.00770HepG2SRSF1
RAB5BENSG00000111540.112374.085901994.504500.251202.913502.20210HepG2SRSF7
RAB5BENSG00000111540.112219.761201744.369700.347603.258002.24320HepG2SUPT6H
RAB5BENSG00000111540.112448.237101543.800500.665206.794205.80780HepG2SUPV3L1
RAB5BENSG00000111540.111573.042801074.540900.549705.996704.98630HepG2TARDBP
RAB5BENSG00000111540.11575.08120911.92990-0.665206.269205.11890HepG2UCHL5
RAB5BENSG00000111540.112851.949302290.896200.315904.712103.38140HepG2UTP18
RAB5BENSG00000111540.111235.373701672.84690-0.437408.340007.27910HepG2ZC3H8
RAB5BENSG00000111540.113660.896302451.299900.5785014.6978013.68350HepG2ZNF622
RAB5BENSG00000111540.11976.712101274.90020-0.384403.273101.97490K562AARS
RAB5BENSG00000111540.113541.313702591.448400.450404.026503.36490K562AGGF1
RAB5BENSG00000111540.113960.808002696.597200.554602.950502.27540K562AKAP8L
RAB5BENSG00000111540.111044.140902476.12470-1.2458033.6527029.54960K562APOBEC3C
RAB5BENSG00000111540.112675.423401923.058900.476303.516302.87070K562AQR
RAB5BENSG00000111540.11994.739501337.08960-0.426706.126904.67790K562BCLAF1
RAB5BENSG00000111540.111683.21610895.882600.9097013.7307011.73730K562BOP1
RAB5BENSG00000111540.111696.809201173.621800.531802.963201.48770K562BUD13
RAB5BENSG00000111540.112688.931902060.890600.383702.788501.35140K562CKAP4
RAB5BENSG00000111540.111489.77410952.515900.645209.269307.81430K562CPSF6
RAB5BENSG00000111540.11948.818201172.49790-0.305403.128501.71180K562DDX27
RAB5BENSG00000111540.111486.708802068.11700-0.476206.603605.65860K562DDX47
RAB5BENSG00000111540.111784.797601466.947600.282802.961901.59240K562DDX6
RAB5BENSG00000111540.11804.105101120.71200-0.479004.172702.49550K562DNAJC21
RAB5BENSG00000111540.112072.048901589.228500.382606.012304.20250K562EIF2S1
RAB5BENSG00000111540.111604.287901361.040800.237102.297601.63290K562EIF2S2
RAB5BENSG00000111540.11766.089401084.61210-0.501606.299605.11610K562EIF3G
RAB5BENSG00000111540.111669.491101361.279400.294303.055801.82470K562EIF4B
RAB5BENSG00000111540.111761.662401211.274700.540302.789601.93750K562FIP1L1
RAB5BENSG00000111540.111589.23560969.286900.713204.983603.82810K562FMR1
RAB5BENSG00000111540.111207.83200821.612200.555804.626603.41440K562FTO
RAB5BENSG00000111540.111029.688101572.02420-0.6104011.2751010.13950K562FXR1
RAB5BENSG00000111540.11996.696201476.19660-0.566701.990801.40340K562G3BP2
RAB5BENSG00000111540.111544.25130909.366800.7639011.388309.75300K562GPKOW
RAB5BENSG00000111540.112125.391501394.528900.607909.061108.03270K562HNRNPC
RAB5BENSG00000111540.111647.044101245.522200.403003.963102.56940K562HNRNPF
RAB5BENSG00000111540.111142.371901505.37720-0.398103.105501.79020K562HNRNPK
RAB5BENSG00000111540.112185.210001507.473000.535504.646503.17650K562IGF2BP2
RAB5BENSG00000111540.111900.505901533.230600.309702.572901.43650K562IGF2BP3
RAB5BENSG00000111540.111384.85060776.620800.834303.080402.08840K562KRR1
RAB5BENSG00000111540.111820.552901351.035700.430204.204702.43710K562LARP7
RAB5BENSG00000111540.111220.191801584.11280-0.376603.662102.68730K562MAGOH
RAB5BENSG00000111540.111426.29720887.665200.684108.169106.61320K562METAP2
RAB5BENSG00000111540.113838.917702991.120800.359903.378302.12900K562MSI2
RAB5BENSG00000111540.111842.787901563.197700.237302.891702.06420K562MTPAP
RAB5BENSG00000111540.111906.142801509.482400.336503.498802.10350K562NCBP2
RAB5BENSG00000111540.112296.816601736.740700.4032010.013308.71480K562NSUN2
RAB5BENSG00000111540.112040.871601548.551600.398203.258501.78750K562PCBP1
RAB5BENSG00000111540.111026.316101539.07840-0.584608.264407.15750K562PTBP1
RAB5BENSG00000111540.112450.433503061.78180-0.321302.917102.07970K562PUF60
RAB5BENSG00000111540.114091.258902673.729500.613605.381304.65570K562PUS1
RAB5BENSG00000111540.111717.045402605.60650-0.601703.369802.72510K562RBM15
RAB5BENSG00000111540.111210.142201552.95400-0.359802.718501.63570K562NELFE
RAB5BENSG00000111540.111188.357601526.99210-0.361703.262802.08620K562SAFB
RAB5BENSG00000111540.112468.226301713.887000.526108.062506.73110K562SF3A3
RAB5BENSG00000111540.111390.334301081.706500.362002.875801.82370K562SRFBP1
RAB5BENSG00000111540.112005.447101755.929300.191602.306901.44410K562SRPK2
RAB5BENSG00000111540.112041.404401610.340900.342104.405902.90820K562SRSF7
RAB5BENSG00000111540.112059.477001453.175900.503002.670701.44710K562STAU1
RAB5BENSG00000111540.11996.815801718.94400-0.7861014.9196013.01940K562SYNCRIP
RAB5BENSG00000111540.112184.418301277.958700.7733012.7406010.39960K562TRIM56
RAB5BENSG00000111540.112482.943202056.816100.271503.605402.14860K562TROVE2
RAB5BENSG00000111540.111519.094501194.356200.346902.528901.56130K562UCHL5
RAB5BENSG00000111540.112358.382601841.511900.356806.167805.14560K562UPF1
RAB5BENSG00000111540.112383.775401575.709000.597103.728902.71200K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RAB5B is not available on ENCORE database.





8 RBPs can affect the splicing of RAB5B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERAB5BENSG00000111540.11chr12+563731555637325856367867563679235638065256380907-0.115000.000400.00798excludedK562PUS1
SERAB5BENSG00000111540.11chr12+563731555637325856367867563679235638065256380907-0.209000.000180.04527excludedK562SBDS
SERAB5BENSG00000111540.11chr12+563731555637325856367867563679235638065256380907-0.609000.002960.08493excludedK562TARDBP
MXERAB5BENSG00000111540.11chr12+5638373056383882563844655638458856380652563809075638514356385237-0.102000.003230.053822includedHepG2FTO
MXERAB5BENSG00000111540.11chr12+5638373056383882563844655638458856380652563809075638514356385237-0.168000.000080.008012includedHepG2BCCIP
MXERAB5BENSG00000111540.11chr12+56383730563838825638446556384588563806525638090756385143563852370.141000.003470.037111includedHepG2SFPQ
MXERAB5BENSG00000111540.11chr12+5638373056383882563844655638458856380652563809075638514356385237-0.126000.004870.082722includedK562PPIL4
MXERAB5BENSG00000111540.11chr12+5638373056383882563844655638458856380652563809075638514356385237-0.120000.002310.066632includedHepG2SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RAB5B is not avaliable on ENCORE database.