PTDSS2

General Information

Gene Name : PTDSS2
Gene ID : ENSG00000174915.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PTDSS2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PTDSS2	ENSG00000174915.11	6.28	4.12	5.20	ENCSR000AEF
HepG2	PTDSS2	ENSG00000174915.11	32.07	10.51	21.29	ENCSR985KAT
K562	PTDSS2	ENSG00000174915.11	18.24	11.40	14.82	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PTDSS2 is not avaliable on ENCORE database.

Proteins bound to RNA

PTDSS2 RNA is bound by 33 proteins.

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eCLIP assay for PTDSS2 is not avaliable on ENCORE database.

33 proteins are bound to PTDSS2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	485547	485665	+	intron-Distal	6.81082	24.95948	K562	PUM1
chr11	484765	484861	+	intron-Distal	6.64729	23.35623	K562	PUM1
chr11	490691	490758	+	3'-UTR,intron-Distal,intron-Proximal	5.39622	22.98045	HepG2	UPF1
chr11	450375	450447	+	5'-UTR,intron-Distal	5.37872	20.99214	HepG2	DDX3X
chr11	484861	484933	+	intron-Distal	6.79157	20.14495	K562	PUM1
chr11	483857	483887	+	intron-Distal	4.66964	18.11363	K562	HNRNPM
chr11	485537	485687	+	intron-Distal	6.37539	17.57917	K562	XRN2
chr11	475734	475791	+	intron-Distal	6.98632	16.36196	K562	QKI
chr11	490881	491027	+	3'-UTR,intron-Distal,intron-Proximal	4.57019	16.12298	HepG2	UPF1
chr11	485387	485457	+	intron-Distal	6.19101	15.88026	K562	PUM1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 159 entries

eCLIP assay for PTDSS2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PTDSS2 is not available on ENCORE database.
80 RBPs can affect the levels of PTDSS2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PTDSS2 is not available on ENCORE database.

80 RBPs can affect the gene expression of PTDSS2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PTDSS2	ENSG00000174915.7	661.49710	298.90180	1.14600	22.36220	20.77980	HepG2	SAFB2
PTDSS2	ENSG00000174915.7	728.83920	293.47140	1.31230	16.89510	15.59690	HepG2	BOP1
PTDSS2	ENSG00000174915.7	1017.82350	607.35840	0.74480	14.83530	13.68950	HepG2	PUM1
PTDSS2	ENSG00000174915.7	467.70990	817.16010	-0.80500	14.43760	13.35550	HepG2	SRSF9
PTDSS2	ENSG00000174915.7	379.69820	688.10470	-0.85780	14.41510	13.25870	HepG2	ACO1
PTDSS2	ENSG00000174915.7	556.34210	924.27520	-0.73240	11.98370	11.00440	HepG2	PTBP1
PTDSS2	ENSG00000174915.7	583.17730	329.04540	0.82550	11.43200	10.40170	HepG2	TRIM56
PTDSS2	ENSG00000174915.7	806.37950	383.22850	1.07320	11.41530	9.99060	K562	SRSF1
PTDSS2	ENSG00000174915.7	550.66520	902.78270	-0.71320	10.54680	9.56560	HepG2	TAF15
PTDSS2	ENSG00000174915.7	653.63830	1004.45740	-0.61990	9.64800	8.88570	HepG2	SRSF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 88 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PTDSS2 is not available on ENCORE database.

13 RBPs can affect the splicing of PTDSS2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PTDSS2	ENSG00000174915.7	chr11	+	464904	465037			460186	460288	473894	473977	0.29900	0.00000	0.00000	included	K562	HNRNPL
MXE	PTDSS2	ENSG00000174915.7	chr11	+	464904	465037	473894	473977	460186	460288	479084	479152	0.24900	0.00000	0.00000	1included	K562	HNRNPL
SE	PTDSS2	ENSG00000174915.7	chr11	+	486938	487073			479084	479152	487419	487470	-0.14000	0.00001	0.00272	excluded	HepG2	SRSF7
SE	PTDSS2	ENSG00000174915.7	chr11	+	464904	465037			458673	460288	473894	473977	0.07200	0.00013	0.01354	included	HepG2	HNRNPL
MXE	PTDSS2	ENSG00000174915.7	chr11	+	479084	479152	486938	487073	460186	460288	487419	487470	-0.12800	0.00014	0.00998	2included	K562	FXR1
MXE	PTDSS2	ENSG00000174915.7	chr11	+	479084	479152	486938	487073	460186	460288	487419	487470	0.14400	0.00015	0.01693	1included	HepG2	SRSF7
SE	PTDSS2	ENSG00000174915.7	chr11	+	464904	465037			458673	460288	473894	473977	-0.06500	0.00018	0.02731	excluded	K562	FMR1
SE	PTDSS2	ENSG00000174915.7	chr11	+	464904	465037			460186	460288	473894	473977	-0.06500	0.00028	0.03714	excluded	K562	CPSF6
MXE	PTDSS2	ENSG00000174915.7	chr11	+	479084	479152	486938	487073	460186	460288	487419	487470	0.16000	0.00073	0.02923	1included	K562	AGGF1
MXE	PTDSS2	ENSG00000174915.7	chr11	+	479084	479152	486938	487073	460186	460288	487419	487470	0.12200	0.00102	0.02056	1included	K562	PUS1

Showing 1 to 10 of 20 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PTDSS2

General Information

Functions

Localization

Domains (AlphaFold: PTDSS2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PTDSS2 is not avaliable on ENCORE database.

33 proteins are bound to PTDSS2 RNA:

eCLIP assay for PTDSS2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PTDSS2 is not available on ENCORE database.

80 RBPs can affect the gene expression of PTDSS2 :

The Knockdown/knockout RNA-Seq assay for PTDSS2 is not available on ENCORE database.

13 RBPs can affect the splicing of PTDSS2 :

The Knockdown/knockout RNA-Seq assay for PTDSS2 is not avaliable on ENCORE database.