PSMA3

General Information

Gene Name       : PSMA3
Gene ID             : ENSG00000100567.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PSMA3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PSMA3ENSG00000100567.12278.72243.85261.29ENCSR000AEF
HepG2PSMA3ENSG00000100567.12183.95248.22216.08ENCSR985KAT
K562PSMA3ENSG00000100567.12219.10214.67216.88ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PSMA3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PSMA3 RNA is bound by 24 proteins.  







eCLIP assay for PSMA3 is not avaliable on ENCORE database.





24 proteins are bound to PSMA3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr145873864458738709+3'-UTR4.266594.97297K562TIA1
chr145872766758727737+3'-UTR,CDS,intron-Distal,intron-Proximal5.274685.87535K562SND1
chr145873765458737719+3'-UTR,CDS,intron-Proximal4.130119.80976HepG2BCLAF1
chr145872448058724535+3'-UTR,5'-UTR,CDS4.308183.96931HepG2G3BP1
chr145872459458724654+3'-UTR,CDS,intron-Proximal5.137955.40008K562SF3B4
chr145872762358727689+3'-UTR,CDS,intron-Distal,intron-Proximal4.0041410.80633K562KHSRP
chr145873861758738710+3'-UTR5.09743400.00000K562PUM2
chr145872460858724727+3'-UTR,CDS,intron-Proximal3.393065.45291K562EFTUD2
chr145872446258724565+3'-UTR,5'-UTR,CDS,intron-Proximal3.162494.11889K562SND1
chr145872464258724690+3'-UTR,CDS,intron-Proximal3.337064.24009K562U2AF1
chr145873766958737700+3'-UTR,CDS3.301047.15230K562UCHL5
chr145873861858738708+3'-UTR3.331165.79126HepG2LARP4
chr145873770258737717+3'-UTR,CDS,intron-Proximal3.114585.86433K562UCHL5
chr145872464258724681+3'-UTR,CDS,intron-Proximal3.041256.56754K562YBX3
chr145873766658737717+3'-UTR,CDS,intron-Proximal3.360486.73967K562ZNF622
chr145872766558727723+3'-UTR,CDS,intron-Distal,intron-Proximal3.927923.11149HepG2G3BP1
chr145873765158737721+3'-UTR,CDS,intron-Proximal4.143213.83856K562CPSF6
chr145872452858724565+3'-UTR,5'-UTR,CDS,intron-Proximal3.895607.49884K562YBX3
chr145873860758738691+3'-UTR,CDS3.498744.73347HepG2SUB1
chr145873862758738693+3'-UTR4.740984.40829K562ZC3H11A
chr145871890258718959+5'-UTR,CDS,intron-Distal3.062993.59323K562LIN28B
chr145871157358711660+5'-UTR,CDS,intron-Proximal4.8815329.29950K562DDX3X
chr145871892558718962+5'-UTR,CDS,intron-Distal,intron-Proximal5.427589.10017HepG2BCLAF1
chr145871163758711700+5'-UTR,CDS,intron-Proximal4.111937.26133HepG2PRPF8
chr145871883758718902+5'-UTR,CDS,intron-Distal,intron-Proximal3.627634.12796K562LIN28B
chr145873856758738602+CDS,intron-Proximal3.856375.80935K562ZNF622
chr145873856758738599+CDS,intron-Proximal4.952036.13315HepG2BCLAF1
chr145871446658714480+CDS,intron-Distal,intron-Proximal3.5635214.16750K562DDX3X
chr145871370958713811+intron-Distal4.369004.30850HepG2QKI
chr145871395858714026+intron-Distal3.767793.29248HepG2SUGP2
chr145871177358711855+intron-Distal,intron-Proximal3.296253.35050HepG2SUGP2
chr145871408358714131+intron-Distal3.936163.08314K562TARDBP
chr145871347658713569+intron-Distal4.057073.53723HepG2PTBP1
chr145871458058714619+intron-Distal,intron-Proximal4.127143.85435K562PRPF8
chr145873698058737028+intron-Distal3.138554.74253K562KHSRP
chr145873702858737096+intron-Distal,intron-Proximal4.791536.28383K562KHSRP
chr145872831258728368+intron-Distal3.896563.45805K562KHSRP
chr145871165958711721+intron-Proximal5.623638.83608K562AQR
chr145871169758711748+intron-Proximal4.847435.50285K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PSMA3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PSMA3 is not available on ENCORE database.

  • 104 RBPs can affect the levels of PSMA3.  








The Knockdown/knockout RNA-Seq assay for PSMA3 is not available on ENCORE database.





104 RBPs can affect the gene expression of PSMA3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PSMA3ENSG00000100567.81234.927601663.37310-0.429703.421902.55030HepG2ASCC1
PSMA3ENSG00000100567.8763.725101505.12220-0.978805.324504.11550HepG2BCLAF1
PSMA3ENSG00000100567.81313.133401076.573400.286502.206101.51270HepG2CALR
PSMA3ENSG00000100567.81080.294001512.06590-0.485103.221602.16490HepG2CCAR1
PSMA3ENSG00000100567.8673.88630853.95800-0.341702.112201.50220HepG2CPSF6
PSMA3ENSG00000100567.82034.494302372.26350-0.221603.471702.65860HepG2DAZAP1
PSMA3ENSG00000100567.81153.932001702.68470-0.561302.275401.56790HepG2DDX55
PSMA3ENSG00000100567.81161.631601654.09330-0.509904.014103.28120HepG2DDX6
PSMA3ENSG00000100567.8886.576001150.75720-0.376303.088402.05820HepG2DHX30
PSMA3ENSG00000100567.8951.465101193.13700-0.326503.323202.55730HepG2DNAJC21
PSMA3ENSG00000100567.8798.194101182.50500-0.5670011.2466010.02950HepG2DNAJC2
PSMA3ENSG00000100567.81105.068301590.30430-0.525204.753503.98770HepG2EIF2S1
PSMA3ENSG00000100567.81278.854601757.56240-0.458703.371802.66780HepG2EIF4A3
PSMA3ENSG00000100567.81716.845502241.69720-0.384803.754102.81460HepG2EIF4G2
PSMA3ENSG00000100567.81531.820202600.16750-0.7634022.9369021.49140HepG2ETF1
PSMA3ENSG00000100567.8451.17370855.40100-0.922904.034102.80640HepG2FTO
PSMA3ENSG00000100567.81274.244601644.89370-0.368402.443901.81650HepG2G3BP1
PSMA3ENSG00000100567.8962.811901344.89600-0.482203.665702.48810HepG2GNB2L1
PSMA3ENSG00000100567.8647.36200968.05530-0.580504.486003.68390HepG2GPKOW
PSMA3ENSG00000100567.8691.308701204.56650-0.8011011.081309.92080HepG2HNRNPA1
PSMA3ENSG00000100567.8891.214701339.82560-0.588206.630305.59460HepG2HNRNPC
PSMA3ENSG00000100567.8975.744501479.87230-0.6009011.4069010.08400HepG2HNRNPF
PSMA3ENSG00000100567.81669.796602161.05930-0.372104.688803.82810HepG2HNRNPL
PSMA3ENSG00000100567.8596.34620923.83060-0.631505.647004.78140HepG2HNRNPLL
PSMA3ENSG00000100567.8956.648201330.96980-0.476407.588806.62300HepG2HNRNPU
PSMA3ENSG00000100567.81002.853001457.25330-0.539107.193406.07500HepG2IGF2BP1
PSMA3ENSG00000100567.81316.357401672.04900-0.345102.352701.72420HepG2IGF2BP2
PSMA3ENSG00000100567.8919.706501164.89190-0.341003.116102.03600HepG2KIF1C
PSMA3ENSG00000100567.82230.866201783.625600.322702.048101.50000HepG2MATR3
PSMA3ENSG00000100567.8647.86600942.12730-0.540202.722501.76250HepG2MTPAP
PSMA3ENSG00000100567.8600.61220839.37590-0.482903.988302.52880HepG2NAA15
PSMA3ENSG00000100567.81479.635602352.31240-0.6688014.3119012.63980HepG2NOL12
PSMA3ENSG00000100567.8636.09670819.13260-0.364902.182201.51560HepG2NSUN2
PSMA3ENSG00000100567.81203.412901626.04710-0.434203.354002.56410HepG2PABPC4
PSMA3ENSG00000100567.81080.683701317.47220-0.285803.020902.13960HepG2PARN
PSMA3ENSG00000100567.8774.140601187.12430-0.616809.767008.42660HepG2PPIL4
PSMA3ENSG00000100567.8878.772101314.16730-0.580602.338401.59280HepG2PRPF8
PSMA3ENSG00000100567.81342.980001700.45430-0.340504.825104.14560HepG2PTBP1
PSMA3ENSG00000100567.81830.228502245.38850-0.294901.929801.41920HepG2PUF60
PSMA3ENSG00000100567.81866.694802381.79400-0.351604.466903.62600HepG2PUM2
PSMA3ENSG00000100567.81092.904301297.92840-0.248002.185601.62290HepG2PUS1
PSMA3ENSG00000100567.81361.762701841.54820-0.435405.747404.89470HepG2QKI
PSMA3ENSG00000100567.81743.743901274.275400.452402.090201.47000HepG2RAVER1
PSMA3ENSG00000100567.81611.431301892.40890-0.231902.375801.86760HepG2NELFE
PSMA3ENSG00000100567.81311.279601762.58240-0.426706.770105.86770HepG2RECQL
PSMA3ENSG00000100567.8967.190901594.16170-0.7209010.002608.84080HepG2RPLP0
PSMA3ENSG00000100567.8696.309901251.70690-0.846106.782305.35150HepG2RPS10
PSMA3ENSG00000100567.8527.21420769.03000-0.544704.945604.15090HepG2RPS19
PSMA3ENSG00000100567.81148.881601465.24400-0.350902.530801.76360HepG2RPS2
PSMA3ENSG00000100567.8834.676701185.30630-0.506008.468707.43180HepG2SAFB2
PSMA3ENSG00000100567.8699.357401320.53390-0.917002.715101.38080HepG2SF1
PSMA3ENSG00000100567.81493.652302152.73810-0.5273013.1111011.77730HepG2SLBP
PSMA3ENSG00000100567.81180.680501382.29910-0.227502.597601.97100HepG2SMN1
PSMA3ENSG00000100567.8887.643801240.01870-0.482303.029701.36700HepG2SND1
PSMA3ENSG00000100567.8638.473801180.05950-0.886202.825301.49900HepG2SNRNP200
PSMA3ENSG00000100567.82607.330101847.860500.4966011.4018010.58360HepG2SRSF1
PSMA3ENSG00000100567.81625.930302216.85430-0.447208.578607.55400HepG2SRSF5
PSMA3ENSG00000100567.8953.323601453.92020-0.6089011.8322010.56380HepG2SRSF7
PSMA3ENSG00000100567.81238.828101503.35830-0.279203.271302.68140HepG2SRSF9
PSMA3ENSG00000100567.82117.707302521.29380-0.251704.289903.54660HepG2SUCLG1
PSMA3ENSG00000100567.8671.703101695.19460-1.335608.191607.12770HepG2SUPV3L1
PSMA3ENSG00000100567.81368.032701661.01080-0.280002.828502.26200HepG2TAF15
PSMA3ENSG00000100567.8578.12330900.37620-0.639206.156005.13510HepG2TARDBP
PSMA3ENSG00000100567.81195.519601526.15590-0.352303.346502.43080HepG2TIA1
PSMA3ENSG00000100567.8745.896501293.40560-0.7941014.2708013.29060HepG2TIAL1
PSMA3ENSG00000100567.8755.928701304.83920-0.7876018.5442017.25410HepG2TRIM56
PSMA3ENSG00000100567.81738.967602193.45900-0.335003.610102.59810HepG2TUFM
PSMA3ENSG00000100567.8662.158901372.82620-1.051903.408202.30830HepG2U2AF2
PSMA3ENSG00000100567.81553.883602321.61660-0.579305.995004.73350HepG2UBE2L3
PSMA3ENSG00000100567.81600.641501165.282100.457909.028308.18600HepG2ZNF622
PSMA3ENSG00000100567.81979.316201555.597200.347405.157304.42280K562AGGF1
PSMA3ENSG00000100567.82093.560501618.665400.371103.557002.81190K562AKAP8L
PSMA3ENSG00000100567.82375.595603510.50960-0.563405.796605.00110K562AQR
PSMA3ENSG00000100567.81608.113402157.41370-0.423907.916706.26280K562BCLAF1
PSMA3ENSG00000100567.8865.430501124.01830-0.377202.687701.82760K562BOP1
PSMA3ENSG00000100567.8473.21330730.69830-0.626805.391303.80680K562CCAR1
PSMA3ENSG00000100567.8921.745301195.17060-0.374803.404402.53160K562CPSF6
PSMA3ENSG00000100567.81271.880301636.71980-0.363804.327602.96710K562CSTF2
PSMA3ENSG00000100567.82092.131802412.36220-0.205502.247301.65050K562DDX47
PSMA3ENSG00000100567.8595.17180817.95810-0.458703.398101.90820K562DHX30
PSMA3ENSG00000100567.82256.518201741.825100.373405.377204.10300K562DKC1
PSMA3ENSG00000100567.81303.618201716.31410-0.396802.599501.71810K562EFTUD2
PSMA3ENSG00000100567.82062.470502495.71430-0.275103.277502.50580K562EIF2S2
PSMA3ENSG00000100567.8415.40240743.26990-0.839405.400503.95580K562EIF3A
PSMA3ENSG00000100567.8864.796101150.76320-0.412203.890202.35020K562EXOSC5
PSMA3ENSG00000100567.8832.937001216.02560-0.545905.168403.99380K562FMR1
PSMA3ENSG00000100567.8793.623501030.67740-0.377102.495401.63000K562FTO
PSMA3ENSG00000100567.82175.620101582.346300.459307.939006.98290K562FXR1
PSMA3ENSG00000100567.81658.311102349.88540-0.502907.144605.48250K562HNRNPA1
PSMA3ENSG00000100567.8885.717501601.85530-0.8548015.0925013.78380K562HNRNPC
PSMA3ENSG00000100567.81029.022701430.51260-0.475304.972203.38210K562HNRNPF
PSMA3ENSG00000100567.82064.765401527.657700.434603.513502.45200K562HNRNPM
PSMA3ENSG00000100567.82040.897002602.24540-0.350604.725803.55140K562HNRNPU
PSMA3ENSG00000100567.81734.724202222.52130-0.357502.326201.40840K562IGF2BP2
PSMA3ENSG00000100567.81743.087002260.85810-0.375203.626002.21960K562IGF2BP3
PSMA3ENSG00000100567.8665.53520974.32830-0.549903.560802.48680K562KRR1
PSMA3ENSG00000100567.81197.238601624.76020-0.440503.723801.96580K562LIN28B
PSMA3ENSG00000100567.8900.137901113.84220-0.307302.240501.45340K562METAP2
PSMA3ENSG00000100567.81459.333901892.83420-0.375207.768206.60550K562NSUN2
PSMA3ENSG00000100567.81191.131801577.26230-0.405103.026901.51580K562NUSAP1
PSMA3ENSG00000100567.81054.130201463.76760-0.473603.899202.91190K562PCBP3
PSMA3ENSG00000100567.83361.045204128.59570-0.296703.437001.84120K562PNPT1
PSMA3ENSG00000100567.8761.188301122.77450-0.560706.763805.52140K562POLR2G
PSMA3ENSG00000100567.8895.227901436.24600-0.682008.696906.89980K562PSIP1
PSMA3ENSG00000100567.83785.026604568.75050-0.271503.834602.70040K562PUM2
PSMA3ENSG00000100567.82040.447501605.300800.345902.737802.19670K562PUS1
PSMA3ENSG00000100567.81825.899601564.099900.223201.976301.45990K562RBM15
PSMA3ENSG00000100567.8944.369601310.46050-0.472705.431204.03440K562RCC2
PSMA3ENSG00000100567.81547.658701867.73070-0.271203.135502.26780K562SF3A3
PSMA3ENSG00000100567.8822.887201085.18490-0.399202.481701.56440K562SF3B1
PSMA3ENSG00000100567.8763.352001242.27410-0.702608.689206.57870K562SRFBP1
PSMA3ENSG00000100567.8585.25000758.05970-0.373302.542301.53960K562SRSF4
PSMA3ENSG00000100567.81652.379902101.36770-0.346802.965401.87130K562SRSF5
PSMA3ENSG00000100567.83183.182203824.96200-0.265002.959101.40020K562SUCLG1
PSMA3ENSG00000100567.8897.386501617.52430-0.850006.929205.26940K562SUPV3L1
PSMA3ENSG00000100567.81658.379802252.20730-0.441604.244903.36220K562TARDBP
PSMA3ENSG00000100567.81680.027002172.46850-0.370904.092903.06860K562TIA1
PSMA3ENSG00000100567.8813.834501381.41970-0.763308.892207.14400K562TIAL1
PSMA3ENSG00000100567.8895.935301467.66030-0.712109.338207.36710K562TRIM56
PSMA3ENSG00000100567.81541.840901825.71580-0.243802.013201.32860K562U2AF2
PSMA3ENSG00000100567.84005.158504942.88690-0.303503.211301.69200K562UBE2L3
PSMA3ENSG00000100567.81179.988601711.72710-0.536703.219902.11790K562UCHL5
PSMA3ENSG00000100567.81255.481702007.01150-0.6768017.5482015.91130K562UPF1
PSMA3ENSG00000100567.81361.074401717.33750-0.335403.164202.23150K562WDR3
PSMA3ENSG00000100567.81222.164601742.66460-0.511903.895102.36690K562XRN2
PSMA3ENSG00000100567.82818.696803955.13970-0.488704.362803.23880K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PSMA3 is not available on ENCORE database.





10 RBPs can affect the splicing of PSMA3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPSMA3ENSG00000100567.8chr14+587188415871896058714467587145505872446258724564-0.072000.001140.08738excludedHepG2PRPF8
SEPSMA3ENSG00000100567.8chr14+587276765872773858724642587247165873042258730488-0.070000.000040.00245excludedK562AKAP8L
SEPSMA3ENSG00000100567.8chr14+587276765872773858724642587247165873042258730488-0.077000.000250.03433excludedK562FMR1
SEPSMA3ENSG00000100567.8chr14+587276435872773858724642587247165873042258730488-0.068000.000000.00000excludedK562AQR
SEPSMA3ENSG00000100567.8chr14+587144675871455058711594587116595872446258724564-0.069000.000000.00002excludedK562SUPV3L1
SEPSMA3ENSG00000100567.8chr14+587276655872773858724642587247165873042258730488-0.057000.000000.00000excludedK562PUS1
SEPSMA3ENSG00000100567.8chr14+587188365871896058711621587116595872446258724564-0.100000.000010.00307excludedHepG2SUPV3L1
SEPSMA3ENSG00000100567.8chr14+587276765872773858724642587247165873042258730488-0.115000.000000.00012excludedK562UTP18
SEPSMA3ENSG00000100567.8chr14+587276435872773858724642587247165873042258730488-0.051000.000220.00552excludedK562U2AF2
SEPSMA3ENSG00000100567.8chr14+587276765872773858724642587247165873042258730488-0.061000.000140.00371excludedK562HNRNPC
A3SSPSMA3ENSG00000100567.8chr14+5872764358727738587276865872773858724642587247160.168000.004340.02555longerK562AQR
A3SSPSMA3ENSG00000100567.8chr14+587188365871896058718841587189605871435558714550-0.076000.000000.00000shorterK562AQR
A3SSPSMA3ENSG00000100567.8chr14+587188365871896058718841587189605871446758714550-0.076000.000000.00113shorterK562HNRNPC
MXEPSMA3ENSG00000100567.8chr14+58730422587304885873419158734238587246425872471658737135587372030.058000.000000.000001includedK562AQR
MXEPSMA3ENSG00000100567.8chr14+58727686587277385873042258730488587246425872471658734191587342380.079000.000190.017071includedHepG2LARP4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PSMA3 is not avaliable on ENCORE database.