PMM1

General Information

Gene Name       : PMM1
Gene ID             : ENSG00000100417.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PMM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PMM1ENSG00000100417.113.898.316.10ENCSR000AEF
HepG2PMM1ENSG00000100417.1136.2622.4929.38ENCSR985KAT
K562PMM1ENSG00000100417.1120.0614.1917.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PMM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PMM1 RNA is bound by 10 proteins.  







eCLIP assay for PMM1 is not avaliable on ENCORE database.





10 proteins are bound to PMM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr224198023941980301-3'-UTR,CDS,intron-Distal,intron-Proximal3.252895.41373HepG2PPIG
chr224198005841980115-3'-UTR,CDS,intron-Distal,intron-Proximal4.699639.04436K562AQR
chr224197296141973033-3'-UTR,intron-Distal5.161878.46072HepG2LARP4
chr224198005041980114-3'-UTR,CDS,intron-Distal,intron-Proximal3.324785.11956HepG2PRPF8
chr224197316441973292-3'-UTR,intron-Distal5.191538.57616HepG2UPF1
chr224197305541973164-3'-UTR,intron-Distal4.956786.23064HepG2UPF1
chr224197306641973300-3'-UTR,intron-Distal4.981316.64523HepG2AKAP1
chr224197997141980064-3'-UTR,CDS,intron-Distal,intron-Proximal3.687015.32768K562YBX3
chr224198026841980288-3'-UTR,CDS,intron-Distal,intron-Proximal4.9202612.91190HepG2PRPF8
chr224197295741973055-3'-UTR,intron-Distal3.502694.00430HepG2UPF1
chr224198215641982194-3'-UTR,CDS,intron-Distal3.273044.31744K562YBX3
chr224197307041973155-3'-UTR,intron-Distal3.365075.27408HepG2LARP4
chr224198570341985826-5'-UTR,CDS,intron-Distal,intron-Proximal4.157353.42611HepG2SRSF1
chr224197484341974887-CDS,intron-Distal,intron-Proximal4.167218.69525HepG2PPIG
chr224198575741985793-CDS,intron-Distal3.056563.69775K562YBX3
chr224197480941974886-CDS,intron-Distal,intron-Proximal3.409623.02345K562ZNF622
chr224197480841974818-CDS,intron-Distal,intron-Proximal5.169647.35950HepG2PPIG
chr224197481841974843-CDS,intron-Distal4.632269.28243HepG2PPIG
chr224197995941979971-CDS,intron-Distal,intron-Proximal4.156575.80295HepG2PPIG
chr224197391041973927-CDS,intron-Distal4.043454.96634HepG2PPIG
chr224197997141980024-CDS,intron-Distal,intron-Proximal3.8549610.98900HepG2PPIG
chr224197482941974885-CDS,intron-Distal3.946213.60441HepG2GRWD1
chr224198024241980248-intron-Distal,intron-Proximal6.1911311.56697K562AQR
chr224198050641980531-intron-Distal,intron-Proximal4.183717.38067HepG2PRPF8
chr224198048841980506-intron-Distal,intron-Proximal4.080486.79646HepG2PRPF8
chr224198024841980285-intron-Distal,intron-Proximal5.2168910.60410K562AQR
chr224198049241980531-intron-Distal,intron-Proximal4.282514.28193HepG2AQR
chr224198023941980268-intron-Distal,intron-Proximal4.3912212.28861HepG2PRPF8
chr224198006841980116-intron-Distal,intron-Proximal5.320916.74224HepG2AQR
chr224198024841980285-intron-Distal,intron-Proximal4.006476.28932HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PMM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PMM1 is not available on ENCORE database.

  • 94 RBPs can affect the levels of PMM1.  








The Knockdown/knockout RNA-Seq assay for PMM1 is not available on ENCORE database.





94 RBPs can affect the gene expression of PMM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PMM1ENSG00000100417.7345.97600468.75120-0.438202.453001.43910HepG2AATF
PMM1ENSG00000100417.7337.32750662.55500-0.9739017.2848016.04210HepG2ACO1
PMM1ENSG00000100417.7761.07760330.419701.2036017.1168014.98890HepG2ADAR
PMM1ENSG00000100417.7682.263101953.25290-1.5175022.8794021.51450HepG2AKAP1
PMM1ENSG00000100417.71125.812501616.05530-0.521504.832003.80720HepG2ASCC1
PMM1ENSG00000100417.7411.41500551.66340-0.423202.695001.31050HepG2ATP5C1
PMM1ENSG00000100417.7425.15010706.33760-0.732403.969003.04710HepG2CNOT7
PMM1ENSG00000100417.7302.79280161.372000.907804.846203.95730HepG2CPSF6
PMM1ENSG00000100417.7753.16430612.732200.297602.790501.95350HepG2DDX19B
PMM1ENSG00000100417.7852.046701870.85930-1.1347018.1106016.65850HepG2DDX3X
PMM1ENSG00000100417.7964.791401607.59960-0.736607.536306.56250HepG2DDX6
PMM1ENSG00000100417.7470.71360320.897700.552603.355002.27970HepG2DHX30
PMM1ENSG00000100417.71025.92530633.865200.6946011.6244010.43440HepG2DKC1
PMM1ENSG00000100417.7564.42390332.699800.762509.039807.82130HepG2DNAJC21
PMM1ENSG00000100417.7470.47860329.800400.512404.965004.13110HepG2DNAJC2
PMM1ENSG00000100417.71250.941801544.93540-0.304501.915801.41210HepG2EIF2S1
PMM1ENSG00000100417.7325.26690463.83830-0.512003.748102.38970HepG2EIF2S2
PMM1ENSG00000100417.7229.93920399.72440-0.797805.518604.27300HepG2EIF3D
PMM1ENSG00000100417.71133.050701707.09860-0.591305.287704.40380HepG2EIF4A3
PMM1ENSG00000100417.7558.854801662.55170-1.5729021.1725019.39670HepG2EIF4B
PMM1ENSG00000100417.7980.26510763.386500.360702.417001.65300HepG2EIF4G2
PMM1ENSG00000100417.7795.016801127.73680-0.504407.334606.43470HepG2ETF1
PMM1ENSG00000100417.7331.11410617.58440-0.899307.450306.25150HepG2FIP1L1
PMM1ENSG00000100417.7682.547701093.87360-0.680408.572607.22990HepG2FUBP3
PMM1ENSG00000100417.7869.128501723.10690-0.987409.252508.05470HepG2FXR1
PMM1ENSG00000100417.71107.252501598.05770-0.529303.993303.20210HepG2G3BP1
PMM1ENSG00000100417.7402.56170182.885601.138208.968207.86020HepG2GPKOW
PMM1ENSG00000100417.7430.22770653.96970-0.604102.749801.64100HepG2GRSF1
PMM1ENSG00000100417.7311.77630509.50460-0.708603.362701.81660HepG2HLTF
PMM1ENSG00000100417.7555.61070335.887600.726005.237404.38640HepG2HNRNPA1
PMM1ENSG00000100417.7649.35370325.534100.9961016.1493014.60640HepG2HNRNPF
PMM1ENSG00000100417.7851.004001619.05750-0.9279011.235909.91430HepG2HNRNPK
PMM1ENSG00000100417.71061.72120735.860100.528808.742007.60960HepG2HNRNPL
PMM1ENSG00000100417.7289.55190174.534900.730202.809402.17550HepG2HNRNPLL
PMM1ENSG00000100417.7277.76560425.98630-0.616904.773503.56390HepG2HNRNPM
PMM1ENSG00000100417.7690.02930320.556201.1060016.8411015.22940HepG2IGF2BP1
PMM1ENSG00000100417.7925.260501624.25670-0.811809.905208.71390HepG2IGF2BP2
PMM1ENSG00000100417.7692.180701524.83450-1.139404.744103.46730HepG2IGF2BP3
PMM1ENSG00000100417.7502.20390379.119800.405503.604002.77730HepG2ILF2
PMM1ENSG00000100417.7828.780401633.97530-0.9793010.979508.90830HepG2KHSRP
PMM1ENSG00000100417.7664.265401723.71170-1.3757018.3799016.77000HepG2MAGOH
PMM1ENSG00000100417.7341.661301733.24260-2.3428039.6126037.44560HepG2MATR3
PMM1ENSG00000100417.7329.16740499.64110-0.602104.978203.91590HepG2MSI2
PMM1ENSG00000100417.7758.523901773.97550-1.2257014.6314013.25170HepG2NCBP2
PMM1ENSG00000100417.7269.17200154.789100.798102.879102.11550HepG2NSUN2
PMM1ENSG00000100417.7922.824401579.40590-0.775309.294207.98950HepG2PABPC4
PMM1ENSG00000100417.7604.384001539.72990-1.3491023.3979021.92310HepG2PCBP1
PMM1ENSG00000100417.7579.56210331.037900.8079010.250708.88060HepG2PPIL4
PMM1ENSG00000100417.7594.273701566.63150-1.3985023.7873022.48160HepG2PTBP1
PMM1ENSG00000100417.7621.19720811.66040-0.385804.615303.89100HepG2PUM1
PMM1ENSG00000100417.7668.18360811.07820-0.279601.941301.37340HepG2PUM2
PMM1ENSG00000100417.71387.707801696.91630-0.290202.379701.79300HepG2QKI
PMM1ENSG00000100417.7238.86160484.78190-1.021205.914004.90980HepG2RAVER1
PMM1ENSG00000100417.7528.01840942.57440-0.8360013.7441012.76420HepG2RBM22
PMM1ENSG00000100417.7916.107301539.97910-0.749308.440407.31250HepG2RBM25
PMM1ENSG00000100417.7470.76930671.94260-0.513303.949902.75080HepG2RBM27
PMM1ENSG00000100417.7907.594801743.59450-0.9419014.1159013.07150HepG2NELFE
PMM1ENSG00000100417.71290.448801623.76880-0.331502.660802.05480HepG2RECQL
PMM1ENSG00000100417.7531.79750350.708200.600504.485703.64520HepG2RPLP0
PMM1ENSG00000100417.7733.25660476.494700.621803.597002.52110HepG2RPS10
PMM1ENSG00000100417.7171.97820388.97910-1.1775012.1968011.01760HepG2RPS19
PMM1ENSG00000100417.7418.35350619.67100-0.566804.529603.51960HepG2RPS2
PMM1ENSG00000100417.7181.09750304.15830-0.748102.615001.84810HepG2RRP9
PMM1ENSG00000100417.7572.00010330.522000.7912010.838809.69420HepG2SAFB2
PMM1ENSG00000100417.7627.975701631.24710-1.3772020.8651019.49210HepG2SF3B4
PMM1ENSG00000100417.71041.71740733.115900.506806.928105.89960HepG2SLBP
PMM1ENSG00000100417.7635.836901064.59450-0.7436014.5294013.62030HepG2SRFBP1
PMM1ENSG00000100417.7557.417801702.59470-1.6109030.1498028.95770HepG2SRSF1
PMM1ENSG00000100417.7508.86460754.93000-0.569106.971306.04110HepG2SRSF5
PMM1ENSG00000100417.7566.67500319.833000.8251010.483909.27920HepG2SRSF7
PMM1ENSG00000100417.7623.163401385.08770-1.1523019.3483018.13240HepG2SRSF9
PMM1ENSG00000100417.71676.52370924.305000.8589024.8289023.63390HepG2SSB
PMM1ENSG00000100417.7303.90420815.18730-1.423503.927102.41820HepG2SSRP1
PMM1ENSG00000100417.7596.98040858.58100-0.524307.401306.46390HepG2SUCLG1
PMM1ENSG00000100417.7667.555701530.15290-1.1967018.6872017.41770HepG2TAF15
PMM1ENSG00000100417.71098.916401406.22020-0.355703.434302.50660HepG2TIA1
PMM1ENSG00000100417.7568.99700360.598100.657905.860305.18380HepG2TIAL1
PMM1ENSG00000100417.7306.66480528.19440-0.784405.008404.17680HepG2U2AF1
PMM1ENSG00000100417.7426.49390531.74540-0.318202.273301.63010HepG2UPF1
PMM1ENSG00000100417.7219.54730513.37660-1.2255017.9426016.61550HepG2UTP3
PMM1ENSG00000100417.7310.35350476.98800-0.620002.971301.66170HepG2XRCC5
PMM1ENSG00000100417.7254.52640533.28710-1.067108.543806.78350HepG2XRCC6
PMM1ENSG00000100417.7919.68230390.901801.2342014.2481012.62070HepG2XRN2
PMM1ENSG00000100417.7534.21840385.368200.471104.337803.52690HepG2ZC3H8
PMM1ENSG00000100417.7683.51820517.079200.402503.412702.79480K562AGGF1
PMM1ENSG00000100417.7402.19670509.83520-0.342102.298501.43800K562EIF4G2
PMM1ENSG00000100417.7232.09330140.373800.725303.770202.77030K562FIP1L1
PMM1ENSG00000100417.7135.90520217.20460-0.676502.982701.80400K562FKBP4
PMM1ENSG00000100417.7216.99040332.66490-0.616404.185003.46320K562FXR1
PMM1ENSG00000100417.732.17010149.51030-2.2165013.0130011.23120K562G3BP2
PMM1ENSG00000100417.7178.76260115.462500.630502.283001.44170K562HNRNPM
PMM1ENSG00000100417.7334.49150190.312800.813505.372104.27940K562HSPD1
PMM1ENSG00000100417.7428.46640246.063400.800105.315903.69940K562IGF2BP2
PMM1ENSG00000100417.7374.71540250.195700.582603.929902.45670K562IGF2BP3
PMM1ENSG00000100417.7190.42600323.73560-0.765603.116601.79760K562PABPC1
PMM1ENSG00000100417.7274.68010159.356400.785404.850703.71890K562PPIG
PMM1ENSG00000100417.7171.39200300.44390-0.809803.627101.80270K562RPS3A
PMM1ENSG00000100417.7302.39410191.669800.657702.772001.44480K562RRP9
PMM1ENSG00000100417.7380.36140232.526300.709905.160403.64460K562SRSF5
PMM1ENSG00000100417.7357.08730249.067800.519602.864602.14570K562TARDBP
PMM1ENSG00000100417.7401.43800240.267200.740405.999104.72320K562TIA1
PMM1ENSG00000100417.7413.46160235.892700.809503.506502.24850K562TRA2A
PMM1ENSG00000100417.788.92190149.63220-0.750803.155702.29880K562U2AF2
PMM1ENSG00000100417.7408.55750316.282400.369202.332201.66960K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PMM1 is not available on ENCORE database.





17 RBPs can affect the splicing of PMM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPMM1ENSG00000100417.7chr22-4198505541985167419820794198219741985722419858510.132000.000000.00003includedHepG2U2AF1
SEPMM1ENSG00000100417.7chr22-419802844198037641980023419800624198053041980607-0.095000.003110.05205excludedHepG2U2AF1
SEPMM1ENSG00000100417.7chr22-419820794198219741980530419806074198572241985829-0.099000.000510.06385excludedHepG2HNRNPM
SEPMM1ENSG00000100417.7chr22-4198505541985167419820794198219741985722419858750.271000.000000.00000includedHepG2U2AF2
SEPMM1ENSG00000100417.7chr22-419802844198037641979962419800624198053041980607-0.071000.000110.00215excludedHepG2U2AF2
SEPMM1ENSG00000100417.7chr22-419820794198219741980530419806074198572241985829-0.052000.000560.02747excludedHepG2MATR3
SEPMM1ENSG00000100417.7chr22-4198505541985167419820794198219741985722419858510.116000.000020.00425includedHepG2PCBP2
SEPMM1ENSG00000100417.7chr22-419802844198037641979986419800624198053041980607-0.070000.000450.02577excludedHepG2PCBP1
SEPMM1ENSG00000100417.7chr22-4198505541985167419820794198219741985722419858510.100000.002980.04651includedK562HNRNPC
A3SSPMM1ENSG00000100417.7chr22-419799624198037641979962419800624198053041980607-0.121000.000150.00530shorterHepG2U2AF2
A3SSPMM1ENSG00000100417.7chr22-4198028441980397419802844198037641980530419806070.076000.006690.03730longerK562AQR
A3SSPMM1ENSG00000100417.7chr22-419799624198037641979962419800624198053041980607-0.279000.000000.00010shorterHepG2U2AF1
A3SSPMM1ENSG00000100417.7chr22-419799624198037641979962419800624198053041980607-0.119000.000860.09360shorterHepG2PCBP1
RIPMM1ENSG00000100417.7chr22-4197996241980376419799624198006241980284419803760.186000.000440.04962includedK562HNRNPK
RIPMM1ENSG00000100417.7chr22-4197996241980376419799624198006241980284419803760.055000.000510.01497includedHepG2KHSRP
RIPMM1ENSG00000100417.7chr22-4197996241980376419799624198006241980284419803760.057000.000350.00619includedHepG2NCBP2
RIPMM1ENSG00000100417.7chr22-4197996241980376419799624198006241980284419803760.078000.000000.00000includedHepG2SF3B4
RIPMM1ENSG00000100417.7chr22-4197996241980376419799624198006241980284419803760.086000.001590.01802includedHepG2RBM22
RIPMM1ENSG00000100417.7chr22-4197996241980376419799624198006241980284419803760.075000.000000.00000includedHepG2SRSF9
RIPMM1ENSG00000100417.7chr22-4197996241980376419799624198006241980284419803760.057000.000000.00034includedHepG2PTBP1
MXEPMM1ENSG00000100417.7chr22-41980284419803764198053041980607419800234198006241982079419821970.174000.010500.065841includedK562AQR
MXEPMM1ENSG00000100417.7chr22-41980530419806074198211541982197419802844198037641985722419858220.135000.003030.066691includedHepG2XRN2
MXEPMM1ENSG00000100417.7chr22-4198053041980607419821154198219741980284419803764198572241985822-0.203000.000010.002082includedK562PUM1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PMM1 is not avaliable on ENCORE database.