PMM1

General Information

Gene Name : PMM1
Gene ID : ENSG00000100417.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PMM1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PMM1	ENSG00000100417.11	3.89	8.31	6.10	ENCSR000AEF
HepG2	PMM1	ENSG00000100417.11	36.26	22.49	29.38	ENCSR985KAT
K562	PMM1	ENSG00000100417.11	20.06	14.19	17.12	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PMM1 is not avaliable on ENCORE database.

Proteins bound to RNA

PMM1 RNA is bound by 10 proteins.

CanvasJS.com

eCLIP assay for PMM1 is not avaliable on ENCORE database.

10 proteins are bound to PMM1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	41980268	41980288	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.92026	12.91190	HepG2	PRPF8
chr22	41980239	41980268	-	intron-Distal,intron-Proximal	4.39122	12.28861	HepG2	PRPF8
chr22	41980242	41980248	-	intron-Distal,intron-Proximal	6.19113	11.56697	K562	AQR
chr22	41979971	41980024	-	CDS,intron-Distal,intron-Proximal	3.85496	10.98900	HepG2	PPIG
chr22	41980248	41980285	-	intron-Distal,intron-Proximal	5.21689	10.60410	K562	AQR
chr22	41974818	41974843	-	CDS,intron-Distal	4.63226	9.28243	HepG2	PPIG
chr22	41980058	41980115	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.69963	9.04436	K562	AQR
chr22	41974843	41974887	-	CDS,intron-Distal,intron-Proximal	4.16721	8.69525	HepG2	PPIG
chr22	41973164	41973292	-	3'-UTR,intron-Distal	5.19153	8.57616	HepG2	UPF1
chr22	41972961	41973033	-	3'-UTR,intron-Distal	5.16187	8.46072	HepG2	LARP4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 30 entries

eCLIP assay for PMM1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PMM1 is not available on ENCORE database.
94 RBPs can affect the levels of PMM1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PMM1 is not available on ENCORE database.

94 RBPs can affect the gene expression of PMM1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PMM1	ENSG00000100417.7	341.66130	1733.24260	-2.34280	39.61260	37.44560	HepG2	MATR3
PMM1	ENSG00000100417.7	557.41780	1702.59470	-1.61090	30.14980	28.95770	HepG2	SRSF1
PMM1	ENSG00000100417.7	1676.52370	924.30500	0.85890	24.82890	23.63390	HepG2	SSB
PMM1	ENSG00000100417.7	594.27370	1566.63150	-1.39850	23.78730	22.48160	HepG2	PTBP1
PMM1	ENSG00000100417.7	604.38400	1539.72990	-1.34910	23.39790	21.92310	HepG2	PCBP1
PMM1	ENSG00000100417.7	682.26310	1953.25290	-1.51750	22.87940	21.51450	HepG2	AKAP1
PMM1	ENSG00000100417.7	627.97570	1631.24710	-1.37720	20.86510	19.49210	HepG2	SF3B4
PMM1	ENSG00000100417.7	558.85480	1662.55170	-1.57290	21.17250	19.39670	HepG2	EIF4B
PMM1	ENSG00000100417.7	623.16340	1385.08770	-1.15230	19.34830	18.13240	HepG2	SRSF9
PMM1	ENSG00000100417.7	667.55570	1530.15290	-1.19670	18.68720	17.41770	HepG2	TAF15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 104 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PMM1 is not available on ENCORE database.

17 RBPs can affect the splicing of PMM1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PMM1	ENSG00000100417.7	chr22	-	41985055	41985167			41982079	41982197	41985722	41985851	0.13200	0.00000	0.00003	included	HepG2	U2AF1
SE	PMM1	ENSG00000100417.7	chr22	-	41985055	41985167			41982079	41982197	41985722	41985875	0.27100	0.00000	0.00000	included	HepG2	U2AF2
A3SS	PMM1	ENSG00000100417.7	chr22	-	41979962	41980376			41979962	41980062	41980530	41980607	-0.27900	0.00000	0.00010	shorter	HepG2	U2AF1
RI	PMM1	ENSG00000100417.7	chr22	-	41979962	41980376			41979962	41980062	41980284	41980376	0.07800	0.00000	0.00000	included	HepG2	SF3B4
RI	PMM1	ENSG00000100417.7	chr22	-	41979962	41980376			41979962	41980062	41980284	41980376	0.07500	0.00000	0.00000	included	HepG2	SRSF9
RI	PMM1	ENSG00000100417.7	chr22	-	41979962	41980376			41979962	41980062	41980284	41980376	0.05700	0.00000	0.00034	included	HepG2	PTBP1
MXE	PMM1	ENSG00000100417.7	chr22	-	41980530	41980607	41982115	41982197	41980284	41980376	41985722	41985822	-0.20300	0.00001	0.00208	2included	K562	PUM1
SE	PMM1	ENSG00000100417.7	chr22	-	41985055	41985167			41982079	41982197	41985722	41985851	0.11600	0.00002	0.00425	included	HepG2	PCBP2
SE	PMM1	ENSG00000100417.7	chr22	-	41980284	41980376			41979962	41980062	41980530	41980607	-0.07100	0.00011	0.00215	excluded	HepG2	U2AF2
A3SS	PMM1	ENSG00000100417.7	chr22	-	41979962	41980376			41979962	41980062	41980530	41980607	-0.12100	0.00015	0.00530	shorter	HepG2	U2AF2

Showing 1 to 10 of 23 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PMM1

General Information

Functions

Localization

Domains (AlphaFold: PMM1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PMM1 is not avaliable on ENCORE database.

10 proteins are bound to PMM1 RNA:

eCLIP assay for PMM1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PMM1 is not available on ENCORE database.

94 RBPs can affect the gene expression of PMM1 :

The Knockdown/knockout RNA-Seq assay for PMM1 is not available on ENCORE database.

17 RBPs can affect the splicing of PMM1 :

The Knockdown/knockout RNA-Seq assay for PMM1 is not avaliable on ENCORE database.