PHF17

General Information

Gene Name       : PHF17
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PHF17)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PHF17 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PHF17 RNA is bound by 31 proteins.  







eCLIP assay for PHF17 is not avaliable on ENCORE database.





31 proteins are bound to PHF17 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr4129752877129752936+3'-UTR,5'-UTR,CDS,intron-Proximal3.203683.50696K562BUD13
chr4129784724129784804+3'-UTR,intron-Distal4.116454.30948K562LIN28B
chr4129752887129752921+3'-UTR,5'-UTR,CDS,intron-Proximal3.967583.04254K562UCHL5
chr4129784078129784152+3'-UTR,intron-Distal3.2324516.03832K562UPF1
chr4129784205129784253+3'-UTR,intron-Distal3.411277.55751K562UPF1
chr4129783969129784022+3'-UTR,intron-Distal3.794273.08314K562TARDBP
chr4129784906129784945+3'-UTR,intron-Distal3.364093.37083K562UPF1
chr4129794485129794548+3'-UTR5.146205.10303K562PABPC4
chr4129783528129783583+3'-UTR,intron-Distal6.682999.30499K562PUM2
chr4129796094129796148+3'-UTR5.436477.24744K562PUM2
chr4129784053129784195+3'-UTR,intron-Distal4.3835710.53426K562TARDBP
chr4129732956129733002+5'-UTR,intron-Distal4.173663.71735K562TIA1
chr4129731032129731134+5'-UTR,intron-Distal,intron-Proximal5.049856.22530K562AQR
chr4129732952129733002+5'-UTR,intron-Distal3.499813.90141HepG2SFPQ
chr4129773422129773432+CDS,intron-Proximal5.464547.63570K562AQR
chr4129782897129782943+CDS3.144083.34231K562RBM15
chr4129773288129773423+CDS3.912145.79938K562LIN28B
chr4129767525129767594+CDS,intron-Distal,intron-Proximal4.430964.08604HepG2PPIG
chr4129767594129767687+CDS,intron-Distal3.723454.41267HepG2PPIG
chr4129776736129776803+CDS,intron-Proximal4.842335.26064K562AQR
chr4129783057129783129+CDS4.305057.36824K562RBM15
chr4129782969129783045+CDS3.506993.34231K562RBM15
chr4129776790129776940+CDS3.977406.19451K562FXR2
chr4129783180129783220+CDS3.760083.63681K562RBM15
chr4129773330129773432+CDS,intron-Proximal3.909235.24452HepG2PPIG
chr4129783179129783255+CDS3.118983.73997K562ZNF622
chr4129773326129773439+CDS,intron-Proximal3.349893.79741HepG2GRWD1
chr4129776740129776825+CDS,intron-Proximal4.025916.87424K562BUD13
chr4129776709129776790+CDS,intron-Proximal4.908234.69961K562SF3B4
chr4129780355129780449+intron-Distal6.3697213.94931K562EIF4G2
chr4129733471129733536+intron-Distal3.847165.59508HepG2NKRF
chr4129758565129758640+intron-Distal3.794273.08314K562TARDBP
chr4129780402129780469+intron-Distal3.628635.63970K562TARDBP
chr4129780724129780810+intron-Distal4.595845.71021K562TARDBP
chr4129780469129780688+intron-Distal5.6989214.58004K562TARDBP
chr4129733356129733401+intron-Distal4.202774.14056K562EWSR1
chr4129733257129733300+intron-Distal3.569964.25264K562NONO
chr4129733324129733405+intron-Distal4.311513.84029K562DROSHA
chr4129732782129732846+intron-Distal3.437413.46580HepG2CSTF2T
chr4129778652129778754+intron-Distal,intron-Proximal3.161424.37001K562EFTUD2
chr4129776214129776305+intron-Distal4.696246.36848HepG2SUGP2
chr4129732141129732202+intron-Distal4.406224.48497K562NONO
chr4129732577129732633+intron-Distal,intron-Proximal4.369213.57893K562EWSR1
chr4129733326129733424+intron-Distal3.388625.80077K562CSTF2T
chr4129733448129733528+intron-Distal3.998097.48999K562NONO
chr4129779214129779338+intron-Distal5.714955.62492K562EIF4G2
chr4129778636129778775+intron-Distal,intron-Proximal4.6319610.76443K562PRPF8
chr4129732235129732305+intron-Distal4.723706.16396K562NONO
chr4129779222129779363+intron-Distal3.501796.83632K562TARDBP
chr4129733333129733384+intron-Distal4.249844.10387HepG2SFPQ
chr4129732572129732672+intron-Distal,intron-Proximal5.4334510.23711K562NONO
chr4129733461129733546+intron-Distal3.549166.58651HepG2CSTF2T
chr4129733387129733431+intron-Distal4.837126.64417K562NONO
chr4129732593129732687+intron-Distal,intron-Proximal3.980083.28544HepG2DGCR8
chr4129780774129780828+intron-Distal5.652746.10540K562EIF4G2
chr4129758483129758547+intron-Distal3.762203.08314K562TARDBP
chr4129733325129733387+intron-Distal5.280328.09947K562NONO
chr4129776310129776377+intron-Distal4.299465.04879HepG2SUGP2
chr4129732232129732308+intron-Distal4.324244.42197K562EWSR1
chr4129776185129776316+intron-Distal4.315003.72005K562MATR3
chr4129733782129733817+intron-Distal3.386893.77567K562NONO
chr4129772545129772625+intron-Distal4.051783.66668K562KHSRP
chr4129780334129780489+intron-Distal4.360235.29045K562IGF2BP1
chr4129732948129732997+intron-Distal4.193486.75450K562NONO
chr4129737300129737496+intron-Distal,intron-Proximal5.2689410.95353K562KHSRP
chr4129732582129732654+intron-Distal,intron-Proximal4.009483.85108HepG2GTF2F1
chr4129769045129769102+intron-Distal4.345934.78128K562HNRNPM
chr4129773432129773465+intron-Proximal4.496607.53589K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PHF17 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PHF17 is not available on ENCORE database.

  • 96 RBPs can affect the levels of PHF17.  








The Knockdown/knockout RNA-Seq assay for PHF17 is not available on ENCORE database.





96 RBPs can affect the gene expression of PHF17 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PHF17ENSG00000077684.11431.93980673.29430-0.640408.601807.65160HepG2ACO1
PHF17ENSG00000077684.11516.17840701.98610-0.443603.148301.64680HepG2ATP5C1
PHF17ENSG00000077684.11619.476201128.96000-0.8659018.8334017.34040HepG2AUH
PHF17ENSG00000077684.11471.68140693.57600-0.556202.945201.97470HepG2BCCIP
PHF17ENSG00000077684.11323.10010602.72900-0.899507.015105.66210HepG2BCLAF1
PHF17ENSG00000077684.11317.62250459.10250-0.531503.401902.74540HepG2BOP1
PHF17ENSG00000077684.11464.04390690.00780-0.572405.462604.42560HepG2CALR
PHF17ENSG00000077684.11444.96270673.23530-0.597407.931806.91630HepG2CKAP4
PHF17ENSG00000077684.11666.46950946.95990-0.506806.145805.25930HepG2CELF1
PHF17ENSG00000077684.11744.883701018.18140-0.450906.450505.38590HepG2DAZAP1
PHF17ENSG00000077684.11410.23700579.20950-0.497604.116002.72200HepG2DDX1
PHF17ENSG00000077684.11420.86360577.18580-0.455703.005402.30110HepG2DDX21
PHF17ENSG00000077684.11253.06450681.89500-1.4300016.0748014.42210HepG2DDX55
PHF17ENSG00000077684.11433.23190612.17380-0.498803.480602.35520HepG2DDX5
PHF17ENSG00000077684.11384.25580622.89720-0.696904.913804.11170HepG2DDX6
PHF17ENSG00000077684.11479.19680644.18280-0.426903.747102.98180HepG2DKC1
PHF17ENSG00000077684.11356.65960562.93710-0.658408.427007.36530HepG2DNAJC2
PHF17ENSG00000077684.11462.24290614.60820-0.411002.254301.42060HepG2EEF2
PHF17ENSG00000077684.11376.75750512.38730-0.443602.531801.46980HepG2EFTUD2
PHF17ENSG00000077684.11347.55420598.82870-0.784906.454705.57030HepG2EIF2S1
PHF17ENSG00000077684.11427.80010661.78700-0.629404.322303.52730HepG2EIF4A3
PHF17ENSG00000077684.11935.49640644.321700.537903.144202.41390HepG2EIF4B
PHF17ENSG00000077684.11812.872001004.52690-0.305402.850902.00350HepG2EIF4G1
PHF17ENSG00000077684.11415.48820549.84220-0.404202.536501.43730HepG2FASTKD2
PHF17ENSG00000077684.11845.53300657.539900.362702.208201.41790HepG2G3BP2
PHF17ENSG00000077684.11297.78610477.73710-0.681904.410103.61400HepG2GPKOW
PHF17ENSG00000077684.11375.44460573.38790-0.610904.708303.89490HepG2HNRNPA1
PHF17ENSG00000077684.11657.95210935.75380-0.508106.256304.94700HepG2HNRNPA2B1
PHF17ENSG00000077684.11433.67340637.78990-0.556504.229403.38550HepG2HNRNPC
PHF17ENSG00000077684.11472.49820583.39370-0.304202.374001.70610HepG2HNRNPF
PHF17ENSG00000077684.11703.08450927.47530-0.399604.968804.08570HepG2HNRNPL
PHF17ENSG00000077684.11492.71770633.57300-0.362703.103002.46330HepG2HNRNPU
PHF17ENSG00000077684.11405.12000629.60320-0.636104.582503.73350HepG2IGF2BP2
PHF17ENSG00000077684.11494.41600647.17360-0.388403.973503.11070HepG2ILF2
PHF17ENSG00000077684.11424.74600966.97490-1.186908.792507.30780HepG2LARP4
PHF17ENSG00000077684.11451.28380635.73160-0.494403.788302.84490HepG2MSI2
PHF17ENSG00000077684.11362.91780625.98440-0.786503.803902.50580HepG2NONO
PHF17ENSG00000077684.11390.13630573.97910-0.557002.434401.61240HepG2PABPC1
PHF17ENSG00000077684.11513.32320627.12650-0.288902.042901.30610HepG2PARN
PHF17ENSG00000077684.11442.03200654.37330-0.566003.076401.98390HepG2PCBP2
PHF17ENSG00000077684.11225.55400526.21280-1.2222011.8851010.37660HepG2PRPF8
PHF17ENSG00000077684.11546.90770963.78780-0.8174010.825809.75010HepG2PUF60
PHF17ENSG00000077684.11756.934301023.11390-0.434706.292305.47390HepG2PUM1
PHF17ENSG00000077684.11833.548501022.36000-0.294602.204501.60320HepG2PUM2
PHF17ENSG00000077684.11902.25350658.841800.453504.318303.56330HepG2QKI
PHF17ENSG00000077684.11446.52110631.49180-0.500001.978301.37270HepG2RAVER1
PHF17ENSG00000077684.11614.350601083.37790-0.8184014.4890013.49210HepG2RBM22
PHF17ENSG00000077684.11880.31330606.529000.537303.146201.50710HepG2RBM47
PHF17ENSG00000077684.11905.46350630.522200.522006.429705.54510HepG2RECQL
PHF17ENSG00000077684.11290.66370628.53470-1.1126014.5047013.17400HepG2RPLP0
PHF17ENSG00000077684.11164.04540485.47780-1.5653021.9877020.51730HepG2RPS19
PHF17ENSG00000077684.11431.09510709.48240-0.718806.510105.31290HepG2RPS2
PHF17ENSG00000077684.11374.09870630.46160-0.753005.240804.13690HepG2RPS3A
PHF17ENSG00000077684.11248.41810520.55170-1.067308.658407.37230HepG2RRP9
PHF17ENSG00000077684.11317.25660487.26770-0.619104.155703.00870HepG2SERBP1
PHF17ENSG00000077684.11767.24810924.14410-0.268402.430801.76760HepG2SLBP
PHF17ENSG00000077684.11476.48200657.97840-0.465605.268504.42960HepG2SMN1
PHF17ENSG00000077684.11640.480101223.63730-0.9340023.2759022.19330HepG2SRFBP1
PHF17ENSG00000077684.11915.93570661.075500.470305.454104.84680HepG2SRSF1
PHF17ENSG00000077684.11442.05320573.18270-0.374803.220202.47550HepG2SRSF7
PHF17ENSG00000077684.11762.631001062.41010-0.478306.670205.93870HepG2SSB
PHF17ENSG00000077684.11807.669501082.23500-0.422205.786904.94720HepG2SUCLG1
PHF17ENSG00000077684.11330.71630530.40650-0.681506.303704.92210HepG2SUPT6H
PHF17ENSG00000077684.11351.52260678.86990-0.949507.840306.79620HepG2SUPV3L1
PHF17ENSG00000077684.111054.11970594.179500.8270014.5327013.39670HepG2TAF15
PHF17ENSG00000077684.11291.37110455.05550-0.643203.659602.53260HepG2TFIP11
PHF17ENSG00000077684.11712.46940545.992200.383802.884302.03210HepG2TIA1
PHF17ENSG00000077684.11207.78980615.62770-1.5669028.8795027.57970HepG2TIAL1
PHF17ENSG00000077684.11316.47760621.13840-0.9728016.2149015.00460HepG2TRIM56
PHF17ENSG00000077684.11515.46930671.94660-0.382502.193501.62760HepG2U2AF1
PHF17ENSG00000077684.11335.49590663.95400-0.984802.772801.78240HepG2U2AF2
PHF17ENSG00000077684.11549.00230996.67730-0.860308.216506.74380HepG2UBE2L3
PHF17ENSG00000077684.11242.47010401.06620-0.726004.690803.69750HepG2UCHL5
PHF17ENSG00000077684.11380.53920602.74100-0.663508.189307.09300HepG2UPF1
PHF17ENSG00000077684.11418.81870621.77900-0.570102.557301.59530HepG2UPF2
PHF17ENSG00000077684.11450.42550581.92200-0.369502.853602.24870HepG2UTP3
PHF17ENSG00000077684.11482.52700668.27130-0.469802.403401.72350HepG2XRN2
PHF17ENSG00000077684.11448.01620658.85800-0.556406.700005.72940HepG2ZC3H8
PHF17ENSG00000077684.11369.88610662.89900-0.8417014.3207013.31720HepG2ZNF622
PHF17ENSG00000077684.112606.670501631.372500.6760019.2624017.88190K562AGGF1
PHF17ENSG00000077684.112258.984001697.520700.412104.362203.53500K562AKAP8L
PHF17ENSG00000077684.111094.69610873.439800.325702.081901.33100K562BOP1
PHF17ENSG00000077684.111539.385901228.447800.325403.045001.45630K562CEBPZ
PHF17ENSG00000077684.113945.777102948.720200.420106.800405.29060K562CELF1
PHF17ENSG00000077684.111776.316901411.964200.331103.935602.47470K562DDX21
PHF17ENSG00000077684.112077.692501765.801100.234602.659202.01840K562DDX47
PHF17ENSG00000077684.113293.488202398.419400.457409.585607.87250K562EIF4G2
PHF17ENSG00000077684.111436.071301103.997800.379304.335802.66520K562EWSR1
PHF17ENSG00000077684.111564.696701211.506700.369004.342002.91650K562GLRX3
PHF17ENSG00000077684.111821.232501468.633800.310302.830101.74520K562HNRNPA1
PHF17ENSG00000077684.11731.24020927.28190-0.342702.511101.93950K562HNRNPC
PHF17ENSG00000077684.112449.916501801.480900.443404.933003.77190K562KIF1C
PHF17ENSG00000077684.111945.323201414.553900.459602.510301.67920K562NAA15
PHF17ENSG00000077684.111685.859701415.282000.252303.557202.72140K562NSUN2
PHF17ENSG00000077684.111396.264901125.133000.311402.795301.98950K562POLR2G
PHF17ENSG00000077684.11962.136901212.86350-0.334102.202701.52960K562PRPF8
PHF17ENSG00000077684.112522.541201683.448700.583407.078506.25570K562PUS1
PHF17ENSG00000077684.112424.170501640.288700.563406.969206.05620K562RBM15
PHF17ENSG00000077684.111093.459501418.02480-0.375002.670501.68720K562RPS3
PHF17ENSG00000077684.111672.905501430.682300.225602.606901.69370K562SRPK2
PHF17ENSG00000077684.111642.568401260.070000.382304.986103.39800K562SRSF7
PHF17ENSG00000077684.111099.982301433.41350-0.382003.003302.26650K562TARDBP
PHF17ENSG00000077684.111538.687801117.954600.460705.619104.47460K562U2AF2
PHF17ENSG00000077684.11946.607801242.90230-0.392902.877401.83450K562UCHL5
PHF17ENSG00000077684.111256.584101500.64950-0.256102.983702.23730K562UPF1
PHF17ENSG00000077684.111553.983601335.233200.218802.354201.56880K562WDR43
PHF17ENSG00000077684.112766.249602230.334600.310602.777701.91330K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PHF17 is not available on ENCORE database.





2 RBPs can affect the splicing of PHF17 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXEPHF17ENSG00000077684.11chr4+129764107129764193129767529129767687129752887129752965129770134129770322-0.167000.004120.056472includedK562U2AF1
MXEPHF17ENSG00000077684.11chr4+1297641071297641931297675291297676871297528871297529651297701341297703220.124000.004370.058381includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PHF17 is not avaliable on ENCORE database.