PCBP1-AS1

General Information

Gene Name       : PCBP1-AS1
Gene ID             : ENSG00000179818.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PCBP1-AS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PCBP1-AS1ENSG00000179818.1325.1622.8824.02ENCSR000AEF
HepG2PCBP1-AS1ENSG00000179818.1329.0133.5931.30ENCSR985KAT
K562PCBP1-AS1ENSG00000179818.1314.8423.9719.41ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PCBP1-AS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PCBP1-AS1 RNA is bound by 19 proteins.  







eCLIP assay for PCBP1-AS1 is not avaliable on ENCORE database.





19 proteins are bound to PCBP1-AS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr27031267770312690-intron-Distal,intron-Proximal3.875688.08603HepG2BCLAF1
chr27031400170314092-intron-Distal3.089075.50895HepG2NCBP2
chr27031267770312758-intron-Distal,intron-Proximal3.1575312.61608HepG2PPIG
chr27025249370252537-intron-Distal4.786383.91475K562PTBP1
chr27028270770282809-intron-Distal,intron-Proximal4.657486.53456HepG2PCBP2
chr27021562270215752-intron-Distal3.127913.89889HepG2HNRNPL
chr27027389370273941-intron-Distal3.714573.55754HepG2U2AF2
chr27029247570292525-intron-Distal3.209753.63132HepG2HNRNPC
chr27029566870295737-intron-Distal4.029845.07626HepG2PTBP1
chr27030994070309981-intron-Distal3.127214.83813HepG2ILF3
chr27031276370312815-intron-Distal,intron-Proximal6.4394110.32912HepG2SF3B4
chr27029011970290189-intron-Distal4.558415.16513HepG2HNRNPM
chr27030664970306721-intron-Distal3.130663.00914HepG2PTBP1
chr27027421070274260-intron-Distal3.211847.81279HepG2QKI
chr27025249570252535-intron-Distal3.349553.59803HepG2PTBP1
chr27030588270305961-intron-Distal3.060274.36205HepG2SUGP2
chr27025237970252437-intron-Distal3.992843.74583HepG2PTBP1
chr27020773170207821-intron-Distal3.965323.50357HepG2QKI
chr27027426070274342-intron-Distal4.0261613.44140HepG2QKI
chr27027549970275551-intron-Distal3.166063.90616HepG2HNRNPC
chr27026340170263500-intron-Distal4.1686111.27651HepG2QKI
chr27027802670278082-intron-Distal,intron-Proximal4.460535.42763HepG2HNRNPC
chr27031267670312765-intron-Distal,intron-Proximal3.293897.47194HepG2GRWD1
chr27020911870209187-intron-Distal4.525695.80675K562EIF4G2
chr27030737870307428-intron-Distal5.262055.80475HepG2XPO5
chr27027923870279356-intron-Distal4.248374.52538HepG2PTBP1
chr27027836370278437-intron-Distal,intron-Proximal3.580344.34695HepG2BCLAF1
chr27025431970254395-intron-Distal3.881213.54208HepG2SUGP2
chr27027831070278441-intron-Distal,intron-Proximal3.362299.44988HepG2PPIG
chr27031348070313553-intron-Distal,intron-Proximal3.877079.70703HepG2TIA1
chr27031074270310820-intron-Distal,intron-Proximal3.697814.88141HepG2GRWD1
chr27027840470278458-intron-Distal,intron-Proximal3.8926415.41646HepG2U2AF2
chr27027827570278308-intron-Distal,intron-Proximal4.195098.29740HepG2TIAL1
chr27030631670306359-intron-Distal4.122294.36036HepG2SUGP2
chr27030487570304969-intron-Distal3.891713.38413HepG2HNRNPC
chr27031348770313553-intron-Distal,intron-Proximal4.0200010.72341HepG2TIAL1
chr27025478270254863-intron-Distal4.452554.17759HepG2QKI
chr27029375470293873-intron-Distal4.405115.02158HepG2ILF3
chr27027830870278326-intron-Distal,intron-Proximal4.894806.84364HepG2TIAL1
chr27031276570312814-intron-Distal,intron-Proximal3.8019020.34435HepG2SF3A3
chr27031364370313697-intron-Distal,intron-Proximal3.292178.40779HepG2HNRNPC
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PCBP1-AS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PCBP1-AS1 is not available on ENCORE database.

  • 90 RBPs can affect the levels of PCBP1-AS1.  








The Knockdown/knockout RNA-Seq assay for PCBP1-AS1 is not available on ENCORE database.





90 RBPs can affect the gene expression of PCBP1-AS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PCBP1-AS1ENSG00000179818.9765.09660511.621600.580504.265603.11380HepG2ABCF1
PCBP1-AS1ENSG00000179818.9284.17760476.31630-0.745108.534807.58740HepG2ACO1
PCBP1-AS1ENSG00000179818.9562.43300373.575600.590204.378803.15880HepG2ADAR
PCBP1-AS1ENSG00000179818.9247.67270528.58060-1.093709.229708.32130HepG2AKAP1
PCBP1-AS1ENSG00000179818.9287.93140504.44740-0.809006.118104.60130HepG2AKAP8
PCBP1-AS1ENSG00000179818.9628.07520497.852400.335102.474801.81860HepG2AUH
PCBP1-AS1ENSG00000179818.9553.19630357.674900.629004.794503.63960HepG2BCLAF1
PCBP1-AS1ENSG00000179818.91189.14680373.648001.6701038.4528036.68790HepG2BOP1
PCBP1-AS1ENSG00000179818.9272.12640551.22100-1.018407.007505.79350HepG2CNOT7
PCBP1-AS1ENSG00000179818.9497.24510645.27720-0.376003.115302.44090HepG2CELF1
PCBP1-AS1ENSG00000179818.9892.25200693.876000.362704.057503.18780HepG2DAZAP1
PCBP1-AS1ENSG00000179818.9557.23890386.829700.526503.945902.84290HepG2DDX24
PCBP1-AS1ENSG00000179818.9317.43840434.94900-0.454402.069501.52810HepG2DDX6
PCBP1-AS1ENSG00000179818.9521.63500362.823900.523703.761802.62680HepG2DHX30
PCBP1-AS1ENSG00000179818.9617.24360455.705000.437603.841803.06930HepG2DKC1
PCBP1-AS1ENSG00000179818.9264.56190376.18600-0.507803.433402.65560HepG2DNAJC21
PCBP1-AS1ENSG00000179818.9922.19910462.098500.9968011.147209.89230HepG2EIF4A3
PCBP1-AS1ENSG00000179818.9899.00710684.512800.393203.933402.96660HepG2EIF4G1
PCBP1-AS1ENSG00000179818.9622.84240443.279200.490603.557702.32590HepG2ESF1
PCBP1-AS1ENSG00000179818.91016.20860571.611200.8300015.6354014.39760HepG2ETF1
PCBP1-AS1ENSG00000179818.9257.88860376.81340-0.547103.502002.23910HepG2FASTKD2
PCBP1-AS1ENSG00000179818.9354.52840516.64250-0.543302.549401.80720HepG2FIP1L1
PCBP1-AS1ENSG00000179818.9422.06850313.163800.430502.461601.71990HepG2FUBP3
PCBP1-AS1ENSG00000179818.9782.06180459.139200.768307.419905.95040HepG2G3BP2
PCBP1-AS1ENSG00000179818.9413.37420227.482500.861606.402205.04280HepG2GEMIN5
PCBP1-AS1ENSG00000179818.9725.15570422.435500.779507.887706.76380HepG2HNRNPC
PCBP1-AS1ENSG00000179818.9317.41990419.64340-0.402802.906902.28680HepG2HNRNPU
PCBP1-AS1ENSG00000179818.9307.53520428.65360-0.479104.197003.31210HepG2ILF2
PCBP1-AS1ENSG00000179818.9371.14290537.31590-0.533802.632501.35390HepG2ILF3
PCBP1-AS1ENSG00000179818.9949.63370536.705600.823107.122105.77700HepG2LARP4
PCBP1-AS1ENSG00000179818.9255.96800380.67050-0.572603.654102.34730HepG2LARP7
PCBP1-AS1ENSG00000179818.9749.03550466.383300.683405.699904.77070HepG2MAGOH
PCBP1-AS1ENSG00000179818.9324.53970468.99640-0.531202.771502.13990HepG2MATR3
PCBP1-AS1ENSG00000179818.91197.76250480.046201.3190020.6097018.98410HepG2NCBP2
PCBP1-AS1ENSG00000179818.9527.00090688.04360-0.384703.152402.34020HepG2NOL12
PCBP1-AS1ENSG00000179818.9340.29180503.70370-0.565802.420801.60110HepG2PABPC1
PCBP1-AS1ENSG00000179818.9535.39820373.259900.520304.777803.79260HepG2PRPF4
PCBP1-AS1ENSG00000179818.9308.98470400.08800-0.372802.164501.66940HepG2PTBP1
PCBP1-AS1ENSG00000179818.9396.63710656.78540-0.727607.440206.52440HepG2PUF60
PCBP1-AS1ENSG00000179818.9497.60180696.69200-0.485504.307603.48130HepG2PUM2
PCBP1-AS1ENSG00000179818.9300.48010472.39570-0.652702.827302.11560HepG2RAVER1
PCBP1-AS1ENSG00000179818.9422.66290642.55520-0.604305.550704.38740HepG2RBM15
PCBP1-AS1ENSG00000179818.9612.49540393.239500.639205.894104.94290HepG2RBM25
PCBP1-AS1ENSG00000179818.9344.84440532.26950-0.626203.523701.80330HepG2RBM47
PCBP1-AS1ENSG00000179818.9532.63660400.511100.411202.170901.55710HepG2RPLP0
PCBP1-AS1ENSG00000179818.9275.64840432.16170-0.648704.759103.33600HepG2RPS5
PCBP1-AS1ENSG00000179818.9322.62140513.69660-0.671103.486301.77130HepG2RTF1
PCBP1-AS1ENSG00000179818.9215.20750373.71700-0.796207.703006.70830HepG2SAFB2
PCBP1-AS1ENSG00000179818.9502.78950769.95160-0.614803.919803.11130HepG2SF3A3
PCBP1-AS1ENSG00000179818.9462.10140629.72500-0.446504.529703.66650HepG2SLBP
PCBP1-AS1ENSG00000179818.9304.63890435.82730-0.516704.487503.70370HepG2SMN1
PCBP1-AS1ENSG00000179818.9275.41880481.12650-0.804804.448603.21420HepG2SMNDC1
PCBP1-AS1ENSG00000179818.9776.12840539.607600.524306.288405.61680HepG2SRFBP1
PCBP1-AS1ENSG00000179818.9618.32090434.768100.508004.779104.20040HepG2SRSF1
PCBP1-AS1ENSG00000179818.9842.66650395.215201.0922011.059408.94940HepG2SRSF3
PCBP1-AS1ENSG00000179818.9494.71520648.46250-0.390403.412702.72980HepG2SRSF5
PCBP1-AS1ENSG00000179818.9538.87180365.228600.561004.633103.76720HepG2SRSF7
PCBP1-AS1ENSG00000179818.9771.15040468.500700.718907.877307.09780HepG2SSB
PCBP1-AS1ENSG00000179818.9530.99610737.49550-0.473905.368004.55340HepG2SUCLG1
PCBP1-AS1ENSG00000179818.9627.82600390.809400.683807.752406.89010HepG2TAF15
PCBP1-AS1ENSG00000179818.9267.11980359.07630-0.426802.382901.60520HepG2TIA1
PCBP1-AS1ENSG00000179818.9318.20880407.80020-0.357901.879201.44970HepG2TIAL1
PCBP1-AS1ENSG00000179818.9318.30880411.40460-0.370102.455601.91730HepG2TRIM56
PCBP1-AS1ENSG00000179818.9772.22240442.023000.804808.265107.18020HepG2U2AF1
PCBP1-AS1ENSG00000179818.9425.71960679.13740-0.673804.512203.42500HepG2UBE2L3
PCBP1-AS1ENSG00000179818.9420.17740238.003900.819906.959005.74560HepG2UCHL5
PCBP1-AS1ENSG00000179818.9567.60940368.998100.621203.718002.53880HepG2UPF2
PCBP1-AS1ENSG00000179818.9685.01560396.558200.788507.518406.33770HepG2XRN2
PCBP1-AS1ENSG00000179818.9448.90900750.98220-0.7424012.8149011.85560HepG2ZNF622
PCBP1-AS1ENSG00000179818.9140.51090276.01620-0.974107.413506.54980K562AGGF1
PCBP1-AS1ENSG00000179818.9201.88460287.20130-0.508502.534601.90840K562AKAP8L
PCBP1-AS1ENSG00000179818.9478.85630304.093800.655004.104303.41720K562AQR
PCBP1-AS1ENSG00000179818.9215.61750301.33190-0.482902.832501.90950K562ATP5C1
PCBP1-AS1ENSG00000179818.9505.96110229.511501.140402.532501.69880K562BOP1
PCBP1-AS1ENSG00000179818.9329.82850244.032000.434502.060301.37460K562CPSF6
PCBP1-AS1ENSG00000179818.9309.07650214.718600.525402.471601.50010K562EIF3D
PCBP1-AS1ENSG00000179818.9225.43530150.831900.579702.702101.89100K562EIF4A3
PCBP1-AS1ENSG00000179818.9498.82010379.480400.394402.250201.40020K562EIF4G2
PCBP1-AS1ENSG00000179818.9214.99720141.822000.600102.484401.42420K562FKBP4
PCBP1-AS1ENSG00000179818.9489.77510248.305700.979904.526303.42940K562FMR1
PCBP1-AS1ENSG00000179818.9324.57220210.465400.624903.386702.36760K562FTO
PCBP1-AS1ENSG00000179818.9226.39510156.859100.529302.500601.91910K562FXR1
PCBP1-AS1ENSG00000179818.9443.72100163.463901.4406017.2661015.85500K562HNRNPC
PCBP1-AS1ENSG00000179818.9139.15160218.45370-0.650702.566901.59060K562IGF2BP2
PCBP1-AS1ENSG00000179818.9366.47300198.951300.881205.163503.83490K562KRR1
PCBP1-AS1ENSG00000179818.9285.48630185.595600.621204.035903.07420K562MTPAP
PCBP1-AS1ENSG00000179818.9358.46040150.612701.2509012.6294010.11490K562NCBP2
PCBP1-AS1ENSG00000179818.9310.84140206.212000.592004.061803.17650K562NSUN2
PCBP1-AS1ENSG00000179818.9111.77020195.08810-0.803603.230702.41980K562PRPF8
PCBP1-AS1ENSG00000179818.9191.35680277.52530-0.536402.880202.27670K562RBM15
PCBP1-AS1ENSG00000179818.9124.70580198.76680-0.672502.415401.65450K562RPS19
PCBP1-AS1ENSG00000179818.9311.69660208.470600.580203.797102.72000K562SRPK2
PCBP1-AS1ENSG00000179818.9151.95960213.48270-0.490402.025801.33240K562TIA1
PCBP1-AS1ENSG00000179818.9370.95280218.651100.762506.889905.81370K562UPF1
PCBP1-AS1ENSG00000179818.9258.59710187.092600.466902.203001.42240K562WDR3
PCBP1-AS1ENSG00000179818.9308.82460194.555900.666505.122704.00140K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PCBP1-AS1 is not available on ENCORE database.





13 RBPs can affect the splicing of PCBP1-AS1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPCBP1-AS1ENSG00000179818.9chr2-703106697031081970278334702784377031267870312756-0.234000.004520.06989excludedHepG2U2AF1
SEPCBP1-AS1ENSG00000179818.9chr2-703106387031081970278334702784377031267870312756-0.282000.000080.00161excludedHepG2U2AF2
SEPCBP1-AS1ENSG00000179818.9chr2-703129477031303570312678703127567031325570313414-0.445000.000690.01901excludedHepG2SRSF1
SEPCBP1-AS1ENSG00000179818.9chr2-7031066970310819702783347027843770312678703127560.342000.000550.02348includedK562TARDBP
SEPCBP1-AS1ENSG00000179818.9chr2-7031063870310819702783347027843770312678703127560.289000.000470.09408includedHepG2EIF3D
SEPCBP1-AS1ENSG00000179818.9chr2-7031294770313035703126787031275670313255703134140.538000.006410.08431includedK562HNRNPC
A5SSPCBP1-AS1ENSG00000179818.9chr2-7031063870310819703106697031081970278334702784370.726000.000510.03380longerHepG2SRSF1
A5SSPCBP1-AS1ENSG00000179818.9chr2-703129477031340570313255703134057031267870312756-0.427000.000910.05354shorterHepG2SRSF1
MXEPCBP1-AS1ENSG00000179818.9chr2-7028677470286812703106387031081970282845702830427031267870312756-0.684000.000080.004962includedK562PTBP1
MXEPCBP1-AS1ENSG00000179818.9chr2-7028086270280924702828457028304270278334702784377028677470286812-0.514000.004990.077722includedHepG2SRSF1
MXEPCBP1-AS1ENSG00000179818.9chr2-7028677470286812703106697031081970278334702784377031267870312756-0.510000.000840.017072includedK562SRSF1
MXEPCBP1-AS1ENSG00000179818.9chr2-7028677470286812703106387031081970278334702784377031267870312756-0.502000.001240.022342includedK562SRSF1
MXEPCBP1-AS1ENSG00000179818.9chr2-70286774702868127031063870310819702828457028304270312678703127560.307000.000230.041601includedHepG2SMNDC1
MXEPCBP1-AS1ENSG00000179818.9chr2-7028284570283042703106387031081970278334702784377031267870312756-0.166000.002320.089702includedK562UTP18
MXEPCBP1-AS1ENSG00000179818.9chr2-7028677470286812703106697031081970278334702784377031267870312756-0.107000.012610.065272includedHepG2U2AF2
MXEPCBP1-AS1ENSG00000179818.9chr2-7028677470286812703106387031081970278334702784377031267870312756-0.104000.010440.055722includedHepG2U2AF2
MXEPCBP1-AS1ENSG00000179818.9chr2-7028677470286812703106387031081970282845702830427031267870312756-0.145000.001020.019342includedHepG2HNRNPUL1
MXEPCBP1-AS1ENSG00000179818.9chr2-70280862702809247028284570283042702783347027843770286774702868120.563000.002570.057851includedK562SBDS
MXEPCBP1-AS1ENSG00000179818.9chr2-7028677470286812703106387031081970282845702830427031267870312756-0.161000.000950.051542includedHepG2LARP4
MXEPCBP1-AS1ENSG00000179818.9chr2-7028677470286812703106387031081970282845702830427031267870312756-0.417000.002160.094832includedK562HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PCBP1-AS1 is not avaliable on ENCORE database.