PATL1

General Information

Gene Name       : PATL1
Gene ID             : ENSG00000166889.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PATL1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PATL1ENSG00000166889.1345.0442.1943.61ENCSR000AEF
HepG2PATL1ENSG00000166889.1318.6524.2721.46ENCSR985KAT
K562PATL1ENSG00000166889.1331.3832.2731.83ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PATL1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PATL1 RNA is bound by 18 proteins.  







eCLIP assay for PATL1 is not avaliable on ENCORE database.





18 proteins are bound to PATL1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr115940571859405766-3'-UTR,intron-Distal4.207983.98716K562IGF2BP1
chr115940500859405053-3'-UTR,intron-Distal4.065683.39506K562IGF2BP2
chr115940470059404785-3'-UTR,intron-Distal3.681575.02143K562IGF2BP2
chr115940468359404793-3'-UTR,intron-Distal4.439774.08466HepG2IGF2BP1
chr115940550259405570-3'-UTR,intron-Distal5.069668.17201HepG2PCBP2
chr115940500459405125-3'-UTR,intron-Distal4.7421011.26012K562IGF2BP1
chr115940520859405250-3'-UTR,intron-Distal3.203787.66158K562PUM2
chr115940464959404718-3'-UTR,intron-Distal3.662926.48440K562IGF2BP1
chr115940680059406866-CDS,intron-Distal,intron-Proximal3.579373.95921HepG2U2AF2
chr115941028959410354-CDS,intron-Distal,intron-Proximal3.317884.38107K562AQR
chr115942678759426857-CDS,intron-Distal4.134605.94293HepG2BCLAF1
chr115941688159416966-CDS,intron-Distal,intron-Proximal4.316075.84589K562EFTUD2
chr115942691859426940-CDS,intron-Distal3.029954.30683K562BUD13
chr115942689359426942-CDS,intron-Distal4.3458411.72604K562ZNF622
chr115941535959415428-CDS,intron-Distal,intron-Proximal3.427227.98670K562SF3B4
chr115941691059416954-CDS,intron-Distal,intron-Proximal3.062333.04831K562RBM15
chr115941901659419045-CDS,intron-Distal,intron-Proximal3.023915.38953K562ZNF622
chr115941526159415314-CDS,intron-Distal3.219154.31505K562U2AF2
chr115942147259421543-CDS,intron-Distal3.369223.15019HepG2IGF2BP1
chr115941995459420051-CDS,intron-Distal3.105654.61799HepG2BCLAF1
chr115942145759421467-CDS,intron-Distal4.113666.29174K562ZNF622
chr115942044359420488-CDS,intron-Distal3.288744.38519K562BUD13
chr115943433959434423-CDS,intron-Distal3.363218.58389K562DDX24
chr115942043159420489-CDS,intron-Distal4.1248614.20955K562ZNF622
chr115942037959420431-CDS,intron-Distal4.1532111.38767K562ZNF622
chr115942673959426776-CDS,intron-Distal4.111724.07825K562YBX3
chr115941999059420054-CDS,intron-Distal3.854288.66868K562BUD13
chr115942394459424020-CDS,intron-Distal,intron-Proximal4.580483.86479HepG2PRPF8
chr115942404459424066-CDS,intron-Distal3.395833.43213K562UCHL5
chr115942393059423997-CDS,intron-Distal,intron-Proximal4.135685.99968K562PRPF8
chr115942315159423211-CDS,intron-Distal3.324806.67395K562DDX24
chr115943432959434407-CDS,intron-Distal3.9414315.58376K562ZNF622
chr115942687959426940-CDS,intron-Distal4.102545.65086HepG2BCLAF1
chr115941023759410347-intron-Distal,intron-Proximal4.163367.05443K562KHSRP
chr115941024159410336-intron-Distal,intron-Proximal5.017015.90968K562RBM22
chr115941025459410302-intron-Distal,intron-Proximal3.559684.35635K562PRPF8
chr115941157059411677-intron-Distal3.494746.59733K562KHSRP
chr115941842259418505-intron-Distal3.666843.02234K562KHSRP
chr115942291359422995-intron-Distal,intron-Proximal5.116076.83960K562AQR
chr115940687359406943-intron-Distal,intron-Proximal3.740907.62845K562SF3B4
chr115941816659418210-intron-Distal,intron-Proximal4.082406.80869K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PATL1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PATL1 is not available on ENCORE database.

  • 90 RBPs can affect the levels of PATL1.  








The Knockdown/knockout RNA-Seq assay for PATL1 is not available on ENCORE database.





90 RBPs can affect the gene expression of PATL1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PATL1ENSG00000166889.13919.649201334.81470-0.5375010.054209.04400HepG2ACO1
PATL1ENSG00000166889.131078.409101409.49130-0.386302.344801.85080HepG2AKAP1
PATL1ENSG00000166889.131452.521201930.71470-0.410603.039201.94810HepG2AKAP8
PATL1ENSG00000166889.131130.729601341.04260-0.246102.418401.69520HepG2AKAP8L
PATL1ENSG00000166889.13868.854501166.23450-0.424703.061702.23690HepG2ASCC1
PATL1ENSG00000166889.132262.545701818.732400.314902.703501.31500HepG2ATP5C1
PATL1ENSG00000166889.13683.35660936.72240-0.455002.861701.94690HepG2BCLAF1
PATL1ENSG00000166889.13934.455801674.96100-0.8419013.2871012.11070HepG2BOP1
PATL1ENSG00000166889.13759.990601108.00350-0.543904.754803.75570HepG2CIRBP
PATL1ENSG00000166889.13508.37220665.88590-0.389402.435601.42380HepG2CSTF2
PATL1ENSG00000166889.131028.019201449.70080-0.495907.174406.23100HepG2CELF1
PATL1ENSG00000166889.13922.434201153.48180-0.322502.687101.78850HepG2DDX24
PATL1ENSG00000166889.13777.487001059.93680-0.447102.845702.06220HepG2DDX55
PATL1ENSG00000166889.13972.463601277.04240-0.393105.007904.14520HepG2DKC1
PATL1ENSG00000166889.13908.757501229.78190-0.436407.325006.33300HepG2DNAJC2
PATL1ENSG00000166889.13867.136301232.17840-0.506903.628702.89880HepG2EIF4A3
PATL1ENSG00000166889.132287.500201473.134000.634808.432507.04250HepG2EIF4G2
PATL1ENSG00000166889.131015.807901304.30600-0.360703.211402.31290HepG2EWSR1
PATL1ENSG00000166889.131053.626401419.10540-0.429602.405001.35990HepG2FUS
PATL1ENSG00000166889.131306.365801743.17110-0.416203.040302.37340HepG2GPKOW
PATL1ENSG00000166889.131113.251701393.30830-0.323702.453501.79740HepG2HNRNPC
PATL1ENSG00000166889.131039.183301419.86780-0.450308.056306.96110HepG2HNRNPL
PATL1ENSG00000166889.131068.731801384.09640-0.373005.028404.23130HepG2HNRNPU
PATL1ENSG00000166889.131575.694902102.62020-0.416202.677701.47090HepG2HSPD1
PATL1ENSG00000166889.131704.415902176.77130-0.352902.083601.37090HepG2LARP4
PATL1ENSG00000166889.131331.491801647.12120-0.306902.714101.91230HepG2MSI2
PATL1ENSG00000166889.131048.461601370.01580-0.385905.113904.00870HepG2PARN
PATL1ENSG00000166889.13752.827701234.50300-0.7135012.8229011.30110HepG2PPIL4
PATL1ENSG00000166889.13884.334101233.17950-0.479705.044504.35190HepG2PTBP1
PATL1ENSG00000166889.131226.077501475.46040-0.267101.909301.40100HepG2PUF60
PATL1ENSG00000166889.131312.179001565.12890-0.254302.055601.47200HepG2PUM2
PATL1ENSG00000166889.13980.585401359.58770-0.471508.110507.14910HepG2PUS1
PATL1ENSG00000166889.13979.250401551.58970-0.6640011.9171010.99690HepG2RBM22
PATL1ENSG00000166889.13983.294801243.58920-0.338802.261201.37300HepG2RBM27
PATL1ENSG00000166889.131273.890201638.57990-0.363203.546202.78850HepG2RPLP0
PATL1ENSG00000166889.13710.982301032.40120-0.538105.666404.82210HepG2RPS19
PATL1ENSG00000166889.13805.455201146.93260-0.509904.411803.41360HepG2RPS2
PATL1ENSG00000166889.13746.130501357.85220-0.863808.208606.85270HepG2RPS3A
PATL1ENSG00000166889.13890.666801170.75440-0.394502.817501.73230HepG2RPS5
PATL1ENSG00000166889.131036.113901437.41520-0.472309.471608.39680HepG2SMN1
PATL1ENSG00000166889.131458.676901090.225100.419906.764005.96980HepG2SRSF9
PATL1ENSG00000166889.131183.873801521.53030-0.362005.179004.52060HepG2SSB
PATL1ENSG00000166889.131450.916102094.49360-0.529604.447702.85290HepG2SSRP1
PATL1ENSG00000166889.131264.006101656.79140-0.390406.593505.70560HepG2SUCLG1
PATL1ENSG00000166889.13802.435301055.14590-0.395002.373201.74060HepG2SUPV3L1
PATL1ENSG00000166889.13487.13070707.22440-0.537903.582202.46610HepG2TFIP11
PATL1ENSG00000166889.13983.626601344.90020-0.451305.245204.60180HepG2TIAL1
PATL1ENSG00000166889.131075.021501356.93130-0.336004.135503.47420HepG2TRIM56
PATL1ENSG00000166889.132293.472001741.039100.397503.363902.67700HepG2U2AF1
PATL1ENSG00000166889.131543.042001819.63520-0.237902.459201.46100HepG2UTP18
PATL1ENSG00000166889.131320.494701709.18640-0.372205.575504.77360HepG2UTP3
PATL1ENSG00000166889.135843.949003320.200000.8156036.6433034.63530K562AGGF1
PATL1ENSG00000166889.135351.391203454.821200.631205.012804.12180K562AKAP8L
PATL1ENSG00000166889.132870.543803502.09170-0.286902.730901.49820K562APOBEC3C
PATL1ENSG00000166889.133485.413402623.055300.410004.255003.55700K562AQR
PATL1ENSG00000166889.131646.976502094.88790-0.347103.038201.69050K562CIRBP
PATL1ENSG00000166889.134122.805303064.033100.428106.050104.89490K562CPSF6
PATL1ENSG00000166889.133060.526203620.91090-0.242603.436402.72090K562DDX47
PATL1ENSG00000166889.134871.636003717.618700.389905.383004.10760K562DKC1
PATL1ENSG00000166889.132378.977801446.643300.7175010.183708.32750K562EFTUD2
PATL1ENSG00000166889.132312.809201548.795000.578405.333503.83660K562EIF3D
PATL1ENSG00000166889.134564.413303968.883100.201602.498001.60220K562EIF4G2
PATL1ENSG00000166889.132056.755401562.731400.396205.263003.37270K562EWSR1
PATL1ENSG00000166889.132338.797101781.753800.392403.193101.96540K562FKBP4
PATL1ENSG00000166889.134120.372903117.872900.402104.180603.12750K562FMR1
PATL1ENSG00000166889.132238.887501688.932500.406605.699102.93040K562FUBP3
PATL1ENSG00000166889.131509.561801238.857300.285002.848001.48710K562FUS
PATL1ENSG00000166889.131546.116701861.77840-0.268002.045001.51010K562FXR1
PATL1ENSG00000166889.132236.421902861.15130-0.355403.938503.03990K562GRSF1
PATL1ENSG00000166889.135298.258702623.178401.014104.493802.81950K562HNRNPA2B1
PATL1ENSG00000166889.132710.239402052.787900.400704.809304.04280K562HNRNPC
PATL1ENSG00000166889.135400.372603666.419600.558609.342107.58820K562KIF1C
PATL1ENSG00000166889.133813.377502498.137900.610105.514904.14030K562KRR1
PATL1ENSG00000166889.132483.377801987.488500.321302.898001.47250K562LARP7
PATL1ENSG00000166889.131552.393302050.04510-0.401204.466903.26840K562MATR3
PATL1ENSG00000166889.135393.138904107.317400.392802.253801.44660K562MBNL1
PATL1ENSG00000166889.135124.278402878.932800.831708.414206.54240K562NAA15
PATL1ENSG00000166889.133228.503702754.688900.228904.420703.50220K562NSUN2
PATL1ENSG00000166889.132566.306801827.734700.489505.980704.52710K562PCBP2
PATL1ENSG00000166889.131821.567402347.83640-0.366204.371903.36140K562POLR2G
PATL1ENSG00000166889.132619.149903290.08350-0.329002.975602.12070K562PPIG
PATL1ENSG00000166889.132090.990301407.753600.570706.451405.30610K562PRPF8
PATL1ENSG00000166889.131227.464501995.82300-0.7013012.4200011.06290K562PTBP1
PATL1ENSG00000166889.137003.432303426.216301.031309.620108.65670K562PUS1
PATL1ENSG00000166889.135645.460003338.346900.7579022.9620021.18290K562RBM15
PATL1ENSG00000166889.136471.324002820.939401.197803.512601.73160K562RBM39
PATL1ENSG00000166889.131555.645802013.86790-0.372503.070301.91220K562NELFE
PATL1ENSG00000166889.131703.421301380.205700.303504.515802.49840K562RPS10
PATL1ENSG00000166889.132237.311003467.77080-0.632208.182806.35350K562RPS3
PATL1ENSG00000166889.136287.246602096.259301.5845011.357208.41210K562SF1
PATL1ENSG00000166889.134070.504702718.073700.5825014.4719012.71810K562SF3A3
PATL1ENSG00000166889.134603.420402782.481600.726209.482507.60370K562SF3B1
PATL1ENSG00000166889.133741.377902173.910300.7832011.045109.26990K562SF3B4
PATL1ENSG00000166889.136786.251102408.720601.4942010.431807.52580K562SNRNP200
PATL1ENSG00000166889.132485.172903347.99530-0.430005.623204.01770K562SRSF4
PATL1ENSG00000166889.132862.560202397.795400.255502.902401.70170K562SRSF7
PATL1ENSG00000166889.131707.697701445.424500.240502.608501.37190K562SSB
PATL1ENSG00000166889.133466.040302965.196700.225103.064601.72490K562TROVE2
PATL1ENSG00000166889.133730.220102026.257900.8803012.266209.75280K562U2AF1
PATL1ENSG00000166889.134171.332402093.186800.9947030.2760027.69360K562U2AF2
PATL1ENSG00000166889.133106.349702499.287600.313603.183502.24910K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PATL1 is not available on ENCORE database.





11 RBPs can affect the splicing of PATL1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPATL1ENSG00000166889.13chr11-594245525942462659423971594240735942500259425197-0.059000.000700.01560excludedK562SF3B4
SEPATL1ENSG00000166889.13chr11-594234285942351859422995594232135942397159424073-0.189000.000060.00211excludedK562SF3B4
SEPATL1ENSG00000166889.13chr11-594234285942351859422995594232135942397159424097-0.413000.000000.00000excludedHepG2U2AF1
SEPATL1ENSG00000166889.13chr11-594245525942462659423971594240735942500259425197-0.158000.000000.00000excludedHepG2U2AF2
SEPATL1ENSG00000166889.13chr11-594234285942351859422995594232135942397159424097-0.399000.000000.00009excludedHepG2U2AF2
SEPATL1ENSG00000166889.13chr11-5942455259424626594239715942407359425002594251970.114000.008580.07190includedK562AQR
SEPATL1ENSG00000166889.13chr11-594234285942351859422995594232135942397159424073-0.120000.002730.02836excludedK562AQR
SEPATL1ENSG00000166889.13chr11-594245525942462659423971594240735942500259425197-0.088000.000430.06339excludedK562DROSHA
SEPATL1ENSG00000166889.13chr11-5942455259424626594239715942407359425002594251970.135000.000010.01268includedHepG2FAM120A
SEPATL1ENSG00000166889.13chr11-594234285942351859422995594232135942397159424097-0.287000.000040.01146excludedHepG2HNRNPA1
SEPATL1ENSG00000166889.13chr11-594245525942462659423971594240735942500259425197-0.088000.000690.03883excludedK562EFTUD2
SEPATL1ENSG00000166889.13chr11-594234285942351859422995594232135942397159424097-0.190000.000650.01594excludedK562U2AF1
SEPATL1ENSG00000166889.13chr11-594234285942351859422995594232135942397159424073-0.287000.000380.01148excludedHepG2SRSF1
SEPATL1ENSG00000166889.13chr11-594234285942351859422995594232135942397159424097-0.222000.000190.00808excludedHepG2SF3A3
SEPATL1ENSG00000166889.13chr11-5942342859423518594229955942321359423971594240970.118000.000010.00031includedK562HNRNPC
A3SSPATL1ENSG00000166889.13chr11-5942397159424150594239715942407359425002594252330.112000.000010.00006longerK562AQR
A3SSPATL1ENSG00000166889.13chr11-5940676459406969594067645940685659410352594105080.052000.006660.03717longerK562AQR
A3SSPATL1ENSG00000166889.13chr11-5941693459417116594169345941708359418226594184240.103000.000000.00000longerK562AQR
A3SSPATL1ENSG00000166889.13chr11-5942633859426446594263385942641959426724594269420.056000.000460.00347longerK562AQR
A3SSPATL1ENSG00000166889.13chr11-5942031059420538594203105942049159421455594215450.108000.000000.00000longerK562AQR
A3SSPATL1ENSG00000166889.13chr11-5941822659418450594182265941828659419016594191140.076000.000000.00001longerK562AQR
MXEPATL1ENSG00000166889.13chr11-59416934594170835941822659418301594152265941538659419016594191140.057000.002810.022181includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PATL1 is not avaliable on ENCORE database.