N4BP2

General Information

Gene Name       : N4BP2
Gene ID             : ENSG00000078177.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: N4BP2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878N4BP2ENSG00000078177.137.957.707.83ENCSR000AEF
HepG2N4BP2ENSG00000078177.132.955.784.37ENCSR985KAT
K562N4BP2ENSG00000078177.135.494.945.21ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for N4BP2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • N4BP2 RNA is bound by 14 proteins.  







eCLIP assay for N4BP2 is not avaliable on ENCORE database.





14 proteins are bound to N4BP2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr44012775540127818+3'-UTR,CDS5.6988610.47286HepG2BCLAF1
chr44012376340123863+3'-UTR,CDS3.653303.48848HepG2FXR2
chr44011507240115126+3'-UTR,CDS3.418088.16183HepG2BCLAF1
chr44013342640133538+3'-UTR,CDS3.221016.09035HepG2HLTF
chr44013341940133437+3'-UTR,CDS,intron-Proximal4.952036.13315HepG2BCLAF1
chr44014625240146284+3'-UTR,CDS4.285036.22576HepG2BCLAF1
chr44014436740144399+3'-UTR,CDS4.891896.13315HepG2BCLAF1
chr44012249840122547+3'-UTR,CDS3.088695.86900HepG2HLTF
chr44012348440123534+3'-UTR,CDS3.424595.79905HepG2BCLAF1
chr44012194840122029+3'-UTR,CDS5.0803412.89578HepG2BCLAF1
chr44015441940154480+3'-UTR,CDS3.5391110.92438HepG2BCLAF1
chr44013343740133487+3'-UTR,CDS4.130116.81385HepG2BCLAF1
chr44012477840124828+3'-UTR,CDS3.551606.60490HepG2BCLAF1
chr44015448640154558+3'-UTR,CDS,intron-Proximal5.837778.04585HepG2PRPF8
chr44014446340144481+3'-UTR,CDS3.422594.74886HepG2BCLAF1
chr44015448340154513+3'-UTR,CDS5.083556.13315HepG2BCLAF1
chr44012326640123350+3'-UTR,CDS4.2910711.11870HepG2BCLAF1
chr44012474540124778+3'-UTR,CDS,intron-Proximal3.033514.10087HepG2BCLAF1
chr44012220840122290+3'-UTR,CDS3.513449.41803HepG2BCLAF1
chr44012267740122705+3'-UTR,CDS4.247253.55983HepG2HLTF
chr44011505140115066+3'-UTR,CDS,intron-Proximal3.687844.51739HepG2BCLAF1
chr44015443040154496+3'-UTR,CDS3.734654.24220K562ZNF622
chr44015440340154515+3'-UTR,CDS4.040586.46803K562UCHL5
chr44014432940144437+3'-UTR,CDS,intron-Proximal3.443305.11891HepG2GRWD1
chr44012374940123850+3'-UTR,CDS3.725349.10256HepG2HLTF
chr44012209440122115+3'-UTR,CDS3.989963.53509HepG2HLTF
chr44014628940146370+3'-UTR,CDS3.930533.80193HepG2GRWD1
chr44015938940159531+3'-UTR3.760486.19377K562KHSRP
chr44013856440138572+3'-UTR,CDS5.033786.37937HepG2BCLAF1
chr44012781840127944+3'-UTR,CDS4.6017519.99415HepG2BCLAF1
chr44011945940119524+3'-UTR,CDS,intron-Proximal4.871865.81672HepG2U2AF2
chr44012257940122597+3'-UTR,CDS4.593114.78529HepG2BCLAF1
chr44012178040121826+3'-UTR,CDS3.319365.63425HepG2BCLAF1
chr44012573440125829+3'-UTR,CDS,intron-Proximal4.282514.28193HepG2AQR
chr44015439940154527+3'-UTR,CDS,intron-Proximal3.434906.82013HepG2PPIG
chr44014431840144402+3'-UTR,CDS,intron-Proximal3.957145.50166HepG2FXR2
chr44012319740123242+3'-UTR,CDS3.656794.45817HepG2HLTF
chr44013348740133541+3'-UTR,CDS,intron-Proximal6.1850616.28863HepG2BCLAF1
chr44012380840123853+3'-UTR,CDS3.644986.20035HepG2BCLAF1
chr44015849540158570+3'-UTR3.324573.38753K562FAM120A
chr44014635740146399+3'-UTR,CDS3.238725.40132HepG2BCLAF1
chr44012371340123736+3'-UTR,CDS5.446247.39496HepG2BCLAF1
chr44015932440159378+3'-UTR3.220303.29213HepG2KHSRP
chr44015947640159541+3'-UTR4.444053.35169HepG2U2AF2
chr44012375240123808+3'-UTR,CDS5.4682018.25968HepG2BCLAF1
chr44012347840123528+3'-UTR,CDS3.526636.52093HepG2HLTF
chr44011373540113793+3'-UTR,CDS,intron-Proximal4.3376211.11870HepG2BCLAF1
chr44012472140124803+3'-UTR,CDS,intron-Proximal4.516618.14995HepG2U2AF2
chr44015440040154499+3'-UTR,CDS5.466309.35064HepG2FXR2
chr44012195940122062+3'-UTR,CDS5.143876.34071HepG2FXR2
chr44011960440119644+3'-UTR,CDS4.395027.97334HepG2BCLAF1
chr44010386840103999+5'-UTR,CDS4.4837219.15795HepG2BCLAF1
chr44010858140108643+5'-UTR,CDS3.690616.47196HepG2BCLAF1
chr44010406240104137+5'-UTR,CDS3.264026.09950HepG2BCLAF1
chr44005847740058522+5'-UTR4.669916.30794HepG2DDX3X
chr44005855240058651+5'-UTR,intron-Proximal4.374874.66602K562DDX3X
chr44005852640058579+5'-UTR4.766237.46114HepG2DDX3X
chr44011881440118940+intron-Distal3.065464.54788HepG2SUGP2
chr44010051640100595+intron-Distal3.764036.62503K562KHSRP
chr44011698440117060+intron-Distal3.406534.36650HepG2SUGP2
chr44009599640096069+intron-Distal4.631304.96658K562KHSRP
chr44011740140117457+intron-Distal4.021273.29248HepG2SUGP2
chr44009591340095996+intron-Distal3.872195.14864K562KHSRP
chr44009920940099275+intron-Distal,intron-Proximal3.856813.89294K562KHSRP
chr44011780940117839+intron-Distal3.724053.04224HepG2SUGP2
chr44010337840103517+intron-Distal4.251014.02395HepG2KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for N4BP2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for N4BP2 is not available on ENCORE database.

  • 119 RBPs can affect the levels of N4BP2.  








The Knockdown/knockout RNA-Seq assay for N4BP2 is not available on ENCORE database.





119 RBPs can affect the gene expression of N4BP2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
N4BP2ENSG00000078177.9602.76450843.75720-0.485204.067002.79070HepG2AATF
N4BP2ENSG00000078177.9789.311001242.05040-0.654109.893908.88880HepG2ACO1
N4BP2ENSG00000078177.91114.782501466.74170-0.395902.439801.93700HepG2AKAP1
N4BP2ENSG00000078177.9967.659501248.05110-0.367103.108402.30110HepG2AKAP8L
N4BP2ENSG00000078177.9927.481501213.64240-0.388002.642401.87490HepG2ASCC1
N4BP2ENSG00000078177.9416.63660815.09390-0.968208.580206.88920HepG2BCCIP
N4BP2ENSG00000078177.9702.35610950.09120-0.435903.456302.79600HepG2BOP1
N4BP2ENSG00000078177.9805.287801041.32660-0.370803.231302.40400HepG2CALR
N4BP2ENSG00000078177.9994.109201558.15490-0.648403.756602.60750HepG2CCAR1
N4BP2ENSG00000078177.9847.913501241.97910-0.550706.757705.80210HepG2CKAP4
N4BP2ENSG00000078177.9640.158601014.02180-0.663603.541902.67010HepG2CNOT7
N4BP2ENSG00000078177.92238.32390872.233301.3595032.4577030.45250HepG2CPSF6
N4BP2ENSG00000078177.9466.347401100.27290-1.2384032.3259030.63060HepG2CELF1
N4BP2ENSG00000078177.91005.896101183.28800-0.234302.487001.77860HepG2DAZAP1
N4BP2ENSG00000078177.9853.264901148.81000-0.429104.966803.89470HepG2DDX19B
N4BP2ENSG00000078177.9575.24490884.38220-0.620507.771005.97190HepG2DDX1
N4BP2ENSG00000078177.9742.32740930.96520-0.326702.240901.62310HepG2DDX21
N4BP2ENSG00000078177.91294.29700910.983700.506605.733204.41880HepG2DDX24
N4BP2ENSG00000078177.9581.69250850.16440-0.547504.693602.97550HepG2DDX52
N4BP2ENSG00000078177.9412.34170801.36600-0.958608.509607.23350HepG2DDX55
N4BP2ENSG00000078177.9803.948901206.82990-0.586004.610003.83060HepG2DDX6
N4BP2ENSG00000078177.91417.736501188.357000.254502.545201.89230HepG2DKC1
N4BP2ENSG00000078177.9548.93780859.58860-0.6470010.066808.91600HepG2DNAJC2
N4BP2ENSG00000078177.9689.761801160.33910-0.750407.880006.91470HepG2EIF2S1
N4BP2ENSG00000078177.9953.742401248.42650-0.388401.977401.38920HepG2EIF4B
N4BP2ENSG00000078177.91612.202001042.830500.628407.507205.82460HepG2ESF1
N4BP2ENSG00000078177.91973.514701663.277500.246603.093402.46390HepG2ETF1
N4BP2ENSG00000078177.9730.720901215.57620-0.734207.128605.95230HepG2FIP1L1
N4BP2ENSG00000078177.9884.11690667.067100.406302.976001.66040HepG2FKBP4
N4BP2ENSG00000078177.91511.19820873.732800.790302.886301.84810HepG2FTO
N4BP2ENSG00000078177.9924.98600671.112000.462804.150803.19620HepG2FUBP3
N4BP2ENSG00000078177.9850.019601286.58110-0.598004.080302.73510HepG2FUS
N4BP2ENSG00000078177.9741.513701293.61840-0.802909.514208.30230HepG2FXR1
N4BP2ENSG00000078177.9885.674501200.16260-0.438403.041602.34570HepG2G3BP1
N4BP2ENSG00000078177.91787.197601273.941200.488304.552503.39820HepG2G3BP2
N4BP2ENSG00000078177.9533.77090733.31190-0.458203.151902.18940HepG2GEMIN5
N4BP2ENSG00000078177.91556.02010988.738700.654106.444105.49520HepG2GPKOW
N4BP2ENSG00000078177.9911.925201087.36730-0.253902.494501.60090HepG2HNRNPA2B1
N4BP2ENSG00000078177.9785.850801077.95290-0.456005.946604.99080HepG2HNRNPL
N4BP2ENSG00000078177.9934.788101219.98950-0.384202.418901.78240HepG2IGF2BP2
N4BP2ENSG00000078177.9610.014801227.00660-1.0082010.666908.62380HepG2KHSRP
N4BP2ENSG00000078177.9880.314101135.51340-0.367303.629502.46120HepG2KIF1C
N4BP2ENSG00000078177.9731.846601301.35540-0.830408.813507.73920HepG2MATR3
N4BP2ENSG00000078177.9499.78920861.99760-0.786404.781503.42280HepG2METAP2
N4BP2ENSG00000078177.9785.40000983.82890-0.325002.366801.61540HepG2MSI2
N4BP2ENSG00000078177.91421.69890962.333500.562903.178302.13350HepG2MTPAP
N4BP2ENSG00000078177.9918.060201332.04530-0.537004.385703.59640HepG2NCBP2
N4BP2ENSG00000078177.9804.040801173.33390-0.545305.566304.49060HepG2NOL12
N4BP2ENSG00000078177.9428.47480735.65750-0.779803.802602.50560HepG2NONO
N4BP2ENSG00000078177.91997.55320836.661301.2554027.3674025.40840HepG2NSUN2
N4BP2ENSG00000078177.9735.72240957.52340-0.380104.082703.07570HepG2PARN
N4BP2ENSG00000078177.9759.237601104.47120-0.540708.303707.34610HepG2PCBP1
N4BP2ENSG00000078177.9654.306501123.83650-0.7804015.6195014.52260HepG2PTBP1
N4BP2ENSG00000078177.9965.482301188.84330-0.300204.114403.42220HepG2PUM1
N4BP2ENSG00000078177.91512.017601188.020300.347802.610101.95780HepG2PUM2
N4BP2ENSG00000078177.9647.799901265.13800-0.9657017.2180015.91570HepG2PUS1
N4BP2ENSG00000078177.9428.380801175.52280-1.4563013.9989012.52190HepG2RAVER1
N4BP2ENSG00000078177.91100.890301487.82740-0.434502.907702.02980HepG2RBM15
N4BP2ENSG00000078177.9919.493501390.20250-0.596409.699008.86300HepG2RBM22
N4BP2ENSG00000078177.91429.465201104.640000.371803.438402.69260HepG2RBM25
N4BP2ENSG00000078177.91423.853701164.874600.289502.333801.76120HepG2RECQL
N4BP2ENSG00000078177.9800.373601154.46690-0.528503.013502.02920HepG2RPS10
N4BP2ENSG00000078177.9486.72480801.32160-0.719306.849505.93030HepG2RPS19
N4BP2ENSG00000078177.9440.72550611.75710-0.473102.244201.52880HepG2RRP9
N4BP2ENSG00000078177.9519.36550804.34500-0.631105.254503.97080HepG2SERBP1
N4BP2ENSG00000078177.91311.593201871.57350-0.512902.128001.53510HepG2SF3A3
N4BP2ENSG00000078177.91553.394701073.743700.5327010.157608.94460HepG2SLBP
N4BP2ENSG00000078177.9612.841801004.62120-0.7131014.5721013.27790HepG2SMN1
N4BP2ENSG00000078177.9750.849501197.83930-0.673805.223203.88170HepG2SMNDC1
N4BP2ENSG00000078177.91552.425201039.180500.579003.633502.73370HepG2SNRNP70
N4BP2ENSG00000078177.91231.680801570.20060-0.350304.851604.24100HepG2SRFBP1
N4BP2ENSG00000078177.9804.90670675.497100.252801.894601.30720HepG2SRSF7
N4BP2ENSG00000078177.92080.255601363.337500.6095015.4276014.41690HepG2SSB
N4BP2ENSG00000078177.9831.393701235.54330-0.571502.700101.43280HepG2SSRP1
N4BP2ENSG00000078177.9467.61930884.87680-0.920106.829705.04030HepG2STIP1
N4BP2ENSG00000078177.91122.11780797.811500.492003.946103.16060HepG2SUPV3L1
N4BP2ENSG00000078177.91402.881301097.737200.353803.887103.24120HepG2TAF15
N4BP2ENSG00000078177.9768.26680939.91090-0.290902.147901.69640HepG2TIAL1
N4BP2ENSG00000078177.9487.02650948.41300-0.9615021.2005019.82270HepG2TRIM56
N4BP2ENSG00000078177.91392.715501094.061300.348102.829501.94720HepG2TUFM
N4BP2ENSG00000078177.9194.80560471.33560-1.2747013.4265011.78200HepG2UCHL5
N4BP2ENSG00000078177.9452.56150730.71980-0.691202.572301.60760HepG2UPF2
N4BP2ENSG00000078177.9613.859201602.47020-1.3843052.5122050.42080HepG2UTP3
N4BP2ENSG00000078177.9584.94060911.34770-0.639703.872202.56890HepG2XPO5
N4BP2ENSG00000078177.9928.740801825.46120-0.9749038.7999037.37130HepG2ZNF622
N4BP2ENSG00000078177.9880.826601485.17020-0.7537014.0110012.83830K562AGGF1
N4BP2ENSG00000078177.91250.148101631.82250-0.384402.259801.38410K562AKAP8
N4BP2ENSG00000078177.9921.951701545.34880-0.745208.822207.58340K562AKAP8L
N4BP2ENSG00000078177.9839.590101366.15320-0.702408.440707.50610K562AQR
N4BP2ENSG00000078177.9940.925501621.37080-0.7851016.0718013.66580K562ATP5C1
N4BP2ENSG00000078177.91117.678601774.98380-0.6673011.820309.40280K562CCDC124
N4BP2ENSG00000078177.91039.241801388.35970-0.417802.900001.42090K562CKAP4
N4BP2ENSG00000078177.91315.388101670.73680-0.345003.950102.61840K562CPEB4
N4BP2ENSG00000078177.91341.10020985.307600.444704.761203.73630K562CPSF6
N4BP2ENSG00000078177.91486.191701728.72380-0.218102.146201.56040K562DDX47
N4BP2ENSG00000078177.9661.78090850.21150-0.361503.241301.79610K562DDX6
N4BP2ENSG00000078177.91289.574001663.14520-0.367003.831502.77790K562DKC1
N4BP2ENSG00000078177.9580.74240429.482700.435202.654401.34030K562DNAJC21
N4BP2ENSG00000078177.9646.75110876.11600-0.437903.502202.58230K562EIF4A3
N4BP2ENSG00000078177.9574.96290789.00220-0.456604.495502.96200K562EIF4B
N4BP2ENSG00000078177.9521.85370764.76810-0.551405.881803.85910K562EWSR1
N4BP2ENSG00000078177.9877.994101106.44040-0.333602.387801.60020K562FIP1L1
N4BP2ENSG00000078177.9882.84430645.993300.450503.176201.95190K562FKBP4
N4BP2ENSG00000078177.9762.80730911.12600-0.256301.910201.38920K562FXR1
N4BP2ENSG00000078177.9774.343901368.69600-0.8218012.5645010.93380K562GRSF1
N4BP2ENSG00000078177.9462.11720744.67810-0.688405.014104.23340K562HNRNPC
N4BP2ENSG00000078177.91085.620401562.31740-0.525206.388004.71990K562HNRNPL
N4BP2ENSG00000078177.9546.74840910.11660-0.735206.715605.16950K562HNRNPM
N4BP2ENSG00000078177.91581.364801024.448500.626205.492004.22050K562HNRNPU
N4BP2ENSG00000078177.91119.577201500.02300-0.422003.643002.73410K562HSPD1
N4BP2ENSG00000078177.9714.207501147.01550-0.683505.954704.20710K562IGF2BP2
N4BP2ENSG00000078177.9895.355101166.85300-0.382103.200401.89290K562IGF2BP3
N4BP2ENSG00000078177.9598.890901160.47390-0.9543011.757408.38490K562KHSRP
N4BP2ENSG00000078177.91170.357501640.13500-0.486904.845003.69600K562KIF1C
N4BP2ENSG00000078177.9567.43870803.23600-0.501402.855701.90390K562KRR1
N4BP2ENSG00000078177.9794.814001205.92070-0.601407.490906.08240K562MAGOH
N4BP2ENSG00000078177.91103.260801569.90430-0.508904.585603.09710K562MAK16
N4BP2ENSG00000078177.91135.929301837.34680-0.6938012.011709.89910K562MBNL1
N4BP2ENSG00000078177.9736.80040918.26220-0.317602.157001.38360K562METAP2
N4BP2ENSG00000078177.9910.907901287.83530-0.499603.344902.35680K562NAA15
N4BP2ENSG00000078177.9672.31300874.83710-0.379903.100101.79960K562NCBP2
N4BP2ENSG00000078177.9529.18970752.31780-0.507603.498902.00820K562NONO
N4BP2ENSG00000078177.9499.41920732.97800-0.553504.098702.19960K562NUSAP1
N4BP2ENSG00000078177.9713.178601027.86880-0.527304.051401.83110K562PABPC4
N4BP2ENSG00000078177.9761.402001202.21130-0.659002.854301.84390K562PABPN1
N4BP2ENSG00000078177.9752.673401178.57050-0.646908.952206.48740K562PCBP1
N4BP2ENSG00000078177.9717.798001256.10600-0.8073010.925708.97960K562PPIG
N4BP2ENSG00000078177.9872.002601429.70690-0.713302.994701.46010K562PPP1R8
N4BP2ENSG00000078177.9573.55780743.18400-0.373802.166901.49920K562PRPF8
N4BP2ENSG00000078177.9756.945001171.59360-0.630208.513907.39040K562PTBP1
N4BP2ENSG00000078177.91684.745202224.00480-0.400604.205403.20520K562PUF60
N4BP2ENSG00000078177.9624.271601532.83490-1.2960023.7717022.19150K562PUS1
N4BP2ENSG00000078177.9966.476801493.29050-0.627709.225708.16560K562RBM15
N4BP2ENSG00000078177.9763.130101123.66560-0.558204.234803.16780K562RBM22
N4BP2ENSG00000078177.9468.54400608.93600-0.378102.404201.48400K562RCC2
N4BP2ENSG00000078177.9582.993701099.69400-0.915604.177202.61650K562SF1
N4BP2ENSG00000078177.9819.859901011.09390-0.302502.357701.57080K562SF3B4
N4BP2ENSG00000078177.9795.677201084.54750-0.446802.603101.58990K562SRSF5
N4BP2ENSG00000078177.9692.936001162.46800-0.746406.442505.32160K562TARDBP
N4BP2ENSG00000078177.9789.972601121.30290-0.505305.538104.31550K562TIA1
N4BP2ENSG00000078177.9450.94400682.01350-0.596904.456803.19290K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for N4BP2 is not available on ENCORE database.





2 RBPs can affect the splicing of N4BP2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEN4BP2ENSG00000078177.9chr4+4010165540101746400988464009918940103694401048380.386000.001060.05896includedHepG2NCBP2
SEN4BP2ENSG00000078177.9chr4+4010165540101746400988464009918940103694401048380.806000.000150.01134includedHepG2PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for N4BP2 is not avaliable on ENCORE database.