MRPS28

General Information

Gene Name       : MRPS28
Gene ID             : ENSG00000147586.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: MRPS28)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MRPS28ENSG00000147586.965.2854.6659.97ENCSR000AEF
HepG2MRPS28ENSG00000147586.950.0989.4469.77ENCSR985KAT
K562MRPS28ENSG00000147586.960.7159.1959.95ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MRPS28 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MRPS28 RNA is bound by 15 proteins.  







eCLIP assay for MRPS28 is not avaliable on ENCORE database.





15 proteins are bound to MRPS28 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr88083122780831359-3'-UTR,CDS,intron-Distal,intron-Proximal4.223223.96931HepG2G3BP1
chr88083119080831372-3'-UTR,CDS,intron-Distal,intron-Proximal,polyA_site3.081604.56310K562ZNF622
chr88083135280831383-3'-UTR,CDS,intron-Distal,intron-Proximal3.842093.34184HepG2GRWD1
chr88083098480831074-3'-UTR,intron-Distal,intron-Proximal5.163166.96706HepG2LARP4
chr88083116280831209-3'-UTR,intron-Distal,intron-Proximal,polyA_site5.441817.22380HepG2SUB1
chr88094237180942479-CDS,intron-Distal,intron-Proximal3.234225.97131K562DDX3X
chr88091520280915296-CDS,intron-Distal,intron-Proximal3.673844.17155HepG2BCLAF1
chr88091505080915279-CDS,intron-Distal,intron-Proximal4.652837.24774K562KHSRP
chr88094234380942447-CDS,intron-Distal5.922498.17127K562RPS3
chr88092495680925052-intron-Distal3.924803.22972K562TARDBP
chr88091233980912428-intron-Distal3.842753.45317HepG2HNRNPL
chr88090160080901693-intron-Distal4.372344.52538HepG2PTBP1
chr88090470780904768-intron-Distal5.1786510.25043K562TARDBP
chr88092798880928058-intron-Distal4.122293.84389HepG2SUGP2
chr88092921380929298-intron-Distal3.708465.79523HepG2SUGP2
chr88093049080930534-intron-Distal3.953773.79098HepG2SUGP2
chr88090643780906503-intron-Distal3.778043.49011K562KHSRP
chr88090161780901690-intron-Distal4.428283.91475K562PTBP1
chr88090628980906415-intron-Distal3.483408.10682K562KHSRP
chr88091834280918417-intron-Distal4.682274.80466K562EXOSC5
chr88083452780834603-intron-Distal4.163294.05848HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MRPS28 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MRPS28 is not available on ENCORE database.

  • 84 RBPs can affect the levels of MRPS28.  








The Knockdown/knockout RNA-Seq assay for MRPS28 is not available on ENCORE database.





84 RBPs can affect the gene expression of MRPS28 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MRPS28ENSG00000147586.5473.49220663.76430-0.487302.966102.16650HepG2CIRBP
MRPS28ENSG00000147586.5235.70820329.89870-0.485002.345901.32910HepG2CPSF7
MRPS28ENSG00000147586.5510.86440655.46720-0.359602.913402.25690HepG2CELF1
MRPS28ENSG00000147586.5298.64740474.44210-0.667803.988503.07760HepG2DDX55
MRPS28ENSG00000147586.5477.15200694.69610-0.541903.397402.72070HepG2DDX6
MRPS28ENSG00000147586.5224.17760305.89830-0.448402.765202.11400HepG2DNAJC2
MRPS28ENSG00000147586.5323.38640667.98360-1.046609.115908.07800HepG2EIF2S1
MRPS28ENSG00000147586.5423.32350738.27550-0.802406.311505.35070HepG2EIF4A3
MRPS28ENSG00000147586.5529.02710718.67140-0.442002.080901.48020HepG2EIF4B
MRPS28ENSG00000147586.5682.13720839.68590-0.299801.861801.34810HepG2ETF1
MRPS28ENSG00000147586.5278.18030414.72350-0.576103.781802.87080HepG2FUBP3
MRPS28ENSG00000147586.5440.88540744.66170-0.756206.475805.44180HepG2FXR1
MRPS28ENSG00000147586.5436.03990690.90250-0.664004.913404.03790HepG2G3BP1
MRPS28ENSG00000147586.5521.39060733.32530-0.492103.347002.35910HepG2G3BP2
MRPS28ENSG00000147586.5303.94010394.74400-0.377102.375201.70690HepG2HNRNPF
MRPS28ENSG00000147586.5446.62760699.32210-0.646904.284703.43150HepG2HNRNPK
MRPS28ENSG00000147586.5530.58960642.06060-0.275102.250001.63350HepG2HNRNPL
MRPS28ENSG00000147586.5141.27630296.00090-1.067107.077206.12370HepG2HNRNPLL
MRPS28ENSG00000147586.5301.87450388.70960-0.364701.972601.35330HepG2IGF2BP1
MRPS28ENSG00000147586.5394.74610702.32990-0.831206.821805.80690HepG2IGF2BP2
MRPS28ENSG00000147586.5436.29900706.34420-0.695104.611203.28620HepG2KHSRP
MRPS28ENSG00000147586.5157.47800308.40860-0.969705.766703.95260HepG2KRR1
MRPS28ENSG00000147586.5442.69780744.92060-0.750806.333305.34910HepG2MAGOH
MRPS28ENSG00000147586.5461.26900749.12680-0.699605.347904.49590HepG2MATR3
MRPS28ENSG00000147586.5175.70050327.38490-0.897906.105804.94660HepG2MSI2
MRPS28ENSG00000147586.5423.52600766.80300-0.856407.441306.42730HepG2NCBP2
MRPS28ENSG00000147586.5569.71320698.90710-0.294902.081701.41790HepG2NOL12
MRPS28ENSG00000147586.5444.22300683.02630-0.620704.403803.50620HepG2PABPC4
MRPS28ENSG00000147586.5368.50450653.91970-0.8274012.1925011.06420HepG2PCBP1
MRPS28ENSG00000147586.5411.11080665.36510-0.694608.540007.68870HepG2PTBP1
MRPS28ENSG00000147586.5579.41870708.20140-0.289602.540601.96710HepG2PUM1
MRPS28ENSG00000147586.5510.31560720.65510-0.497904.682203.90110HepG2QKI
MRPS28ENSG00000147586.5306.41410719.55300-1.231604.000801.76730HepG2RBM17
MRPS28ENSG00000147586.5493.53230654.02260-0.406202.113801.51900HepG2RBM25
MRPS28ENSG00000147586.5534.05970740.50630-0.471504.791004.11410HepG2NELFE
MRPS28ENSG00000147586.5471.81710689.64680-0.547606.019305.15820HepG2RECQL
MRPS28ENSG00000147586.5311.46780695.63870-1.159303.755102.12730HepG2SF1
MRPS28ENSG00000147586.5486.61260692.77160-0.509605.319904.54550HepG2SF3B4
MRPS28ENSG00000147586.5332.29190674.47390-1.021302.797601.34130HepG2SFPQ
MRPS28ENSG00000147586.5261.83450621.05160-1.246104.599402.81690HepG2SNRNP200
MRPS28ENSG00000147586.5572.76490792.72520-0.468903.785303.22720HepG2SRFBP1
MRPS28ENSG00000147586.5501.49660658.70240-0.393403.494802.80640HepG2SRSF5
MRPS28ENSG00000147586.5394.38320588.25540-0.576806.470305.68980HepG2SRSF9
MRPS28ENSG00000147586.5377.01830649.89270-0.785608.711607.80670HepG2TAF15
MRPS28ENSG00000147586.5449.22340597.21170-0.410803.028202.15910HepG2TIA1
MRPS28ENSG00000147586.5374.45190689.86260-0.881507.304305.91710HepG2UBE2L3
MRPS28ENSG00000147586.5171.40480278.29560-0.699204.612703.87110HepG2UTP3
MRPS28ENSG00000147586.5293.07950218.675800.422402.173901.66030K562AGGF1
MRPS28ENSG00000147586.5324.28410227.543400.511002.772302.11800K562AKAP8L
MRPS28ENSG00000147586.5942.60560726.436800.375702.567601.37460K562APOBEC3C
MRPS28ENSG00000147586.5420.07160813.46740-0.953409.859008.85580K562AQR
MRPS28ENSG00000147586.5166.07660284.86940-0.778503.583902.59180K562BOP1
MRPS28ENSG00000147586.5278.54930540.73400-0.957002.330701.37090K562CNOT7
MRPS28ENSG00000147586.5148.17200302.91780-1.031706.763805.52930K562CPSF6
MRPS28ENSG00000147586.5327.13300244.844600.417902.389801.58420K562DKC1
MRPS28ENSG00000147586.5434.02030593.19130-0.450703.812702.98970K562EIF2S2
MRPS28ENSG00000147586.5235.11240317.54710-0.433602.130001.40580K562EIF4A3
MRPS28ENSG00000147586.5199.41300308.17310-0.628003.402702.45110K562FMR1
MRPS28ENSG00000147586.5178.76780261.18780-0.547002.351201.51330K562FTO
MRPS28ENSG00000147586.5431.43060330.235000.385502.389801.82000K562FXR1
MRPS28ENSG00000147586.5225.82740331.40850-0.553403.585902.29160K562GLRX3
MRPS28ENSG00000147586.5169.18980289.22780-0.773603.888502.95350K562GPKOW
MRPS28ENSG00000147586.5159.07720344.14290-1.113309.439608.38940K562HNRNPC
MRPS28ENSG00000147586.5622.60800439.056600.503803.246001.89770K562HNRNPK
MRPS28ENSG00000147586.5511.53880327.947200.641304.270103.09760K562HNRNPM
MRPS28ENSG00000147586.5190.25970282.31190-0.569302.816401.93100K562METAP2
MRPS28ENSG00000147586.5611.18900877.52350-0.521804.322502.91340K562MSI2
MRPS28ENSG00000147586.5270.82240387.14630-0.515504.025503.14360K562NSUN2
MRPS28ENSG00000147586.5130.01690297.68980-1.195107.728106.33730K562PCBP3
MRPS28ENSG00000147586.5123.47290228.34710-0.887005.435804.31370K562POLR2G
MRPS28ENSG00000147586.5493.78200317.329900.637804.354503.41440K562PRPF8
MRPS28ENSG00000147586.5204.92970308.56140-0.590403.191702.20920K562PSIP1
MRPS28ENSG00000147586.5644.74210448.942000.522104.682903.84150K562PTBP1
MRPS28ENSG00000147586.5773.62610936.13120-0.275102.164101.31420K562PUM2
MRPS28ENSG00000147586.5546.53820749.59530-0.455803.531001.70790K562RBM17
MRPS28ENSG00000147586.5177.79950281.52830-0.663003.591202.46340K562RCC2
MRPS28ENSG00000147586.5174.90330266.88070-0.609602.969301.89730K562SRFBP1
MRPS28ENSG00000147586.5336.60080440.13640-0.386902.166201.53220K562SRSF1
MRPS28ENSG00000147586.5252.48030372.34260-0.560503.904902.34430K562SSB
MRPS28ENSG00000147586.5600.39650783.72890-0.384402.956301.39990K562SUCLG1
MRPS28ENSG00000147586.5201.79250307.26840-0.606602.892301.85160K562SUPV3L1
MRPS28ENSG00000147586.5343.28700445.39590-0.375701.915701.32000K562TARDBP
MRPS28ENSG00000147586.5228.22690345.60570-0.598703.416401.62960K562TBRG4
MRPS28ENSG00000147586.5160.75280296.78370-0.884605.373304.02820K562TIAL1
MRPS28ENSG00000147586.5203.28230315.30110-0.633203.521802.42960K562TRIM56
MRPS28ENSG00000147586.5761.519701012.81500-0.411403.464401.87860K562UBE2L3
MRPS28ENSG00000147586.5178.41050325.19350-0.866105.672704.16240K562UCHL5
MRPS28ENSG00000147586.5273.73040410.49890-0.584604.827203.90580K562UPF1
MRPS28ENSG00000147586.5214.60340351.25190-0.710805.154103.94160K562WDR3
MRPS28ENSG00000147586.5286.92320365.25440-0.348202.085701.34360K562WDR43
MRPS28ENSG00000147586.5232.72650331.11860-0.508702.495401.36580K562XRN2
MRPS28ENSG00000147586.5581.79630916.50820-0.655604.287403.17490K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MRPS28 is not available on ENCORE database.





11 RBPs can affect the splicing of MRPS28 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEMRPS28ENSG00000147586.5chr8-809152338091541580831089808313838094227080942506-0.212000.000000.00000excludedK562SRSF1
SEMRPS28ENSG00000147586.5chr8-809152338091541580831089808313838094227080942506-0.177000.000000.00000excludedK562PRPF8
SEMRPS28ENSG00000147586.5chr8-809152338091541580831089808313838094227080942506-0.070000.000140.01695excludedHepG2TBRG4
SEMRPS28ENSG00000147586.5chr8-809152338091541580831089808313838094225580942467-0.057000.000320.00543excludedHepG2U2AF2
SEMRPS28ENSG00000147586.5chr8-809409298094103180915233809154158094228880942467-0.313000.000480.02211excludedK562FXR1
SEMRPS28ENSG00000147586.5chr8-809152338091541580831089808313838094227080942506-0.139000.000010.00092excludedK562EFTUD2
SEMRPS28ENSG00000147586.5chr8-809152338091541580831089808313838094227080942506-0.054000.000250.02234excludedK562HNRNPL
SEMRPS28ENSG00000147586.5chr8-809152338091541580831089808313838094227080942506-0.142000.000000.00000excludedHepG2SRSF1
SEMRPS28ENSG00000147586.5chr8-809152338091541580831089808313838094227080942506-0.071000.000260.01040excludedHepG2SF3A3
SEMRPS28ENSG00000147586.5chr8-809152338091541580831089808313838094227080942506-0.053000.001500.09060excludedHepG2TIAL1
SEMRPS28ENSG00000147586.5chr8-8094092980941031809152338091541580942288809424670.369000.000340.01628includedHepG2HNRNPC
SEMRPS28ENSG00000147586.5chr8-809152338091541580831089808313838094227080942506-0.071000.000190.01015excludedHepG2HNRNPC
SEMRPS28ENSG00000147586.5chr8-809409298094103180915233809154158094228880942467-0.318000.000110.00706excludedK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MRPS28 is not avaliable on ENCORE database.