LYRM2

General Information

Gene Name       : LYRM2
Gene ID             : ENSG00000083099.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LYRM2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LYRM2ENSG00000083099.1025.7818.9922.38ENCSR000AEF
HepG2LYRM2ENSG00000083099.109.6624.4217.04ENCSR985KAT
K562LYRM2ENSG00000083099.1035.3830.1832.78ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LYRM2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LYRM2 RNA is bound by 2 proteins.  







eCLIP assay for LYRM2 is not avaliable on ENCORE database.





2 proteins are bound to LYRM2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr69034421890344258-3'-UTR,intron-Distal3.947413.20319K562UPF1
chr69034409990344146-3'-UTR,intron-Distal4.141693.54010K562UPF1
chr69034746290347602-CDS,intron-Distal,intron-Proximal3.444813.02345K562ZNF622
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LYRM2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LYRM2 is not available on ENCORE database.

  • 92 RBPs can affect the levels of LYRM2.  








The Knockdown/knockout RNA-Seq assay for LYRM2 is not available on ENCORE database.





92 RBPs can affect the gene expression of LYRM2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LYRM2ENSG00000083099.6666.07760498.582600.417802.339301.47080HepG2ABCF1
LYRM2ENSG00000083099.6644.99050481.171400.422604.145203.42940HepG2ACO1
LYRM2ENSG00000083099.61572.50720974.008700.691006.478005.70250HepG2AKAP1
LYRM2ENSG00000083099.61146.18180805.928300.508004.138003.18690HepG2ASCC1
LYRM2ENSG00000083099.6927.54720535.535900.792309.545608.51900HepG2BOP1
LYRM2ENSG00000083099.6677.87490513.721400.399902.944402.15150HepG2CALR
LYRM2ENSG00000083099.6689.95110481.113900.520006.342205.40990HepG2CKAP4
LYRM2ENSG00000083099.6785.16930381.936001.039607.974306.68610HepG2CNOT7
LYRM2ENSG00000083099.6327.31360491.65360-0.587003.905903.10180HepG2CPSF6
LYRM2ENSG00000083099.6819.00510669.681000.290302.018801.45350HepG2CELF1
LYRM2ENSG00000083099.6603.35050425.322200.504303.595002.83020HepG2DDX21
LYRM2ENSG00000083099.6586.98370801.43170-0.449302.580301.98350HepG2DDX6
LYRM2ENSG00000083099.6651.59510460.362900.501102.621401.95990HepG2DKC1
LYRM2ENSG00000083099.6519.89070354.299100.553103.383802.37200HepG2EEF2
LYRM2ENSG00000083099.6420.86400295.368600.510702.899401.76580HepG2EFTUD2
LYRM2ENSG00000083099.6447.13880770.52550-0.785107.234506.30940HepG2EIF2S1
LYRM2ENSG00000083099.6541.27120401.483100.430902.884901.78260HepG2EIF3G
LYRM2ENSG00000083099.6397.05990829.03480-1.062109.494508.25870HepG2EIF4B
LYRM2ENSG00000083099.6875.61070710.404300.301502.392701.60600HepG2EIF4G1
LYRM2ENSG00000083099.6350.13160503.47600-0.524002.438401.71280HepG2FIP1L1
LYRM2ENSG00000083099.6658.82010859.06170-0.382902.348301.70900HepG2FXR1
LYRM2ENSG00000083099.6661.95880437.601200.597004.783403.44200HepG2GNB2L1
LYRM2ENSG00000083099.6563.03440379.341400.569604.096903.33380HepG2HNRNPA1
LYRM2ENSG00000083099.6478.14350591.56570-0.307102.182301.53980HepG2HNRNPF
LYRM2ENSG00000083099.6895.05490531.873800.750807.659806.67220HepG2HNRNPLL
LYRM2ENSG00000083099.6537.37290419.149100.358402.748902.14380HepG2HNRNPU
LYRM2ENSG00000083099.6289.35250760.17490-1.393507.345805.79740HepG2IGF2BP3
LYRM2ENSG00000083099.61080.53500691.170300.644504.897703.78210HepG2LARP4
LYRM2ENSG00000083099.6555.26830407.600300.445903.083802.23190HepG2MSI2
LYRM2ENSG00000083099.6494.88420787.84360-0.670805.648704.62940HepG2PABPC4
LYRM2ENSG00000083099.6782.63400510.641200.615903.662802.47710HepG2PCBP2
LYRM2ENSG00000083099.6562.74700400.151500.491804.562603.59490HepG2PRPF4
LYRM2ENSG00000083099.6540.49050382.684100.498003.216102.35150HepG2PRPF8
LYRM2ENSG00000083099.6687.43640490.111200.488005.456604.64440HepG2PUS1
LYRM2ENSG00000083099.6741.37660492.849400.589002.701102.00380HepG2RAVER1
LYRM2ENSG00000083099.61214.41310754.345300.6869011.5962010.68890HepG2RBM22
LYRM2ENSG00000083099.6713.71910516.917600.465303.265102.18230HepG2RBM27
LYRM2ENSG00000083099.6260.16800419.75930-0.690103.699202.47220HepG2RCC2
LYRM2ENSG00000083099.6666.87420845.90830-0.343102.542201.94760HepG2RECQL
LYRM2ENSG00000083099.6905.91350637.257500.507404.428003.59430HepG2RPLP0
LYRM2ENSG00000083099.6424.35960279.860100.600504.170603.43100HepG2RPS19
LYRM2ENSG00000083099.6708.84030476.746000.572104.539203.52720HepG2RPS2
LYRM2ENSG00000083099.6632.18460383.103900.722504.421603.41030HepG2RPS3A
LYRM2ENSG00000083099.6505.81140378.565400.418002.230801.51770HepG2RRP9
LYRM2ENSG00000083099.6247.16250373.27620-0.594804.791503.98350HepG2SAFB2
LYRM2ENSG00000083099.6424.90350280.888400.597003.677402.58880HepG2SERBP1
LYRM2ENSG00000083099.6601.34390849.83370-0.499004.188903.48510HepG2SF3B4
LYRM2ENSG00000083099.6799.15420585.770800.448002.011201.34970HepG2SNRNP70
LYRM2ENSG00000083099.61155.66530886.995200.381603.954803.41480HepG2SRSF1
LYRM2ENSG00000083099.61082.73490739.783500.549408.892808.07470HepG2SSB
LYRM2ENSG00000083099.6905.71250765.404700.242701.851101.32370HepG2SUCLG1
LYRM2ENSG00000083099.6776.58230493.719000.653305.199804.31820HepG2SUPV3L1
LYRM2ENSG00000083099.6648.80920797.13510-0.297001.891501.41190HepG2TAF15
LYRM2ENSG00000083099.6325.02270518.39460-0.673505.136204.19300HepG2TARDBP
LYRM2ENSG00000083099.6537.72840407.316000.400602.706002.20990HepG2TIAL1
LYRM2ENSG00000083099.6645.91380394.878200.709808.522407.45230HepG2ZC3H8
LYRM2ENSG00000083099.6387.72880748.40410-0.9488014.5546013.35810K562AGGF1
LYRM2ENSG00000083099.6587.84670822.30330-0.484204.299303.01640K562AKAP8
LYRM2ENSG00000083099.6442.72990778.72880-0.814705.212604.30370K562AKAP8L
LYRM2ENSG00000083099.61872.490001328.898700.494605.977604.04770K562APOBEC3C
LYRM2ENSG00000083099.6571.99750817.03690-0.514405.900304.50300K562ATP5C1
LYRM2ENSG00000083099.6555.33820772.79460-0.476705.292903.94720K562BCLAF1
LYRM2ENSG00000083099.6461.73180783.98550-0.763804.156603.19180K562CPSF6
LYRM2ENSG00000083099.6336.12570477.70190-0.507103.706002.47860K562DDX3X
LYRM2ENSG00000083099.61549.446201155.126600.423606.435705.49970K562DDX47
LYRM2ENSG00000083099.6672.31240838.09090-0.318002.878101.98350K562DKC1
LYRM2ENSG00000083099.6278.85660449.40510-0.688506.808704.87180K562EIF4B
LYRM2ENSG00000083099.6289.77780435.61070-0.588104.349702.67470K562EWSR1
LYRM2ENSG00000083099.6624.047201010.22350-0.694907.934506.42480K562FIP1L1
LYRM2ENSG00000083099.6578.84170797.58770-0.462502.320601.53530K562FMR1
LYRM2ENSG00000083099.6951.49900518.994000.8744015.4008014.08140K562FXR1
LYRM2ENSG00000083099.6449.26440862.96870-0.941704.923603.15160K562HNRNPA2B1
LYRM2ENSG00000083099.6394.45480722.86590-0.8739010.944808.46010K562IGF2BP3
LYRM2ENSG00000083099.6597.88040826.49460-0.467104.099703.06910K562KIF1C
LYRM2ENSG00000083099.6531.30690791.10300-0.574305.175503.54560K562MAK16
LYRM2ENSG00000083099.6675.81310925.87310-0.454204.136702.98870K562MBNL1
LYRM2ENSG00000083099.6443.34630730.65510-0.720803.361602.39340K562METAP2
LYRM2ENSG00000083099.6412.46230648.96400-0.653904.168803.02450K562NAA15
LYRM2ENSG00000083099.6724.82820905.16280-0.320503.576102.73880K562NSUN2
LYRM2ENSG00000083099.6302.49950755.16680-1.319908.404606.35740K562PABPN1
LYRM2ENSG00000083099.6839.22420664.722600.336202.228901.35560K562PCBP2
LYRM2ENSG00000083099.6920.818601146.82010-0.316702.183001.45810K562PPIG
LYRM2ENSG00000083099.6471.32220898.11750-0.930204.317002.34790K562PPP1R8
LYRM2ENSG00000083099.6965.58260661.373800.545802.644701.91130K562PRPF8
LYRM2ENSG00000083099.6352.68160482.37010-0.451802.538601.67800K562PSIP1
LYRM2ENSG00000083099.61127.97440725.778600.636008.548907.42370K562PTBP1
LYRM2ENSG00000083099.62193.119501643.181600.416403.480202.56790K562PUF60
LYRM2ENSG00000083099.6382.97930772.42560-1.0121012.4868011.37930K562PUS1
LYRM2ENSG00000083099.6400.97190752.49610-0.9082012.6577011.39090K562RBM15
LYRM2ENSG00000083099.6247.76720440.00160-0.828507.369305.74410K562RCC2
LYRM2ENSG00000083099.6315.26350690.79990-1.131705.411703.55110K562SF1
LYRM2ENSG00000083099.6476.47880793.06060-0.735002.881901.61970K562SNRNP200
LYRM2ENSG00000083099.6591.33640762.50410-0.366803.289002.00430K562SRSF7
LYRM2ENSG00000083099.6579.22650948.81680-0.712002.823701.38100K562SUPT6H
LYRM2ENSG00000083099.6902.96470567.003200.671205.772904.57980K562SYNCRIP
LYRM2ENSG00000083099.6510.01230694.62160-0.445703.073402.20260K562TIA1
LYRM2ENSG00000083099.6507.33200681.49800-0.425802.832901.72310K562TRA2A
LYRM2ENSG00000083099.6353.56530492.79950-0.479002.379501.51330K562TRIM56
LYRM2ENSG00000083099.6776.13350992.39710-0.354603.617002.15620K562TROVE2
LYRM2ENSG00000083099.6445.09740783.01710-0.814904.235802.51560K562UTP18
LYRM2ENSG00000083099.6615.81930821.24200-0.415303.445602.47180K562WDR3
LYRM2ENSG00000083099.6936.83870562.248000.736503.791701.86320K562XRCC6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LYRM2 is not available on ENCORE database.





1 RBPs can affect the splicing of LYRM2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSLYRM2ENSG00000083099.6chr6-9034744390347677903474439034760190348390903484530.061000.000000.00003longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LYRM2 is not avaliable on ENCORE database.