LGI4

General Information

Gene Name       : LGI4
Gene ID             : ENSG00000153902.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LGI4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LGI4ENSG00000153902.130.000.010.01ENCSR000AEF
HepG2LGI4ENSG00000153902.130.060.010.03ENCSR985KAT
K562LGI4ENSG00000153902.130.240.200.22ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LGI4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LGI4 RNA is bound by 3 proteins.  







eCLIP assay for LGI4 is not avaliable on ENCORE database.





3 proteins are bound to LGI4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193562890335628990-intron-Distal5.038706.53047K562AGGF1
chr193562819935628305-intron-Distal4.614104.94713K562HNRNPL
chr193563208735632131-intron-Distal3.745363.14687K562CSTF2T
chr193563304335633144-intron-Distal4.348314.27402K562CSTF2T
chr193562833335628414-intron-Distal3.455554.05663K562HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LGI4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LGI4 is not available on ENCORE database.

  • 104 RBPs can affect the levels of LGI4.  








The Knockdown/knockout RNA-Seq assay for LGI4 is not available on ENCORE database.





104 RBPs can affect the gene expression of LGI4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LGI4ENSG00000153902.97.4227037.59380-2.340504.232602.93320HepG2AATF
LGI4ENSG00000153902.94.1345052.27340-3.6603011.1929010.14360HepG2ACO1
LGI4ENSG00000153902.97.79980115.15690-3.8840010.874509.88750HepG2AKAP1
LGI4ENSG00000153902.944.02070111.56940-1.341705.056703.66310HepG2AKAP8
LGI4ENSG00000153902.995.5723052.505000.864002.789002.01950HepG2AKAP8L
LGI4ENSG00000153902.975.0548031.090001.271404.215303.39990HepG2AUH
LGI4ENSG00000153902.934.9580014.756801.244101.819001.32440HepG2BOP1
LGI4ENSG00000153902.918.7652052.24520-1.477203.709202.96000HepG2CKAP4
LGI4ENSG00000153902.9178.5552013.547803.7201030.2244028.27940HepG2CPSF6
LGI4ENSG00000153902.911.8674038.53370-1.699102.906701.50560HepG2CSTF2T
LGI4ENSG00000153902.972.2108027.220101.407404.329003.43540HepG2DAZAP1
LGI4ENSG00000153902.9166.3027049.460401.7494011.211609.34510HepG2DDX5
LGI4ENSG00000153902.948.328909.033902.419404.366203.14440HepG2DHX30
LGI4ENSG00000153902.9118.522809.366303.6614023.1667021.34920HepG2DNAJC21
LGI4ENSG00000153902.99.3055032.99090-1.825902.638501.73560HepG2EEF2
LGI4ENSG00000153902.9171.98610100.610600.773402.981602.31760HepG2EIF4A3
LGI4ENSG00000153902.98.1996098.01960-3.579409.942408.67900HepG2EIF4B
LGI4ENSG00000153902.993.9409025.713301.869107.190705.90430HepG2EIF4G2
LGI4ENSG00000153902.9340.4970013.570404.649004.485103.20010HepG2FTO
LGI4ENSG00000153902.935.20110104.21950-1.565906.396205.23100HepG2FUBP3
LGI4ENSG00000153902.94.7988021.16100-2.140702.448601.39470HepG2FUS
LGI4ENSG00000153902.918.87200101.60880-2.428706.558205.51890HepG2FXR1
LGI4ENSG00000153902.93.8372023.85160-2.636003.141702.18170HepG2GEMIN5
LGI4ENSG00000153902.985.6254015.358402.478908.090207.03610HepG2GPKOW
LGI4ENSG00000153902.933.998604.660702.866705.930004.93260HepG2HNRNPF
LGI4ENSG00000153902.956.8593024.800601.196902.712802.04530HepG2HNRNPL
LGI4ENSG00000153902.9121.3248014.656703.0491016.1989014.85110HepG2HNRNPLL
LGI4ENSG00000153902.945.030004.589603.294308.693307.47870HepG2IGF2BP1
LGI4ENSG00000153902.933.4764095.74020-1.516003.808203.02730HepG2IGF2BP2
LGI4ENSG00000153902.94.5638089.92110-4.3004010.359408.55750HepG2IGF2BP3
LGI4ENSG00000153902.9124.6902035.773901.801308.006805.70530HepG2ILF3
LGI4ENSG00000153902.9104.1958035.036901.572305.388303.64940HepG2KHDRBS1
LGI4ENSG00000153902.959.58000121.39030-1.026803.231701.87790HepG2KRR1
LGI4ENSG00000153902.931.86040102.19780-1.681504.496503.70930HepG2MATR3
LGI4ENSG00000153902.9115.0072014.946102.943807.558705.92830HepG2MTPAP
LGI4ENSG00000153902.926.29320104.59230-1.992005.158404.30560HepG2NCBP2
LGI4ENSG00000153902.949.58300115.12340-1.215304.027602.31220HepG2NKRF
LGI4ENSG00000153902.9216.7157012.995304.0596036.8912034.68160HepG2NSUN2
LGI4ENSG00000153902.9118.1155033.552301.815605.375204.10630HepG2PABPC1
LGI4ENSG00000153902.923.16710109.87950-2.245808.761907.78110HepG2PCBP1
LGI4ENSG00000153902.988.0306032.912601.419302.933301.36510HepG2PNPT1
LGI4ENSG00000153902.9137.3195025.495702.4291016.1747014.56090HepG2PRPF4
LGI4ENSG00000153902.97.94570111.82520-3.8149014.7871013.71790HepG2PTBP1
LGI4ENSG00000153902.986.1617025.760101.741806.045205.20860HepG2PUF60
LGI4ENSG00000153902.93.4422027.33990-2.989604.978304.22990HepG2PUM1
LGI4ENSG00000153902.91.7589053.24140-4.9198014.4688013.25350HepG2PUS1
LGI4ENSG00000153902.91.1288019.32190-4.097303.549302.75370HepG2RAVER1
LGI4ENSG00000153902.92.7406029.82930-3.444205.215804.56030HepG2RBM22
LGI4ENSG00000153902.915.87220124.43510-2.9708011.9416010.96850HepG2NELFE
LGI4ENSG00000153902.929.16790115.92260-1.990707.469306.52910HepG2RECQL
LGI4ENSG00000153902.963.942005.019003.6712011.9531010.70670HepG2RPLP0
LGI4ENSG00000153902.92.5752026.05940-3.339005.002504.20360HepG2RPS19
LGI4ENSG00000153902.979.1445026.162801.596905.002703.75080HepG2SERBP1
LGI4ENSG00000153902.924.4001073.08720-1.582702.938102.24180HepG2SF3A3
LGI4ENSG00000153902.9179.4387014.507703.6285028.9601026.95360HepG2SF3B1
LGI4ENSG00000153902.925.54980116.39090-2.187608.543407.59300HepG2SF3B4
LGI4ENSG00000153902.969.1367024.688501.485502.800802.09460HepG2SLBP
LGI4ENSG00000153902.960.6984018.864801.685903.985302.08140HepG2SLTM
LGI4ENSG00000153902.91.24300121.50060-6.6110022.5998021.52900HepG2SRSF1
LGI4ENSG00000153902.97.8886025.42770-1.688602.318201.73890HepG2SRSF5
LGI4ENSG00000153902.936.756304.578603.004906.721905.71520HepG2SRSF7
LGI4ENSG00000153902.910.5928029.26040-1.465901.978301.52630HepG2SSB
LGI4ENSG00000153902.943.74930121.03530-1.468107.014705.11390HepG2SSRP1
LGI4ENSG00000153902.94.1540028.92400-2.799704.615003.84880HepG2SUCLG1
LGI4ENSG00000153902.9108.8062040.315601.432205.478404.18030HepG2SUPT6H
LGI4ENSG00000153902.921.86450109.24740-2.320908.839707.92900HepG2TAF15
LGI4ENSG00000153902.938.2252014.283501.420102.314301.64330HepG2TARDBP
LGI4ENSG00000153902.943.1013010.243702.072904.863304.15830HepG2TRIM56
LGI4ENSG00000153902.919.6110062.57800-1.674004.455203.72420HepG2UTP3
LGI4ENSG00000153902.9117.8338033.069301.833108.932006.99010HepG2XPO5
LGI4ENSG00000153902.974.7708018.553902.010706.042404.23950K562ABCF1
LGI4ENSG00000153902.990.3805021.192202.092407.070006.20280K562AQR
LGI4ENSG00000153902.9173.4063039.985002.116504.665003.52090K562BOP1
LGI4ENSG00000153902.953.9642012.925002.061704.580602.69060K562BUD13
LGI4ENSG00000153902.926.808305.538302.275103.298802.12610K562CCAR1
LGI4ENSG00000153902.9100.3634033.377301.588205.047503.02940K562CKAP4
LGI4ENSG00000153902.982.2647030.284401.441603.769302.49520K562CNOT7
LGI4ENSG00000153902.9129.2973042.500501.605006.868705.62470K562CPSF6
LGI4ENSG00000153902.971.9564028.218401.350402.427001.51550K562CELF1
LGI4ENSG00000153902.930.115006.200102.280003.634002.08000K562DHX30
LGI4ENSG00000153902.929.258905.955602.296503.474701.95770K562DNAJC21
LGI4ENSG00000153902.968.9925014.184902.282004.064202.04310K562ESF1
LGI4ENSG00000153902.963.1367018.795301.748005.284103.48840K562EXOSC5
LGI4ENSG00000153902.9152.6739043.272401.818804.895303.75100K562FMR1
LGI4ENSG00000153902.9162.6801036.689902.148504.710603.48720K562FTO
LGI4ENSG00000153902.9130.9135040.565401.690204.139303.17290K562GPKOW
LGI4ENSG00000153902.955.0459013.958901.979304.222203.29110K562GRSF1
LGI4ENSG00000153902.983.3017027.179701.615704.501402.20810K562HNRNPA0
LGI4ENSG00000153902.956.9253012.909302.140604.228802.62280K562HNRNPA2B1
LGI4ENSG00000153902.9165.2802010.240204.0125028.8591027.01760K562HNRNPC
LGI4ENSG00000153902.999.3364027.660101.844406.154703.98150K562ILF2
LGI4ENSG00000153902.930.736905.592002.458404.193102.35010K562KHDRBS1
LGI4ENSG00000153902.9132.0815034.669401.929602.192401.37230K562KRR1
LGI4ENSG00000153902.9147.7287039.601501.899205.513604.25030K562METAP2
LGI4ENSG00000153902.975.6298024.443201.629404.336702.92550K562MSI2
LGI4ENSG00000153902.977.8134018.949502.037807.395006.12780K562MTPAP
LGI4ENSG00000153902.980.8752021.055301.941407.197606.07650K562NSUN2
LGI4ENSG00000153902.998.9144029.094601.765303.251601.89710K562PABPC1
LGI4ENSG00000153902.9165.2495023.907902.7890011.350909.66850K562PCBP3
LGI4ENSG00000153902.9118.5288018.342702.6919010.843709.30380K562POLR2G
LGI4ENSG00000153902.985.8278026.951601.671005.012802.58710K562PPIL4
LGI4ENSG00000153902.970.5860026.075701.436603.516902.43490K562PUM2
LGI4ENSG00000153902.970.3120029.873301.234803.000802.43940K562PUS1
LGI4ENSG00000153902.929.557905.907802.322803.616901.40560K562RBFOX2
LGI4ENSG00000153902.959.3172013.860302.097403.093501.44210K562RBM39
LGI4ENSG00000153902.927.3607089.67760-1.712605.470903.99460K562RPS3
LGI4ENSG00000153902.994.6780027.588401.778904.124802.16630K562SBDS
LGI4ENSG00000153902.968.1995020.775201.714805.302104.19940K562SF3A3
LGI4ENSG00000153902.9124.1576038.623101.684503.846102.68740K562SF3B1
LGI4ENSG00000153902.929.797806.100102.288202.770501.50390K562SLBP
LGI4ENSG00000153902.967.6919016.005202.080306.253304.29670K562STAU1
LGI4ENSG00000153902.9114.7489027.001602.087307.735505.10410K562STIP1
LGI4ENSG00000153902.933.582408.831101.926903.103802.10830K562TIAL1
LGI4ENSG00000153902.954.0000015.598201.791504.502402.61460K562TRIP6
LGI4ENSG00000153902.941.324309.172002.171604.176002.89970K562UCHL5
LGI4ENSG00000153902.987.0156022.325301.962507.921506.78070K562UPF1
LGI4ENSG00000153902.979.5688030.299201.392803.731702.15950K562UTP18
LGI4ENSG00000153902.975.1509023.433101.681105.539403.84950K562UTP3
LGI4ENSG00000153902.996.6473019.103202.338808.466806.89460K562WDR3
LGI4ENSG00000153902.957.1927025.127301.186502.801501.50080K562WRN
LGI4ENSG00000153902.9101.7979023.864702.0927010.359708.56780K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LGI4 is not available on ENCORE database.





1 RBPs can affect the splicing of LGI4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELGI4ENSG00000153902.9chr19-356242213562434835622874356229463562459635624668-0.409000.000160.01890excludedHepG2TBRG4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LGI4 is not avaliable on ENCORE database.