HBG1

General Information

Gene Name       : HBG1
Gene ID             : ENSG00000213934.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HBG1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HBG1ENSG00000213934.80.000.000.00ENCSR000AEF
HepG2HBG1ENSG00000213934.80.000.000.00ENCSR985KAT
K562HBG1ENSG00000213934.84836.403294.494065.44ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HBG1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HBG1 RNA is bound by 23 proteins.  







eCLIP assay for HBG1 is not avaliable on ENCORE database.





23 proteins are bound to HBG1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1152695615269569-3'-UTR,intron-Distal5.57783400.00000K562PABPC4
chr1152695075269539-3'-UTR,intron-Distal4.6261427.89691K562IGF2BP1
chr1152695045269522-3'-UTR,intron-Distal4.0523422.19944K562LARP4
chr1152695745269654-3'-UTR,CDS,intron-Distal3.24195400.00000K562LIN28B
chr1152695385269650-3'-UTR,CDS,intron-Distal3.1090724.31923K562EIF3G
chr1152695775269592-3'-UTR,intron-Distal3.37207400.00000K562PABPC4
chr1152695485269579-3'-UTR,intron-Distal3.4398943.77669K562IGF2BP1
chr1152695315269660-3'-UTR,CDS,intron-Distal3.06790400.00000K562GEMIN5
chr1152695865269606-3'-UTR,CDS,intron-Distal3.3869876.01463K562APOBEC3C
chr1152695455269655-3'-UTR,CDS,intron-Distal3.6313040.51758K562ZNF800
chr1152693665269418-3'-UTR,intron-Distal6.0241545.88649HepG2SUB1
chr1152693375269412-3'-UTR,intron-Distal4.6142833.79945K562TARDBP
chr1152695695269577-3'-UTR,intron-Distal5.42993400.00000K562PABPC4
chr1152695195269577-3'-UTR,intron-Distal3.4357767.06775K562DDX6
chr1152695235269659-3'-UTR,CDS,intron-Distal3.2947981.74167K562METAP2
chr1152695165269520-3'-UTR,intron-Distal5.73724400.00000K562PABPC4
chr1152695395269548-3'-UTR,intron-Distal4.1391128.68521K562IGF2BP1
chr1152693745269416-3'-UTR,intron-Distal3.713784.96120K562NOLC1
chr1152695285269561-3'-UTR,intron-Distal5.89617400.00000K562PABPC4
chr1152695265269586-3'-UTR,intron-Distal4.59537400.00000K562APOBEC3C
chr1152695405269589-3'-UTR,intron-Distal5.30228400.00000K562RPS3
chr1152695415269593-3'-UTR,CDS,intron-Distal3.209367.08604K562ZC3H8
chr1152695255269579-3'-UTR,intron-Distal3.3453443.41892K562SND1
chr1152695225269594-3'-UTR,CDS,intron-Distal3.90087400.00000K562LARP4
chr1152706705270676-CDS,intron-Distal3.04514400.00000K562YBX3
chr1152695935269655-CDS,intron-Distal5.41515400.00000K562RPS3
chr1152696045269648-CDS,intron-Distal3.13858400.00000K562PABPC4
chr1152705475270599-CDS,intron-Distal,intron-Proximal3.092385.73182K562SF3B4
chr1152695945269650-CDS,intron-Distal3.5156970.84351K562LARP4
chr1152706505270653-CDS,intron-Distal3.4461136.36824K562YBX3
chr1152705385270610-CDS,intron-Distal,intron-Proximal4.7277350.22459K562PRPF8
chr1152706565270723-CDS,intron-Distal4.5505086.18032K562SND1
chr1152706665270699-CDS,intron-Distal3.618705.29881K562ZNF800
chr1152706635270710-CDS,intron-Distal3.5505230.63725K562GEMIN5
chr1152706815270719-CDS,intron-Distal3.13522400.00000K562YBX3
chr1152706685270705-CDS,intron-Distal5.67074400.00000K562RPS3
chr1152705535270591-intron-Distal,intron-Proximal3.843296.31886K562EFTUD2
chr1152704245270503-intron-Distal,intron-Proximal3.1584123.80107K562EFTUD2
chr1152699315270022-intron-Distal5.8655659.74458K562TARDBP
chr1152705925270598-intron-Distal,intron-Proximal6.3194365.87267K562AQR
chr1152699745270016-intron-Distal4.310818.30477K562EIF4G2
chr1152704555270499-intron-Distal,intron-Proximal4.5024616.96694K562BUD13
chr1152705535270558-intron-Distal,intron-Proximal7.2959361.14105K562AQR
chr1152704145270519-intron-Distal,intron-Proximal3.4246221.09164K562PRPF8
chr1152705585270587-intron-Distal,intron-Proximal6.3130872.22608K562AQR
chr1152705415270553-intron-Distal,intron-Proximal4.808249.78712K562AQR
chr1152704105270520-intron-Distal,intron-Proximal3.7480646.47070K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HBG1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HBG1 is not available on ENCORE database.

  • 78 RBPs can affect the levels of HBG1.  








The Knockdown/knockout RNA-Seq assay for HBG1 is not available on ENCORE database.





78 RBPs can affect the gene expression of HBG1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HBG1ENSG00000213934.50.0000036.20790-99999.999999.566207.76060HepG2CCAR1
HBG1ENSG00000213934.52.3174038.18250-4.042407.184605.83240HepG2LARP4
HBG1ENSG00000213934.515.546800.0000099999.999904.695403.78520HepG2TARDBP
HBG1ENSG00000213934.519.771100.0000099999.999906.169305.33420HepG2UTP3
HBG1ENSG00000213934.512.612000.0000099999.999904.000003.37500HepG2ZNF622
HBG1ENSG00000213934.554240.5504022688.687001.2573095.5648092.39980K562AGGF1
HBG1ENSG00000213934.546893.7783036576.920200.358404.904602.84980K562AKAP1
HBG1ENSG00000213934.548852.3689024933.380700.970308.706706.69950K562AKAP8
HBG1ENSG00000213934.576957.1094023609.085301.7046027.7461025.27750K562AKAP8L
HBG1ENSG00000213934.5123907.5655097028.579700.352703.797803.13160K562AQR
HBG1ENSG00000213934.538093.3549024772.517200.620708.044006.36450K562ATP5C1
HBG1ENSG00000213934.5107571.0773084039.363500.356102.806401.82530K562CELF1
HBG1ENSG00000213934.533209.1896043679.42570-0.395404.249201.68130K562DDX28
HBG1ENSG00000213934.527655.8384021827.995600.341304.213603.43180K562DDX47
HBG1ENSG00000213934.512724.1435018638.73050-0.550703.854001.30790K562DDX55
HBG1ENSG00000213934.57418.5396013678.30030-0.882702.603701.30650K562DNAJC21
HBG1ENSG00000213934.570820.1379042320.355100.742707.395405.32860K562EEF2
HBG1ENSG00000213934.533311.5004040887.95940-0.295702.775801.86170K562EFTUD2
HBG1ENSG00000213934.515081.5776046714.99900-1.63110109.17720106.40550K562EIF2S2
HBG1ENSG00000213934.532451.2772043775.55700-0.431903.798702.56810K562EIF3D
HBG1ENSG00000213934.546933.8010031217.233400.5882017.6211015.54410K562EIF3G
HBG1ENSG00000213934.528204.2999038725.56930-0.457403.670302.72880K562EIF4A3
HBG1ENSG00000213934.546374.1885034876.135000.411006.055504.23060K562EIF4B
HBG1ENSG00000213934.516951.8289027690.97990-0.708002.976901.66240K562EXOSC5
HBG1ENSG00000213934.524114.3148036400.72850-0.594106.427503.91310K562FAM120A
HBG1ENSG00000213934.534770.2226018134.615800.939003.183402.27130K562FIP1L1
HBG1ENSG00000213934.513246.2817019161.40520-0.532604.628103.10440K562FKBP4
HBG1ENSG00000213934.55835.653609420.20820-0.6909011.813209.97210K562FMR1
HBG1ENSG00000213934.565822.1432043314.068000.603609.224806.55850K562G3BP1
HBG1ENSG00000213934.517177.7888032955.55250-0.940004.451403.51070K562G3BP2
HBG1ENSG00000213934.527043.4533040993.23070-0.600108.323305.87700K562GEMIN5
HBG1ENSG00000213934.528414.2744018277.672300.636402.514601.43230K562GLRX3
HBG1ENSG00000213934.574052.1969057054.113900.376105.565104.06490K562HNRNPA1
HBG1ENSG00000213934.531534.1496019314.726700.707103.631502.16780K562HNRNPA2B1
HBG1ENSG00000213934.511657.5722022055.03000-0.9198028.8794027.03680K562HNRNPC
HBG1ENSG00000213934.514045.0622019699.05340-0.488108.190206.14150K562HNRNPF
HBG1ENSG00000213934.555254.5372063184.97690-0.193502.267601.45870K562HNRNPU
HBG1ENSG00000213934.562199.9254045333.512900.456203.273702.12350K562IGF2BP2
HBG1ENSG00000213934.554864.8693025053.464701.130808.399406.76010K562KIF1C
HBG1ENSG00000213934.513374.4749019675.06350-0.5569010.416707.44440K562LSM11
HBG1ENSG00000213934.534019.1254047611.97170-0.485002.682101.85480K562MAGOH
HBG1ENSG00000213934.584096.6874047510.550800.8237019.8836017.35650K562MATR3
HBG1ENSG00000213934.57138.836008628.27550-0.273402.262001.47140K562METAP2
HBG1ENSG00000213934.539457.7929019672.691001.004005.995704.51330K562NAA15
HBG1ENSG00000213934.528425.2594021350.343100.4128019.8589018.12110K562NSUN2
HBG1ENSG00000213934.540601.5352016893.606901.2650010.560708.20000K562PABPN1
HBG1ENSG00000213934.531259.3599042357.06500-0.438302.514001.58310K562PCBP2
HBG1ENSG00000213934.548061.4486062522.72960-0.379503.522901.73360K562PKM
HBG1ENSG00000213934.544462.0671070209.32760-0.659106.216404.17810K562PNPT1
HBG1ENSG00000213934.531159.6456020083.332600.633602.725101.30860K562PPP1R8
HBG1ENSG00000213934.513232.8014019775.72530-0.5796011.360209.25730K562PSIP1
HBG1ENSG00000213934.544622.8983074546.13170-0.740307.528306.17960K562PUF60
HBG1ENSG00000213934.538897.4478077688.96810-0.9980011.876309.88460K562PUM2
HBG1ENSG00000213934.570344.9767023410.317401.5872063.2122060.52770K562PUS1
HBG1ENSG00000213934.569780.0968022812.659301.61290121.09670117.39950K562RBM15
HBG1ENSG00000213934.514575.4581018047.99200-0.308304.088302.88010K562RCC2
HBG1ENSG00000213934.539873.4418030746.864600.374904.301902.32750K562RPS10
HBG1ENSG00000213934.570982.9503040679.948300.803106.873404.79140K562RRP9
HBG1ENSG00000213934.563104.9057034045.910200.890209.505906.92460K562SERBP1
HBG1ENSG00000213934.523775.5084021069.218400.174202.265301.52120K562SF3A3
HBG1ENSG00000213934.55989.885408406.68930-0.489002.870201.87810K562SF3B1
HBG1ENSG00000213934.542996.5741034239.939300.328402.378601.58810K562SF3B4
HBG1ENSG00000213934.547542.1230031980.917000.5719014.1468010.77970K562SLTM
HBG1ENSG00000213934.522814.6809028665.12310-0.329303.889101.91560K562SND1
HBG1ENSG00000213934.529099.3451021586.038700.4308019.5886017.43990K562SRPK2
HBG1ENSG00000213934.527164.6823045354.16810-0.739504.786203.86120K562SRSF1
HBG1ENSG00000213934.519080.4264023523.43980-0.302003.762102.50560K562SRSF4
HBG1ENSG00000213934.539237.2170021222.911400.886504.863802.78000K562SUPT6H
HBG1ENSG00000213934.514776.6712019020.30890-0.364203.422702.37750K562TIAL1
HBG1ENSG00000213934.549194.3762035682.938800.4632011.024708.50390K562TROVE2
HBG1ENSG00000213934.523096.6749032969.61050-0.513503.067702.22130K562U2AF2
HBG1ENSG00000213934.511886.9012022638.32160-0.9294044.2427041.81680K562UPF1
HBG1ENSG00000213934.540881.6324060560.80490-0.5669011.010108.07900K562UPF2
HBG1ENSG00000213934.543936.5929023739.078700.888105.026503.10240K562UTP18
HBG1ENSG00000213934.527850.5611019370.733800.523709.907408.21300K562WDR3
HBG1ENSG00000213934.530478.3972020144.436400.597308.231306.84620K562WDR43
HBG1ENSG00000213934.5142053.82400114988.867900.304803.771602.25540K562WRN
HBG1ENSG00000213934.528273.0535041519.23690-0.554407.639005.33460K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HBG1 is not available on ENCORE database.





2 RBPs can affect the splicing of HBG1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSHBG1ENSG00000213934.5chr11-527094252711225270980527112252705975270820-0.052000.000000.00000shorterK562SBDS
A5SSHBG1ENSG00000213934.5chr11-527094252711225270980527112252705975270820-0.059000.000000.00000shorterK562QKI

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for HBG1 is not avaliable on ENCORE database.