H3F3A

General Information

Gene Name       : H3F3A
Gene ID             : ENSG00000163041.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: H3F3A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878H3F3AENSG00000163041.9239.38262.81251.09ENCSR000AEF
HepG2H3F3AENSG00000163041.9187.48320.30253.89ENCSR985KAT
K562H3F3AENSG00000163041.9547.38621.14584.26ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for H3F3A is not avaliable on ENCORE database.



Proteins bound to RNA
  • H3F3A RNA is bound by 15 proteins.  







eCLIP assay for H3F3A is not avaliable on ENCORE database.





15 proteins are bound to H3F3A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1226254962226255049+3'-UTR,intron-Distal3.193683.53952HepG2KHSRP
chr1226254806226254839+3'-UTR,intron-Distal3.242498.24998K562KHSRP
chr1226250483226250513+5'-UTR,intron-Proximal3.9464821.16071K562DDX3X
chr1226251979226252009+5'-UTR,intron-Proximal3.832908.47924K562SF3B4
chr1226250508226250569+5'-UTR,intron-Proximal3.785723.67894HepG2AQR
chr1226250422226250438+5'-UTR,intron-Proximal4.910068.82884K562RPS3
chr1226251947226252053+5'-UTR,intron-Proximal3.110296.53290HepG2BUD13
chr1226250421226250463+5'-UTR,intron-Proximal3.820484.71868K562GEMIN5
chr1226250438226250466+5'-UTR4.495028.22774K562RPS3
chr1226252028226252052+5'-UTR,intron-Proximal3.7916820.11944K562DDX3X
chr1226252162226252181+CDS,intron-Proximal4.505407.56132K562RPS3
chr1226252152226252180+CDS3.7753511.08727K562SND1
chr1226259049226259071+CDS,intron-Proximal4.4375416.87943K562U2AF2
chr1226259035226259079+CDS,intron-Proximal3.9004629.23907K562SF3B4
chr1226253356226253378+CDS,intron-Proximal4.475957.56132K562RPS3
chr1226253466226253557+CDS,intron-Proximal4.8327223.46466HepG2PRPF8
chr1226252163226252214+CDS,intron-Proximal3.488724.57930K562GPKOW
chr1226253489226253595+CDS,intron-Proximal3.568317.06642K562EFTUD2
chr1226252164226252221+CDS,intron-Proximal3.472038.41231K562BUD13
chr1226253356226253381+CDS,intron-Proximal3.4819110.68112K562YBX3
chr1226253304226253376+CDS,intron-Proximal3.722916.86323K562SF3B4
chr1226259047226259082+CDS,intron-Proximal3.092488.97408K562BUD13
chr1226253474226253510+CDS5.3655514.76946K562SND1
chr1226253508226253597+CDS,intron-Proximal3.2076010.09400K562AQR
chr1226253356226253382+CDS,intron-Proximal3.484129.08183K562SND1
chr1226252179226252229+CDS,intron-Proximal4.8731110.08262K562AQR
chr1226259051226259081+CDS,intron-Proximal5.3864515.43241K562SND1
chr1226259051226259069+CDS,intron-Proximal4.4457519.31597K562RPS3
chr1226253466226253537+CDS,intron-Proximal3.1966722.16355K562PRPF8
chr1226252147226252180+CDS4.4867416.96077K562YBX3
chr1226259048226259084+CDS,intron-Proximal3.6343313.60866K562U2AF1
chr1226253308226253376+CDS,intron-Proximal3.476937.59237K562GPKOW
chr1226259071226259085+CDS5.5489818.78695K562U2AF2
chr1226253537226253581+CDS,intron-Proximal4.1972316.36997K562PRPF8
chr1226253485226253510+CDS3.8607916.79888K562RPS3
chr1226259043226259083+CDS,intron-Proximal4.040124.61574K562DDX42
chr1226254978226255005+intron-Distal3.2316716.50619K562KHSRP
chr1226252291226252355+intron-Distal3.546944.14287K562KHSRP
chr1226253111226253157+intron-Distal3.781255.56048K562KHSRP
chr1226259038226259048+intron-Proximal4.7028213.69811K562U2AF1
chr1226250512226250554+intron-Proximal3.866175.28701K562PRPF8
chr1226258997226259035+intron-Proximal4.7188929.43344K562SF3B4
chr1226250512226250580+intron-Proximal4.1469929.84924K562AQR
chr1226259036226259047+intron-Proximal3.330836.98665K562BUD13
chr1226259038226259049+intron-Proximal5.0397017.20890K562U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for H3F3A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for H3F3A is not available on ENCORE database.

  • 109 RBPs can affect the levels of H3F3A.  








The Knockdown/knockout RNA-Seq assay for H3F3A is not available on ENCORE database.





109 RBPs can affect the gene expression of H3F3A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
H3F3AENSG00000163041.51833.547201543.919700.247903.119002.47920HepG2ACO1
H3F3AENSG00000163041.51504.851701200.368300.326002.324301.40960HepG2ADAR
H3F3AENSG00000163041.52338.762703117.34340-0.414603.087302.52970HepG2AKAP1
H3F3AENSG00000163041.51083.560901932.11380-0.8344010.661908.75680HepG2BCCIP
H3F3AENSG00000163041.51088.783801541.50470-0.501605.212104.42270HepG2BOP1
H3F3AENSG00000163041.5995.182601408.06860-0.500704.178602.83360HepG2CPSF7
H3F3AENSG00000163041.51580.667601193.178100.405603.164502.01860HepG2CSTF2
H3F3AENSG00000163041.51769.624002691.09060-0.6047014.3258013.08720HepG2CELF1
H3F3AENSG00000163041.52451.139702893.79490-0.239502.557701.83960HepG2DAZAP1
H3F3AENSG00000163041.5240.900801409.87590-2.5491086.7905083.98980HepG2DDX21
H3F3AENSG00000163041.51007.358701777.29620-0.819108.636306.51680HepG2DDX27
H3F3AENSG00000163041.5864.484901899.76940-1.1359018.4520016.71810HepG2DDX55
H3F3AENSG00000163041.51054.813001378.19940-0.385803.090702.02910HepG2DDX5
H3F3AENSG00000163041.51474.106402565.35720-0.799309.677408.59770HepG2DDX6
H3F3AENSG00000163041.51818.300501477.078600.299701.931101.34990HepG2DKC1
H3F3AENSG00000163041.5957.742201197.99680-0.322904.328903.54610HepG2DNAJC2
H3F3AENSG00000163041.51533.601601207.144600.345202.526601.64220HepG2EEF2
H3F3AENSG00000163041.51454.339102465.87840-0.761709.963708.87880HepG2EIF2S1
H3F3AENSG00000163041.51268.030702724.95880-1.1036017.5412015.94320HepG2EIF4A3
H3F3AENSG00000163041.51996.177701508.568000.404004.458403.40330HepG2EWSR1
H3F3AENSG00000163041.52104.056102749.75240-0.386103.163102.42400HepG2FXR1
H3F3AENSG00000163041.51701.828902550.59700-0.583705.877304.92280HepG2G3BP1
H3F3AENSG00000163041.51160.568201408.63760-0.279503.090202.33500HepG2HNRNPF
H3F3AENSG00000163041.51068.034201530.95780-0.519504.866004.05520HepG2HNRNPLL
H3F3AENSG00000163041.51137.125201387.10380-0.286702.383501.70950HepG2IGF2BP1
H3F3AENSG00000163041.51505.411802592.55440-0.7842010.879409.63410HepG2IGF2BP2
H3F3AENSG00000163041.51928.063002607.80080-0.435702.866701.84470HepG2KHSRP
H3F3AENSG00000163041.51295.398202750.71410-1.0864019.1810017.53880HepG2MAGOH
H3F3AENSG00000163041.51958.383302766.04720-0.498203.439302.74220HepG2MATR3
H3F3AENSG00000163041.5615.745701397.35460-1.1823013.4471011.80520HepG2MSI2
H3F3AENSG00000163041.52256.393202831.15240-0.327402.321201.73860HepG2NCBP2
H3F3AENSG00000163041.51552.354402869.46970-0.8863024.7951022.68730HepG2NOL12
H3F3AENSG00000163041.5876.871001744.98690-0.992804.768403.31130HepG2NONO
H3F3AENSG00000163041.51633.473602521.09310-0.626107.002005.86040HepG2PABPC4
H3F3AENSG00000163041.51553.133901334.705200.218602.116501.36780HepG2PARN
H3F3AENSG00000163041.51394.229602219.05040-0.670504.809804.04450HepG2PCBP1
H3F3AENSG00000163041.51568.519202257.76320-0.525503.386202.79360HepG2PTBP1
H3F3AENSG00000163041.52063.801702907.60780-0.494505.025404.27430HepG2PUM1
H3F3AENSG00000163041.51573.667002905.52680-0.8847023.2246021.40090HepG2PUM2
H3F3AENSG00000163041.51318.527101572.56300-0.254203.024102.38740HepG2PUS1
H3F3AENSG00000163041.5563.965601532.81380-1.4425014.5504013.05100HepG2RAVER1
H3F3AENSG00000163041.51159.476201517.48030-0.388203.533302.77700HepG2RPLP0
H3F3AENSG00000163041.5732.62400953.52100-0.380202.985002.35030HepG2RPS19
H3F3AENSG00000163041.51031.836101200.81450-0.218802.085901.51360HepG2SAFB2
H3F3AENSG00000163041.52255.819601630.502400.468202.434801.50140HepG2SRSF3
H3F3AENSG00000163041.51095.513001383.94740-0.337204.106003.28440HepG2SRSF7
H3F3AENSG00000163041.51325.445101996.14710-0.590702.929802.36520HepG2SRSF9
H3F3AENSG00000163041.5601.791901153.25910-0.938408.408406.39370HepG2STAU1
H3F3AENSG00000163041.5999.201501488.37380-0.574904.430603.00400HepG2STIP1
H3F3AENSG00000163041.5765.389201165.85790-0.607106.195704.82460HepG2SUPT6H
H3F3AENSG00000163041.51125.510201891.03550-0.748605.502504.60090HepG2SUPV3L1
H3F3AENSG00000163041.51204.876601492.17100-0.308502.194301.53790HepG2TARDBP
H3F3AENSG00000163041.5785.988701267.40000-0.689307.119205.64740HepG2TFIP11
H3F3AENSG00000163041.5694.417901310.30520-0.9160018.5026017.42060HepG2TIAL1
H3F3AENSG00000163041.5742.431501321.91780-0.8323020.1612018.81560HepG2TRIM56
H3F3AENSG00000163041.52258.046902675.87310-0.244902.211301.43610HepG2TUFM
H3F3AENSG00000163041.51830.260002832.29560-0.629903.660402.69070HepG2UBE2L3
H3F3AENSG00000163041.5600.777701116.98660-0.8947012.0003010.43710HepG2UCHL5
H3F3AENSG00000163041.51206.011001861.52180-0.626207.734906.53500HepG2XRN2
H3F3AENSG00000163041.51248.745001541.55070-0.303904.522203.86700HepG2ZNF622
H3F3AENSG00000163041.55014.853702697.324200.8946040.4956038.37200K562AGGF1
H3F3AENSG00000163041.56088.666502806.650401.1172013.0182011.45010K562AKAP8L
H3F3AENSG00000163041.52754.008903454.83720-0.327104.273601.64180K562ASCC1
H3F3AENSG00000163041.54013.744902944.780700.446707.964206.29420K562ATP5C1
H3F3AENSG00000163041.51597.667601988.32560-0.315602.358401.56000K562BOP1
H3F3AENSG00000163041.51406.200602114.11450-0.588308.855807.43530K562CPSF6
H3F3AENSG00000163041.52848.124104113.30100-0.5303013.6875012.34860K562DDX47
H3F3AENSG00000163041.5937.022701240.47560-0.404703.026601.63560K562DHX30
H3F3AENSG00000163041.53819.587202724.509400.487303.772802.24700K562EEF2
H3F3AENSG00000163041.53263.213603935.36200-0.270203.042301.76160K562EIF2S1
H3F3AENSG00000163041.53160.941103726.76650-0.237602.928702.19230K562EIF2S2
H3F3AENSG00000163041.5788.690601127.08840-0.515102.748301.74940K562EIF3A
H3F3AENSG00000163041.51980.845402901.83980-0.550905.703204.57520K562EIF3G
H3F3AENSG00000163041.51152.614503742.93580-1.6993040.0206036.64200K562EIF4A3
H3F3AENSG00000163041.52666.553903370.82340-0.338104.031302.59050K562EIF4B
H3F3AENSG00000163041.52176.237903267.27210-0.586306.776304.55620K562EWSR1
H3F3AENSG00000163041.51578.071802343.44940-0.570505.223502.89270K562FAM120A
H3F3AENSG00000163041.53434.507502289.537400.584908.379306.81460K562FIP1L1
H3F3AENSG00000163041.52558.861003531.13410-0.464607.596004.53730K562FUBP3
H3F3AENSG00000163041.51838.446202639.03400-0.521505.477003.45690K562GEMIN5
H3F3AENSG00000163041.55755.879303770.519000.610202.823501.58970K562HNRNPA2B1
H3F3AENSG00000163041.51394.826702441.97560-0.8080015.8086014.46510K562HNRNPC
H3F3AENSG00000163041.51581.768902180.52780-0.463103.575702.26470K562HNRNPF
H3F3AENSG00000163041.53007.601903717.34160-0.305703.108801.98300K562HNRNPL
H3F3AENSG00000163041.53869.659704763.22380-0.299704.147903.04600K562HNRNPU
H3F3AENSG00000163041.55293.414002978.689600.829409.765207.96010K562KIF1C
H3F3AENSG00000163041.51804.062802364.26380-0.390104.004902.27660K562LARP7
H3F3AENSG00000163041.53250.259304732.99930-0.542204.406003.33960K562MAGOH
H3F3AENSG00000163041.54342.101903336.866300.379804.604003.36990K562MBNL1
H3F3AENSG00000163041.51623.337701970.22080-0.279402.373201.56440K562METAP2
H3F3AENSG00000163041.52073.682802607.76210-0.330603.070302.22110K562MTPAP
H3F3AENSG00000163041.55008.271502338.890001.0984016.0581013.38380K562NAA15
H3F3AENSG00000163041.52735.920803737.39400-0.450003.647102.21590K562NCBP2
H3F3AENSG00000163041.52404.140302897.18940-0.269102.447701.74140K562NSUN2
H3F3AENSG00000163041.51714.530602404.11320-0.487704.813602.70580K562NUSAP1
H3F3AENSG00000163041.54991.167403298.802300.597302.689701.71610K562PABPN1
H3F3AENSG00000163041.52731.013702219.579400.299102.036501.32420K562PCBP3
H3F3AENSG00000163041.51864.380902384.00370-0.354703.404301.79880K562PHF6
H3F3AENSG00000163041.52267.542201702.438200.413405.367304.25410K562POLR2G
H3F3AENSG00000163041.53266.704402599.190000.329702.840402.00800K562PPIG
H3F3AENSG00000163041.51500.783002189.44260-0.544806.629205.13010K562PSIP1
H3F3AENSG00000163041.53198.963104598.26920-0.523506.446505.46820K562PTBP1
H3F3AENSG00000163041.54588.318705693.76440-0.311405.505304.13170K562PUM2
H3F3AENSG00000163041.57032.757202783.696701.3370038.6421036.56600K562PUS1
H3F3AENSG00000163041.51894.819002674.95000-0.497502.767601.35370K562RAVER1
H3F3AENSG00000163041.55982.082702712.069601.1412017.8785016.34390K562RBM15
H3F3AENSG00000163041.53857.501104709.65480-0.288003.011301.33240K562RBM17
H3F3AENSG00000163041.51121.187401997.36880-0.8331016.6139014.21380K562RCC2
H3F3AENSG00000163041.51707.594702608.96600-0.611506.421705.16710K562RPS19
H3F3AENSG00000163041.51538.529002178.09680-0.501504.679703.33180K562RPS3
H3F3AENSG00000163041.51900.728901517.085800.325202.407001.40100K562SAFB
H3F3AENSG00000163041.52293.060902859.18590-0.318303.133502.26620K562SF3A3
H3F3AENSG00000163041.51970.522903678.88940-0.900705.008003.04900K562SFPQ
H3F3AENSG00000163041.51248.454401893.47440-0.600904.596803.17960K562SRFBP1
H3F3AENSG00000163041.51802.607702558.08350-0.505005.823603.33850K562SRP68
H3F3AENSG00000163041.51617.397502103.01520-0.378802.668301.64020K562SRSF4
H3F3AENSG00000163041.53490.343404256.61350-0.286302.384101.42020K562SRSF5
H3F3AENSG00000163041.52514.203102993.21620-0.251603.076001.71360K562SSB
H3F3AENSG00000163041.54404.695703003.903500.552107.266205.00910K562SSRP1
H3F3AENSG00000163041.51310.519302479.71990-0.9200013.6563011.36780K562SUPV3L1
H3F3AENSG00000163041.53461.126004562.45860-0.398602.506701.83050K562TARDBP
H3F3AENSG00000163041.51629.963202260.63870-0.471904.293302.21990K562TFIP11
H3F3AENSG00000163041.53576.609104400.89080-0.299202.804801.98110K562TIA1
H3F3AENSG00000163041.51266.478802105.90350-0.733609.181807.40440K562TIAL1
H3F3AENSG00000163041.51203.185402237.01150-0.8947016.6459013.91370K562TRIM56
H3F3AENSG00000163041.52023.133202624.65550-0.375503.321502.19910K562UCHL5
H3F3AENSG00000163041.52183.542503071.97270-0.492505.983504.97290K562UPF1
H3F3AENSG00000163041.51819.581702672.91280-0.554806.389204.30340K562XRN2
H3F3AENSG00000163041.52307.810901815.576600.346003.568401.47440K562ZNF800
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for H3F3A is not available on ENCORE database.





4 RBPs can affect the splicing of H3F3A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RIH3F3AENSG00000163041.5chr1+2262516772262521802262516772262517662262520292262521800.095000.001540.01092includedK562PUS1
MXEH3F3AENSG00000163041.5chr1+2262520292262521802262533562262535102262504352262505122262590512262592240.129000.000000.000081includedK562TARDBP
MXEH3F3AENSG00000163041.5chr1+226252029226252180226253435226253510226250435226250512226259051226259224-0.112000.000020.011932includedK562SDAD1
MXEH3F3AENSG00000163041.5chr1+2262520292262521802262534352262535102262504352262505122262590512262592240.122000.000010.000381includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for H3F3A is not avaliable on ENCORE database.