GYPC

General Information

Gene Name : GYPC
Gene ID : ENSG00000136732.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GYPC)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GYPC	ENSG00000136732.15	16.67	49.60	33.14	ENCSR000AEF
HepG2	GYPC	ENSG00000136732.15	0.00	0.02	0.01	ENCSR985KAT
K562	GYPC	ENSG00000136732.15	145.91	142.23	144.07	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GYPC is not avaliable on ENCORE database.

Proteins bound to RNA

GYPC RNA is bound by 28 proteins.

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eCLIP assay for GYPC is not avaliable on ENCORE database.

28 proteins are bound to GYPC RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	127454115	127454142	+	3'-UTR	6.30324	400.00000	K562	PABPC4
chr2	127454076	127454115	+	3'-UTR	6.02436	400.00000	K562	PABPC4
chr2	127453522	127453530	+	CDS	5.85415	400.00000	K562	LIN28B
chr2	127453530	127453569	+	CDS	6.04358	400.00000	K562	LIN28B
chr2	127454142	127454176	+	3'-UTR	5.23066	66.26522	K562	PABPC4
chr2	127424359	127424408	+	intron-Distal	5.38791	49.09991	K562	AGGF1
chr2	127429861	127430051	+	intron-Distal	4.70559	37.80019	K562	AGGF1
chr2	127451453	127451462	+	CDS	3.80008	37.15332	K562	YBX3
chr2	127451441	127451453	+	CDS	3.87972	36.99034	K562	YBX3
chr2	127454086	127454170	+	3'-UTR	5.50493	36.84585	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 112 entries

eCLIP assay for GYPC is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GYPC is not available on ENCORE database.
64 RBPs can affect the levels of GYPC.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GYPC is not available on ENCORE database.

64 RBPs can affect the gene expression of GYPC :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GYPC	ENSG00000136732.10	8406.58780	5868.24790	0.51850	12.42210	11.16890	K562	RBM15
GYPC	ENSG00000136732.10	6773.04770	4133.51190	0.71230	12.76320	10.81150	K562	FIP1L1
GYPC	ENSG00000136732.10	4677.63010	2958.18580	0.66100	11.29450	9.09910	K562	TRIM56
GYPC	ENSG00000136732.10	6431.84770	4854.15010	0.40590	9.72300	8.59020	K562	DDX47
GYPC	ENSG00000136732.10	1735.53170	1149.02740	0.59490	9.99350	8.47540	K562	EIF3G
GYPC	ENSG00000136732.10	3942.00930	5010.25730	-0.34600	9.12280	7.53280	K562	SRPK2
GYPC	ENSG00000136732.10	4461.39210	2806.89150	0.66840	8.67070	6.66720	K562	SRSF4
GYPC	ENSG00000136732.10	5288.14200	3742.63280	0.49860	7.56120	5.80660	K562	SAFB
GYPC	ENSG00000136732.10	2968.66790	2158.28820	0.45980	8.01740	5.56880	K562	EWSR1
GYPC	ENSG00000136732.10	5885.16930	4956.20410	0.24770	6.65230	5.56280	K562	NSUN2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 65 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GYPC is not available on ENCORE database.

7 RBPs can affect the splicing of GYPC :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	GYPC	ENSG00000136732.10	chr2	+	127447830	127447887			127413508	127413888	127451439	127451523	-0.10700	0.00000	0.00001	excluded	K562	SF3B4
SE	GYPC	ENSG00000136732.10	chr2	+	127447830	127447887			127413508	127413888	127451439	127451523	-0.11100	0.00002	0.00163	excluded	K562	HNRNPK
MXE	GYPC	ENSG00000136732.10	chr2	+	127433207	127433325	127440300	127440450	127413764	127413888	127447830	127447887	-0.14000	0.00018	0.04304	2included	K562	GPKOW
SE	GYPC	ENSG00000136732.10	chr2	+	127443403	127444221			127440300	127440450	127447830	127447887	0.10500	0.00080	0.05407	included	K562	HNRNPL
MXE	GYPC	ENSG00000136732.10	chr2	+	127443403	127444221	127447275	127447365	127440286	127440450	127447830	127447887	-0.15200	0.00370	0.05528	2included	K562	PUS1
MXE	GYPC	ENSG00000136732.10	chr2	+	127433207	127433325	127443403	127444221	127413764	127413888	127447830	127447887	-0.75000	0.00416	0.07120	2included	K562	SUPV3L1
SE	GYPC	ENSG00000136732.10	chr2	+	127447830	127447887			127413508	127413888	127451439	127451523	-0.05700	0.00608	0.08838	excluded	K562	SRSF1

Showing 1 to 7 of 7 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GYPC

General Information

Functions

Localization

Domains (AlphaFold: GYPC)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GYPC is not avaliable on ENCORE database.

28 proteins are bound to GYPC RNA:

eCLIP assay for GYPC is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GYPC is not available on ENCORE database.

64 RBPs can affect the gene expression of GYPC :

The Knockdown/knockout RNA-Seq assay for GYPC is not available on ENCORE database.

7 RBPs can affect the splicing of GYPC :

The Knockdown/knockout RNA-Seq assay for GYPC is not avaliable on ENCORE database.