GYPC

General Information

Gene Name       : GYPC
Gene ID             : ENSG00000136732.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GYPC)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GYPCENSG00000136732.1516.6749.6033.14ENCSR000AEF
HepG2GYPCENSG00000136732.150.000.020.01ENCSR985KAT
K562GYPCENSG00000136732.15145.91142.23144.07ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GYPC is not avaliable on ENCORE database.



Proteins bound to RNA
  • GYPC RNA is bound by 28 proteins.  







eCLIP assay for GYPC is not avaliable on ENCORE database.





28 proteins are bound to GYPC RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2127453712127453721+3'-UTR,CDS3.167834.74667K562PABPC4
chr2127453953127454000+3'-UTR4.556764.48994K562RBM15
chr2127454087127454148+3'-UTR3.748836.54157K562METAP2
chr2127453819127453897+3'-UTR3.1295711.80844K562UPF1
chr2127453949127454015+3'-UTR3.187185.31732K562METAP2
chr2127454086127454170+3'-UTR5.5049336.84585K562UPF1
chr2127453721127453765+3'-UTR3.3582525.00576K562PABPC4
chr2127454083127454157+3'-UTR3.507705.54762K562ZC3H11A
chr2127454115127454142+3'-UTR6.30324400.00000K562PABPC4
chr2127447832127447856+3'-UTR,CDS,intron-Distal3.3017518.64528K562YBX3
chr2127454142127454176+3'-UTR5.2306666.26522K562PABPC4
chr2127453871127453947+3'-UTR4.638409.11052K562METAP2
chr2127453888127453944+3'-UTR3.786145.57868K562DDX6
chr2127454076127454115+3'-UTR6.02436400.00000K562PABPC4
chr2127453711127453768+3'-UTR,CDS3.9269010.49594K562METAP2
chr2127454170127454222+3'-UTR3.3606312.24086K562UPF1
chr2127447830127447882+3'-UTR,CDS,intron-Distal,intron-Proximal3.405719.16733K562METAP2
chr2127454046127454086+3'-UTR4.2324811.97857K562UPF1
chr2127453897127453942+3'-UTR3.478229.30182K562UPF1
chr2127454083127454173+3'-UTR3.6986013.76008K562DDX6
chr2127413880127413935+5'-UTR,CDS,intron-Proximal3.810835.83621K562AQR
chr2127413816127413884+5'-UTR,CDS3.179994.63567K562DROSHA
chr2127413786127413872+5'-UTR,CDS4.0234828.12925K562DDX3X
chr2127413727127413786+5'-UTR4.065999.85652K562DDX3X
chr2127413737127413790+5'-UTR3.418714.80598K562METAP2
chr2127453626127453680+CDS4.8353226.35599K562LIN28B
chr2127453573127453599+CDS3.7129025.91768K562YBX3
chr2127453528127453575+CDS3.2535923.69873K562PABPC4
chr2127451441127451453+CDS3.8797236.99034K562YBX3
chr2127447879127447887+CDS,intron-Distal3.7347528.20034K562YBX3
chr2127451519127451599+CDS,intron-Proximal4.9645411.42662K562AQR
chr2127453628127453641+CDS4.4393027.14704K562YBX3
chr2127451476127451485+CDS3.1435813.58143K562YBX3
chr2127453522127453530+CDS5.85415400.00000K562LIN28B
chr2127451485127451502+CDS3.5757915.07095K562YBX3
chr2127451439127451441+CDS,intron-Proximal3.6998428.20034K562YBX3
chr2127451470127451476+CDS3.4375719.62011K562YBX3
chr2127453599127453611+CDS3.8966927.76417K562YBX3
chr2127453530127453569+CDS6.04358400.00000K562LIN28B
chr2127451442127451494+CDS3.6265710.97184K562LIN28B
chr2127453570127453587+CDS3.0087216.16970K562LIN28B
chr2127453641127453675+CDS3.2251720.50923K562YBX3
chr2127451453127451462+CDS3.8000837.15332K562YBX3
chr2127453611127453627+CDS4.4987429.42633K562YBX3
chr2127447868127447879+CDS,intron-Distal3.7273027.29276K562YBX3
chr2127451462127451469+CDS3.5195928.40263K562YBX3
chr2127435191127435235+intron-Distal5.588348.53131K562EIF4G2
chr2127435040127435214+intron-Distal5.092478.49499K562KHSRP
chr2127435082127435180+intron-Distal6.6417420.42309K562EIF4G2
chr2127434759127434930+intron-Distal5.1106028.41937K562TARDBP
chr2127437994127438136+intron-Distal3.9448310.67559K562SLTM
chr2127430912127430975+intron-Distal3.599646.87839K562HNRNPL
chr2127443841127443884+intron-Distal3.997343.15006K562RBM15
chr2127431213127431240+intron-Distal3.819043.59673K562HNRNPL
chr2127418249127418313+intron-Distal3.891333.34601K562HNRNPK
chr2127421547127421625+intron-Distal5.196068.52796K562MATR3
chr2127429428127429485+intron-Distal4.353863.48173K562GTF2F1
chr2127431317127431440+intron-Distal3.2839623.03870K562AGGF1
chr2127430969127431054+intron-Distal3.4042113.68674K562AGGF1
chr2127424318127424356+intron-Distal4.072686.89427K562HNRNPL
chr2127414848127414921+intron-Distal4.553185.42636K562NONO
chr2127424153127424223+intron-Distal5.4325112.72743K562HNRNPL
chr2127414856127414913+intron-Distal3.847643.84914K562SLTM
chr2127431313127431421+intron-Distal4.0331014.07057K562HNRNPL
chr2127430055127430139+intron-Distal4.0609913.90511K562AGGF1
chr2127414183127414229+intron-Distal4.450805.95597K562EFTUD2
chr2127421552127421652+intron-Distal4.8259315.70148K562PTBP1
chr2127438434127438564+intron-Distal3.819128.89527K562SLTM
chr2127440226127440263+intron-Distal3.479163.84914K562SLTM
chr2127421489127421552+intron-Distal3.837577.20117K562PTBP1
chr2127424345127424359+intron-Distal5.1720915.26370K562AGGF1
chr2127424348127424421+intron-Distal4.428654.07596K562GTF2F1
chr2127434300127434433+intron-Distal5.0621625.99239K562EIF4G2
chr2127438210127438264+intron-Distal4.218984.12822K562YWHAG
chr2127429961127430043+intron-Distal3.089748.99749K562HNRNPL
chr2127437757127437874+intron-Distal3.766084.28912K562SAFB2
chr2127424359127424408+intron-Distal5.3879149.09991K562AGGF1
chr2127424408127424436+intron-Distal4.3771820.02270K562AGGF1
chr2127430975127431028+intron-Distal3.103724.12689K562HNRNPL
chr2127430403127430460+intron-Distal3.342413.62826K562HNRNPL
chr2127430112127430139+intron-Distal4.020863.31153K562GTF2F1
chr2127434992127435045+intron-Distal5.8597010.00047K562EIF4G2
chr2127429861127430051+intron-Distal4.7055937.80019K562AGGF1
chr2127437164127437208+intron-Distal3.358663.12654K562SLTM
chr2127438205127438245+intron-Distal3.309244.34872K562SLTM
chr2127422535127422604+intron-Distal4.239004.47026K562MATR3
chr2127434976127435205+intron-Distal4.9071129.92623K562TARDBP
chr2127434325127434423+intron-Distal3.313474.87629K562FUS
chr2127434933127435022+intron-Distal3.045453.00209K562FUS
chr2127443749127443795+intron-Distal4.497424.14527K562SLTM
chr2127424164127424240+intron-Distal4.530414.06667K562GTF2F1
chr2127429866127429911+intron-Distal4.112813.80299K562HNRNPL
chr2127421459127421547+intron-Distal4.997567.35792K562MATR3
chr2127435117127435227+intron-Distal4.072275.63180K562AATF
chr2127439915127439995+intron-Distal3.401106.61592K562SLTM
chr2127430161127430218+intron-Distal4.3950613.16576K562AGGF1
chr2127424356127424405+intron-Distal4.1634914.71648K562HNRNPL
chr2127422514127422627+intron-Distal4.2254130.05816K562PTBP1
chr2127438276127438307+intron-Distal3.273693.12654K562SLTM
chr2127442026127442159+intron-Distal3.881903.34627K562HNRNPK
chr2127435265127435344+intron-Distal4.8557714.11565K562EIF4G2
chr2127435022127435094+intron-Distal3.980344.52383K562FUS
chr2127438210127438305+intron-Distal4.287744.30215K562SAFB2
chr2127434692127434759+intron-Distal4.8722313.81845K562TARDBP
chr2127435094127435205+intron-Distal3.594665.98857K562FUS
chr2127428305127428384+intron-Distal3.114103.40400K562HNRNPL
chr2127424164127424225+intron-Distal6.5558717.08587K562AGGF1
chr2127434852127434893+intron-Distal5.301968.04355K562EIF4G2
chr2127424328127424345+intron-Distal4.6499014.26744K562AGGF1
chr2127424436127424491+intron-Distal4.6189218.93032K562AGGF1
chr2127418451127418567+intron-Distal3.869139.50366K562HNRNPK
chr2127437788127437901+intron-Distal3.463305.65349K562UCHL5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GYPC is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GYPC is not available on ENCORE database.

  • 64 RBPs can affect the levels of GYPC.  








The Knockdown/knockout RNA-Seq assay for GYPC is not available on ENCORE database.





64 RBPs can affect the gene expression of GYPC :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GYPCENSG00000136732.1010.064300.0000099999.999902.965202.21750HepG2TARDBP
GYPCENSG00000136732.101936.544202951.22420-0.607806.756304.86110K562AARS
GYPCENSG00000136732.106606.269005836.351700.178702.662402.10220K562AGGF1
GYPCENSG00000136732.102896.048802335.619200.310204.347102.41610K562AKAP1
GYPCENSG00000136732.108873.595606413.441300.468306.660304.97230K562AKAP8
GYPCENSG00000136732.105312.995106372.15190-0.262302.140501.34420K562ATP5C1
GYPCENSG00000136732.104552.150102351.536700.952804.191302.83530K562CCAR1
GYPCENSG00000136732.103406.310504490.58390-0.398705.527604.42710K562CPSF6
GYPCENSG00000136732.108514.477106847.641400.314203.026601.48950K562DDX19B
GYPCENSG00000136732.105172.091304062.497100.348306.055304.22430K562DDX21
GYPCENSG00000136732.102870.379702257.493600.346405.645903.75680K562DDX27
GYPCENSG00000136732.106431.847704854.150100.405909.723008.59020K562DDX47
GYPCENSG00000136732.104312.303402632.855300.711705.694603.66280K562DHX30
GYPCENSG00000136732.102973.758802157.325400.462903.024801.68150K562EEF2
GYPCENSG00000136732.102893.375503373.39390-0.221402.032701.39930K562EIF2S2
GYPCENSG00000136732.103625.795502391.792800.600102.217901.32950K562EIF3A
GYPCENSG00000136732.101735.531701149.027400.594909.993508.47540K562EIF3G
GYPCENSG00000136732.102633.145002226.674700.241802.584301.48140K562EIF4B
GYPCENSG00000136732.106466.429005460.069300.243902.888401.93010K562EIF4G2
GYPCENSG00000136732.102968.667902158.288200.459808.017405.56880K562EWSR1
GYPCENSG00000136732.106773.047704133.511900.7123012.7632010.81150K562FIP1L1
GYPCENSG00000136732.103442.269404569.35470-0.408604.419803.33710K562FMR1
GYPCENSG00000136732.102949.244303873.06700-0.393103.402502.38020K562FTO
GYPCENSG00000136732.102099.603302571.34290-0.292403.706803.02160K562FXR1
GYPCENSG00000136732.102214.762701741.317800.346903.454701.81930K562G3BP1
GYPCENSG00000136732.10683.541701321.80220-0.951405.040204.02120K562G3BP2
GYPCENSG00000136732.105919.696004242.650100.480504.850203.35910K562GLRX3
GYPCENSG00000136732.105586.478804494.918900.313503.330602.50440K562GRSF1
GYPCENSG00000136732.104692.848003808.289400.301203.353102.16760K562HNRNPA1
GYPCENSG00000136732.104188.486503227.579900.375903.779103.09480K562HNRNPC
GYPCENSG00000136732.101334.595801818.82850-0.446602.728301.50620K562HNRNPK
GYPCENSG00000136732.102738.481501822.070500.587702.895901.83950K562IGF2BP2
GYPCENSG00000136732.107937.719906169.432700.363504.709903.19590K562MAK16
GYPCENSG00000136732.103394.338304184.91650-0.302102.922702.02070K562METAP2
GYPCENSG00000136732.105885.169304956.204100.247706.652305.56280K562NSUN2
GYPCENSG00000136732.106913.749404148.591300.736703.147702.07190K562PABPN1
GYPCENSG00000136732.101231.482701702.95300-0.467603.957502.78140K562PCBP2
GYPCENSG00000136732.106530.757104692.130700.476903.834202.84540K562PPIG
GYPCENSG00000136732.104316.818105957.20410-0.464706.824905.54220K562PUF60
GYPCENSG00000136732.105222.061106337.43980-0.279303.793902.52630K562PUM1
GYPCENSG00000136732.104146.131302509.127100.724505.106702.40430K562RBFOX2
GYPCENSG00000136732.108406.587805868.247900.5185012.4221011.16890K562RBM15
GYPCENSG00000136732.103161.262302072.919800.608704.312002.64650K562RRP9
GYPCENSG00000136732.105288.142003742.632800.498607.561205.80660K562SAFB
GYPCENSG00000136732.103623.446004890.35220-0.432606.599605.38770K562SF3A3
GYPCENSG00000136732.103135.239604077.79680-0.379202.971501.96220K562SF3B1
GYPCENSG00000136732.103278.198802503.909400.388604.102502.78000K562SRFBP1
GYPCENSG00000136732.103942.009305010.25730-0.346009.122807.53280K562SRPK2
GYPCENSG00000136732.104461.392102806.891500.668408.670706.66720K562SRSF4
GYPCENSG00000136732.102487.805201722.161000.530606.408204.69950K562SRSF5
GYPCENSG00000136732.101477.052901185.230000.317503.288401.87110K562SSB
GYPCENSG00000136732.103669.145505423.65760-0.563807.934905.55530K562SSRP1
GYPCENSG00000136732.103330.234604212.73420-0.339104.338803.30430K562SYNCRIP
GYPCENSG00000136732.103009.578301845.073200.705806.429605.30960K562TARDBP
GYPCENSG00000136732.102551.975801779.832200.519803.764002.78850K562TIA1
GYPCENSG00000136732.103956.510002783.489100.507202.117001.30950K562TIAL1
GYPCENSG00000136732.102325.212001747.001600.412403.757702.45540K562TRA2A
GYPCENSG00000136732.104677.630102958.185800.6610011.294509.09910K562TRIM56
GYPCENSG00000136732.106779.073605405.796100.326505.813103.94350K562TROVE2
GYPCENSG00000136732.10856.465901279.78960-0.579402.770801.67800K562U2AF1
GYPCENSG00000136732.10804.832501322.22380-0.716203.981103.02020K562U2AF2
GYPCENSG00000136732.105756.269804496.688000.356204.397503.28550K562WDR3
GYPCENSG00000136732.105420.268504675.940400.213002.724801.88430K562WDR43
GYPCENSG00000136732.107023.282105123.438400.454906.868404.83460K562WRN
GYPCENSG00000136732.106812.917304869.992600.484306.840505.38680K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GYPC is not available on ENCORE database.





7 RBPs can affect the splicing of GYPC :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGYPCENSG00000136732.10chr2+127447830127447887127413508127413888127451439127451523-0.057000.006080.08838excludedK562SRSF1
SEGYPCENSG00000136732.10chr2+127447830127447887127413508127413888127451439127451523-0.107000.000000.00001excludedK562SF3B4
SEGYPCENSG00000136732.10chr2+1274434031274442211274403001274404501274478301274478870.105000.000800.05407includedK562HNRNPL
SEGYPCENSG00000136732.10chr2+127447830127447887127413508127413888127451439127451523-0.111000.000020.00163excludedK562HNRNPK
MXEGYPCENSG00000136732.10chr2+127443403127444221127447275127447365127440286127440450127447830127447887-0.152000.003700.055282includedK562PUS1
MXEGYPCENSG00000136732.10chr2+127433207127433325127440300127440450127413764127413888127447830127447887-0.140000.000180.043042includedK562GPKOW
MXEGYPCENSG00000136732.10chr2+127433207127433325127443403127444221127413764127413888127447830127447887-0.750000.004160.071202includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GYPC is not avaliable on ENCORE database.