GOPC

General Information

Gene Name       : GOPC
Gene ID             : ENSG00000047932.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GOPC)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GOPCENSG00000047932.1318.1214.4916.30ENCSR000AEF
HepG2GOPCENSG00000047932.1317.7132.8625.29ENCSR985KAT
K562GOPCENSG00000047932.1315.7218.1916.96ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GOPC is not avaliable on ENCORE database.



Proteins bound to RNA
  • GOPC RNA is bound by 24 proteins.  







eCLIP assay for GOPC is not avaliable on ENCORE database.





24 proteins are bound to GOPC RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6117881497117881596-3'-UTR,intron-Distal5.2673515.21006K562PUM2
chr6117883003117883050-3'-UTR,intron-Distal4.166536.59996K562PUM2
chr6117881986117882082-3'-UTR,intron-Distal3.136675.78757K562UPF1
chr6117882858117882981-3'-UTR,intron-Distal3.764248.99882HepG2KHSRP
chr6117881346117881449-3'-UTR,intron-Distal,intron-Proximal,polyA_site4.257815.25062HepG2CSTF2
chr6117882878117882980-3'-UTR,intron-Distal5.7383822.61791HepG2FUBP3
chr6117923466117923587-5'-UTR,intron-Distal,intron-Proximal3.793996.86357HepG2EIF3H
chr6117923604117923669-5'-UTR,intron-Distal,intron-Proximal4.004116.62281HepG2NCBP2
chr6117923580117923648-5'-UTR,intron-Distal,intron-Proximal3.766235.01580HepG2DDX3X
chr6117923548117923618-5'-UTR,intron-Distal,intron-Proximal3.280317.39156HepG2XPO5
chr6117923451117923580-5'-UTR,intron-Distal,intron-Proximal3.814198.94209HepG2DDX3X
chr6117923405117923477-5'-UTR,CDS,intron-Distal3.703014.13694HepG2RBM15
chr6117898586117898645-CDS,intron-Distal,intron-Proximal4.579845.54761HepG2U2AF1
chr6117890849117890961-CDS,intron-Distal,intron-Proximal4.276046.92290HepG2AQR
chr6117923291117923364-CDS,intron-Distal3.617854.51666K562RBM15
chr6117923133117923213-CDS,intron-Distal3.831513.93112K562RBM15
chr6117898571117898650-CDS,intron-Distal,intron-Proximal3.3905911.26081HepG2U2AF2
chr6117888017117888127-CDS,intron-Distal3.9125015.57800HepG2BCLAF1
chr6117923159117923266-CDS,intron-Distal3.304768.53471HepG2GRWD1
chr6117894730117894795-CDS,intron-Distal,intron-Proximal3.007554.23325HepG2BCLAF1
chr6117923119117923186-CDS,intron-Distal6.1815616.30191HepG2PRPF8
chr6117923189117923277-CDS,intron-Distal3.425876.27819HepG2PPIG
chr6117896361117896455-CDS,intron-Distal4.062968.51432HepG2BCLAF1
chr6117923135117923189-CDS,intron-Distal3.207234.24993HepG2PPIG
chr6117888065117888177-CDS,intron-Distal3.204154.74755K562ZNF622
chr6117896575117896686-CDS,intron-Distal,intron-Proximal3.954684.10688K562KHSRP
chr6117888018117888114-CDS,intron-Distal4.334218.16229HepG2GRWD1
chr6117923273117923407-CDS,intron-Distal4.109813.07274HepG2SRSF9
chr6117891974117892037-CDS,intron-Distal,intron-Proximal4.193513.25089HepG2AQR
chr6117888127117888186-CDS,intron-Distal4.073874.09885HepG2BCLAF1
chr6117890786117890906-CDS,intron-Distal,intron-Proximal3.915933.28461K562BUD13
chr6117900113117900190-CDS,intron-Distal3.848814.51739HepG2BCLAF1
chr6117890848117890942-CDS,intron-Distal,intron-Proximal3.729085.83621K562AQR
chr6117891979117892051-CDS,intron-Distal,intron-Proximal5.025964.35676HepG2PRPF8
chr6117923262117923308-CDS,intron-Distal3.308284.18161HepG2RBM15
chr6117898442117898524-intron-Distal,intron-Proximal3.262784.39362HepG2KHSRP
chr6117897239117897300-intron-Distal3.119493.31157HepG2KHSRP
chr6117903370117903442-intron-Distal4.475923.72755K562EIF4G2
chr6117912849117912943-intron-Distal3.746324.48652HepG2PTBP1
chr6117912678117912776-intron-Distal3.274003.76460HepG2HNRNPL
chr6117898505117898587-intron-Distal,intron-Proximal4.692117.00634K562KHSRP
chr6117896573117896626-intron-Distal,intron-Proximal3.917293.48768HepG2KHSRP
chr6117887910117887964-intron-Distal,intron-Proximal3.234653.47285K562PRPF8
chr6117898742117898794-intron-Distal3.866485.30252HepG2KHSRP
chr6117918698117918771-intron-Distal4.887305.31233HepG2HLTF
chr6117901102117901297-intron-Distal4.233884.40847HepG2PTBP1
chr6117885379117885451-intron-Distal4.063448.51163HepG2AQR
chr6117891967117891999-intron-Distal,intron-Proximal4.416117.92018K562AQR
chr6117898673117898737-intron-Distal,intron-Proximal4.416833.79000HepG2U2AF2
chr6117897292117897393-intron-Distal4.292264.79477K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GOPC is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GOPC is not available on ENCORE database.

  • 90 RBPs can affect the levels of GOPC.  








The Knockdown/knockout RNA-Seq assay for GOPC is not available on ENCORE database.





90 RBPs can affect the gene expression of GOPC :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GOPCENSG00000047932.91303.164401739.72930-0.416807.428006.53060HepG2ACO1
GOPCENSG00000047932.91504.602901747.94220-0.216302.182301.49200HepG2AKAP8L
GOPCENSG00000047932.92507.812301930.788400.377103.471302.62110HepG2CALR
GOPCENSG00000047932.91061.566701545.76620-0.542108.774206.99210HepG2YBX3
GOPCENSG00000047932.91872.208901434.927700.383704.071402.95120HepG2DDX24
GOPCENSG00000047932.91445.941902073.27970-0.519904.256503.50300HepG2DDX6
GOPCENSG00000047932.91237.246001517.86730-0.294903.140102.39520HepG2DNAJC21
GOPCENSG00000047932.91008.562901504.40490-0.5769013.5012012.16980HepG2DNAJC2
GOPCENSG00000047932.91806.071601350.298000.419502.677601.59120HepG2AGO1
GOPCENSG00000047932.91714.686501384.761000.308202.790901.70460HepG2EIF3G
GOPCENSG00000047932.91715.648902222.34140-0.373302.879002.17250HepG2FXR1
GOPCENSG00000047932.91641.313402061.58640-0.328902.135801.54830HepG2G3BP1
GOPCENSG00000047932.91298.864001756.25270-0.435306.919905.85500HepG2HNRNPF
GOPCENSG00000047932.91822.796502187.54030-0.263202.418101.78380HepG2HNRNPL
GOPCENSG00000047932.91658.421902370.56620-0.515405.313104.47160HepG2HNRNPLL
GOPCENSG00000047932.91269.205601729.41360-0.446405.282504.31480HepG2IGF2BP1
GOPCENSG00000047932.91568.741002095.57130-0.417703.506802.75560HepG2IGF2BP2
GOPCENSG00000047932.91192.755901729.58530-0.5361013.6699012.17480HepG2ILF2
GOPCENSG00000047932.91503.519502107.76080-0.487403.370002.24930HepG2KHSRP
GOPCENSG00000047932.91336.235301590.36000-0.251203.274802.16640HepG2KIF1C
GOPCENSG00000047932.91803.755702381.08330-0.400603.501802.64490HepG2NOL12
GOPCENSG00000047932.91940.516101676.035900.211302.179901.42000HepG2PARN
GOPCENSG00000047932.91401.865301772.03410-0.338105.185804.39060HepG2PUS1
GOPCENSG00000047932.92860.937902478.266100.207102.190701.71520HepG2RBM22
GOPCENSG00000047932.91387.192301891.82470-0.447604.669503.81320HepG2RPLP0
GOPCENSG00000047932.91601.146301239.526100.369202.765101.97870HepG2RRP9
GOPCENSG00000047932.91169.214501507.91090-0.367005.126004.29730HepG2SAFB2
GOPCENSG00000047932.91095.829201694.79840-0.629104.926403.61410HepG2SMNDC1
GOPCENSG00000047932.93837.598102610.812400.555603.148602.31320HepG2SNRNP70
GOPCENSG00000047932.93510.927802159.761500.7009021.8142020.75600HepG2SRSF1
GOPCENSG00000047932.91464.836901725.43950-0.236202.426501.77170HepG2SRSF7
GOPCENSG00000047932.93076.221602430.337200.339906.419705.69780HepG2SSB
GOPCENSG00000047932.92259.485801941.331400.218802.129301.62580HepG2TAF15
GOPCENSG00000047932.91874.692402310.32680-0.301402.336501.66310HepG2TARDBP
GOPCENSG00000047932.92271.045701750.886900.375203.176602.50600HepG2U2AF1
GOPCENSG00000047932.91736.923902074.65710-0.256302.996201.91170HepG2UTP18
GOPCENSG00000047932.91821.574101379.462600.401007.477406.46200HepG2ZC3H8
GOPCENSG00000047932.91779.719102219.88440-0.318806.016705.29150HepG2ZNF622
GOPCENSG00000047932.91319.47110997.623800.403303.648502.27500K562AARS
GOPCENSG00000047932.9541.247201610.63040-1.5733049.2161046.86200K562AGGF1
GOPCENSG00000047932.91078.075301769.68810-0.7150010.917908.62020K562AKAP8
GOPCENSG00000047932.9792.170501675.89670-1.0811018.3640016.38750K562AKAP8L
GOPCENSG00000047932.91113.565901758.34880-0.6590010.959608.98570K562ATP5C1
GOPCENSG00000047932.91072.149601299.30000-0.277202.876001.89770K562BCLAF1
GOPCENSG00000047932.91535.515601924.91250-0.326103.231201.94360K562CCDC124
GOPCENSG00000047932.91062.289001516.64690-0.513705.906804.76510K562CPSF6
GOPCENSG00000047932.9665.22480985.71250-0.567306.435304.72370K562CSTF2
GOPCENSG00000047932.9543.80310748.91150-0.461704.054402.76210K562DDX3X
GOPCENSG00000047932.93077.041502299.228900.420308.351507.30030K562DDX47
GOPCENSG00000047932.9544.90040759.27860-0.478605.074103.12400K562DDX6
GOPCENSG00000047932.91369.123001803.61810-0.397602.850901.96140K562DKC1
GOPCENSG00000047932.91299.583401842.72480-0.503803.203202.43830K562EIF2S2
GOPCENSG00000047932.9982.52230782.397800.328502.221801.48320K562EIF4A3
GOPCENSG00000047932.9567.51990704.56310-0.312102.388401.33820K562EIF4B
GOPCENSG00000047932.9496.30910682.93460-0.460503.704702.18070K562EWSR1
GOPCENSG00000047932.91088.980001862.97390-0.774608.398806.83170K562FIP1L1
GOPCENSG00000047932.9515.10710738.10810-0.519005.516802.80600K562FUBP3
GOPCENSG00000047932.91380.40140813.655700.7625015.2096013.90160K562FXR1
GOPCENSG00000047932.9762.885701174.73230-0.622807.631705.14140K562G3BP1
GOPCENSG00000047932.91140.83890865.668400.398102.246301.61840K562G3BP2
GOPCENSG00000047932.91158.249801448.04880-0.322202.527101.76550K562GPKOW
GOPCENSG00000047932.91719.706202455.94230-0.514102.757202.00270K562GRSF1
GOPCENSG00000047932.9887.906101786.91820-1.009006.191404.10540K562HNRNPA2B1
GOPCENSG00000047932.9869.419601091.81300-0.328602.437801.87330K562HNRNPC
GOPCENSG00000047932.9723.56350974.89690-0.430103.499502.20440K562HNRNPF
GOPCENSG00000047932.91837.239902525.94470-0.459303.459702.57160K562HSPD1
GOPCENSG00000047932.9759.446101228.37900-0.693706.378204.54490K562IGF2BP2
GOPCENSG00000047932.9985.937001778.67560-0.8512015.4059012.90960K562KIF1C
GOPCENSG00000047932.91648.401601291.358700.352103.332202.40310K562MAGOH
GOPCENSG00000047932.9994.909201702.52450-0.775009.516207.14030K562MAK16
GOPCENSG00000047932.91388.881201992.54770-0.520707.057605.48110K562MBNL1
GOPCENSG00000047932.9993.081501413.44700-0.509205.524204.25990K562METAP2
GOPCENSG00000047932.9759.640301396.62020-0.878608.911606.97150K562NAA15
GOPCENSG00000047932.91368.197201750.26100-0.355306.765605.66720K562NSUN2
GOPCENSG00000047932.9806.012101074.85060-0.415302.836901.39450K562NUSAP1
GOPCENSG00000047932.9734.136101563.67320-1.090807.010605.19990K562PABPN1
GOPCENSG00000047932.91483.316001124.955500.398902.801701.96500K562PCBP3
GOPCENSG00000047932.91151.42460862.864300.416104.299403.29700K562POLR2G
GOPCENSG00000047932.91338.213602114.69200-0.660106.162504.85610K562PPIG
GOPCENSG00000047932.9893.813501859.64870-1.057006.051503.59490K562PPP1R8
GOPCENSG00000047932.9650.69760978.89870-0.589205.764904.38670K562PSIP1
GOPCENSG00000047932.93963.862402956.322300.423005.229404.11020K562PUF60
GOPCENSG00000047932.9452.587201662.29580-1.8769034.1614032.21490K562PUS1
GOPCENSG00000047932.9723.311501619.43630-1.1628029.3798027.36560K562RBM15
GOPCENSG00000047932.9960.827601203.22660-0.324602.380001.60570K562RBM22
GOPCENSG00000047932.9407.61030822.00100-1.011904.635802.84130K562RBM25
GOPCENSG00000047932.91625.074501266.154900.360002.772101.67840K562NELFE
GOPCENSG00000047932.9691.478201430.37950-1.048605.219003.40120K562SF1
GOPCENSG00000047932.91424.929901726.99090-0.277403.125102.25910K562SF3A3
GOPCENSG00000047932.9920.927801642.14290-0.834403.947002.38540K562SNRNP200
GOPCENSG00000047932.9610.50310846.54640-0.471603.715502.47770K562SRFBP1
GOPCENSG00000047932.91519.741501769.33310-0.219402.604201.69130K562SRPK2
GOPCENSG00000047932.91749.733401229.890800.508506.644505.55740K562SRSF1
GOPCENSG00000047932.9825.628901161.43350-0.492304.644903.22020K562SRSF5
GOPCENSG00000047932.91069.299801311.72830-0.294802.892201.69450K562SRSF7
GOPCENSG00000047932.91263.49760865.496000.545706.968905.64900K562SYNCRIP
GOPCENSG00000047932.9814.703601178.07200-0.532105.184203.59340K562TRA2A
GOPCENSG00000047932.9719.051901000.13740-0.476004.242803.01480K562TRIM56
GOPCENSG00000047932.91357.290002179.87800-0.683506.230503.98750K562TRIP6
GOPCENSG00000047932.91427.071601848.32030-0.373205.563203.73790K562TROVE2
GOPCENSG00000047932.9584.94220840.08320-0.522202.620901.56110K562U2AF1
GOPCENSG00000047932.91320.671301855.83520-0.490809.730308.48540K562UPF1
GOPCENSG00000047932.9692.390001685.12550-1.283208.850906.23920K562UTP18
GOPCENSG00000047932.91904.318202594.63090-0.446305.215503.96920K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GOPC is not available on ENCORE database.





5 RBPs can affect the splicing of GOPC :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGOPCENSG00000047932.9chr6-1178986101178986341178963391178965151179000621179002270.069000.000410.03008includedHepG2RBM22
SEGOPCENSG00000047932.9chr6-1178986101178986341178963391178965151179000621179002270.121000.000000.00001includedHepG2U2AF1
SEGOPCENSG00000047932.9chr6-1178986101178986341178963391178965151179000621179002270.059000.000120.00230includedHepG2U2AF2
SEGOPCENSG00000047932.9chr6-117892022117892118117890734117890899117894629117894838-0.058000.007900.06733excludedK562AQR
SEGOPCENSG00000047932.9chr6-1178986101178986341178963391178965151179000621179002270.140000.000120.00806includedHepG2HNRNPU
MXEGOPCENSG00000047932.9chr6-1178907341178908991178920221178921181178880161178881971178946291178947340.100000.000000.000001includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GOPC is not avaliable on ENCORE database.