FARSA

General Information

Gene Name       : FARSA
Gene ID             : ENSG00000179115.10
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: FARSA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FARSAENSG00000179115.107.3646.2226.79ENCSR000AEF
HepG2FARSAENSG00000179115.1082.9936.0959.54ENCSR985KAT
K562FARSAENSG00000179115.10125.30125.01125.16ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FARSA is not avaliable on ENCORE database.



Proteins bound to RNA
  • FARSA RNA is bound by 21 proteins.  







eCLIP assay for FARSA is not avaliable on ENCORE database.





21 proteins are bound to FARSA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191303357313033625-3'-UTR,CDS,intron-Distal3.451194.68114K562DDX55
chr191303357413033640-3'-UTR,CDS,intron-Distal4.525695.50419HepG2LARP4
chr191303343313033494-3'-UTR,CDS,intron-Distal3.891543.60656K562NOLC1
chr191303332013033382-3'-UTR,intron-Distal,intron-Proximal4.517818.97449HepG2SUB1
chr191303339813033483-3'-UTR,CDS,intron-Distal4.292719.31157K562PCBP1
chr191303489813034970-3'-UTR,CDS,intron-Distal,intron-Proximal4.638509.46915K562AQR
chr191303554213035599-3'-UTR,CDS,intron-Distal3.9804316.68962K562YBX3
chr191303341113033482-3'-UTR,CDS,intron-Distal5.0113920.64401K562PABPC4
chr191303363313033660-3'-UTR,CDS,intron-Distal3.444495.82813K562PABPC4
chr191303340413033486-3'-UTR,CDS,intron-Distal5.4781216.15053HepG2SUB1
chr191303348213033563-3'-UTR,intron-Distal3.8527510.27880K562PABPC4
chr191303497113035036-3'-UTR,CDS,intron-Distal5.5095110.24994K562RPS3
chr191303332413033384-3'-UTR,intron-Distal,intron-Proximal5.2066770.66404K562PABPC4
chr191303496113034995-3'-UTR,CDS,intron-Distal,intron-Proximal3.126855.31654HepG2PPIG
chr191303332513033373-3'-UTR,intron-Distal,intron-Proximal3.114683.96118HepG2LARP4
chr191303348813033541-3'-UTR,intron-Distal4.372004.17937HepG2PCBP2
chr191303343013033514-3'-UTR,CDS,intron-Distal4.3163117.32307K562PUM2
chr191303499513035025-3'-UTR,CDS,intron-Distal3.136514.16939HepG2PPIG
chr191303911813039170-5'-UTR,CDS,intron-Distal,intron-Proximal4.605797.13970HepG2PRPF8
chr191304441413044489-CDS,intron-Distal,intron-Proximal3.838737.62714HepG2SUB1
chr191303960813039662-CDS,intron-Distal,intron-Proximal3.7165411.77700HepG2PPIG
chr191304103613041119-CDS,intron-Distal,intron-Proximal5.1542816.61371K562DDX24
chr191303959613039659-CDS,intron-Distal4.607738.51520K562DDX24
chr191304147713041526-CDS,intron-Distal3.834646.13978HepG2PPIG
chr191304103513041055-CDS,intron-Distal,intron-Proximal4.4930810.43162HepG2PPIG
chr191304142613041460-CDS,intron-Distal,intron-Proximal5.922498.17127K562RPS3
chr191303926413039315-CDS,intron-Distal,intron-Proximal3.744455.82046K562SF3B4
chr191304445613044503-CDS,intron-Distal,intron-Proximal3.034623.60157HepG2GRWD1
chr191303960813039661-CDS,intron-Distal3.696867.39309HepG2G3BP1
chr191304148513041544-CDS,intron-Distal3.285014.41784HepG2GRWD1
chr191304143313041477-CDS,intron-Distal,intron-Proximal3.175467.38586HepG2PPIG
chr191304103513041142-CDS,intron-Distal,intron-Proximal3.9031512.81756K562UCHL5
chr191304103513041148-CDS,intron-Distal,intron-Proximal3.5550912.22955HepG2G3BP1
chr191303947213039533-CDS,intron-Distal,intron-Proximal3.186135.93037K562EFTUD2
chr191304433613044371-CDS,intron-Distal,intron-Proximal4.123635.63763K562AQR
chr191303929713039357-CDS,intron-Distal,intron-Proximal3.062246.75122HepG2PRPF8
chr191303939613039446-CDS,intron-Distal3.406787.65255K562YBX3
chr191304437913044452-CDS,intron-Distal3.232863.17744HepG2GRWD1
chr191304140113041459-CDS,intron-Distal,intron-Proximal4.6574710.42975HepG2PRPF8
chr191304144713041487-CDS,intron-Distal4.578285.79396K562DDX24
chr191304103213041057-CDS,intron-Distal,intron-Proximal4.118505.01214HepG2BUD13
chr191304099813041076-CDS,intron-Distal,intron-Proximal4.061995.56912HepG2AQR
chr191304431713044336-intron-Distal,intron-Proximal4.162636.01372K562AQR
chr191303522213035263-intron-Distal,intron-Proximal4.077075.63763K562AQR
chr191303535313035389-intron-Distal,intron-Proximal5.227076.03057K562EFTUD2
chr191304099413041032-intron-Distal,intron-Proximal5.054255.35117HepG2PRPF8
chr191304134213041389-intron-Distal,intron-Proximal5.761548.45613K562EFTUD2
chr191303735013037380-intron-Distal6.9934872.18599HepG2DKC1
chr191303911613039155-intron-Distal,intron-Proximal4.580594.96013K562PRPF8
chr191303738013037394-intron-Distal6.5604986.89733HepG2DKC1
chr191304099413041022-intron-Distal,intron-Proximal4.253896.48405K562AQR
chr191303929913039331-intron-Distal,intron-Proximal3.059404.56061K562BUD13
chr191303743013037439-intron-Distal6.5842630.45311HepG2DKC1
chr191303739413037409-intron-Distal6.5954849.87035HepG2DKC1
chr191304432813044364-intron-Distal,intron-Proximal4.800775.68502HepG2PRPF8
chr191303521913035263-intron-Distal,intron-Proximal5.8649914.36626HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FARSA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FARSA is not available on ENCORE database.

  • 94 RBPs can affect the levels of FARSA.  








The Knockdown/knockout RNA-Seq assay for FARSA is not available on ENCORE database.





94 RBPs can affect the gene expression of FARSA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FARSAENSG00000179115.6709.18830960.02400-0.436902.423501.69770HepG2CALR
FARSAENSG00000179115.6834.07650514.339800.697404.128703.18740HepG2CNOT7
FARSAENSG00000179115.6920.679601273.42780-0.467904.033003.21690HepG2CPSF6
FARSAENSG00000179115.61564.216801256.298500.316202.496601.44700HepG2CPSF7
FARSAENSG00000179115.6926.67250555.944400.737005.968704.47550HepG2YBX3
FARSAENSG00000179115.61386.51640976.848200.505207.618006.64980HepG2CELF1
FARSAENSG00000179115.6819.76690556.692800.558204.687003.20140HepG2DDX1
FARSAENSG00000179115.6831.787301061.32140-0.351603.755302.98970HepG2DKC1
FARSAENSG00000179115.6914.73220545.857100.744705.944204.94500HepG2DNAJC21
FARSAENSG00000179115.6909.52310541.093100.7491015.1279013.72540HepG2DNAJC2
FARSAENSG00000179115.6730.493701036.24010-0.504406.530805.34230HepG2EIF4G1
FARSAENSG00000179115.61293.764201672.64220-0.370605.524204.72380HepG2ETF1
FARSAENSG00000179115.6627.85540435.351700.528202.873401.47360HepG2HNRNPA0
FARSAENSG00000179115.61095.07780608.947100.8465018.6559017.19100HepG2HNRNPU
FARSAENSG00000179115.6974.44300622.016100.6475012.9337011.47900HepG2ILF2
FARSAENSG00000179115.61890.676001307.726100.531703.741603.01770HepG2MATR3
FARSAENSG00000179115.61029.068101246.68070-0.276802.115201.40290HepG2MSI2
FARSAENSG00000179115.6932.188901405.04370-0.591903.655102.53030HepG2MTPAP
FARSAENSG00000179115.6918.281901221.49160-0.411603.294802.47870HepG2NSUN2
FARSAENSG00000179115.6774.62700602.730000.361903.339202.41660HepG2PARN
FARSAENSG00000179115.6808.87070543.128900.574502.116801.46520HepG2PPIL4
FARSAENSG00000179115.61395.616701055.427100.403005.443004.66900HepG2PUM1
FARSAENSG00000179115.6948.570601445.57010-0.607809.399908.34800HepG2QKI
FARSAENSG00000179115.6880.885101398.00710-0.6663011.5341010.62940HepG2RBM22
FARSAENSG00000179115.61021.511301311.93840-0.361003.239802.51600HepG2RBM25
FARSAENSG00000179115.6909.36270582.814600.641702.493701.48810HepG2RCC2
FARSAENSG00000179115.61122.193601485.43570-0.404605.581104.85510HepG2NELFE
FARSAENSG00000179115.61021.925101383.46390-0.437006.327305.44860HepG2RECQL
FARSAENSG00000179115.6838.43370659.785900.345602.495901.90960HepG2RPS19
FARSAENSG00000179115.6885.74820542.283300.7077012.4391011.22090HepG2SAFB2
FARSAENSG00000179115.61082.474101389.64680-0.360404.503703.77680HepG2SF3B4
FARSAENSG00000179115.61240.72530953.307400.380105.417504.49130HepG2SLBP
FARSAENSG00000179115.61079.97250632.375500.7720017.6078016.19750HepG2SMN1
FARSAENSG00000179115.6943.74680620.693100.604402.150101.31690HepG2SMNDC1
FARSAENSG00000179115.61400.328201578.97580-0.173201.754701.32780HepG2SRFBP1
FARSAENSG00000179115.61067.317401450.48190-0.442506.827506.16550HepG2SRSF1
FARSAENSG00000179115.61280.09320981.662100.382904.177503.43640HepG2SRSF5
FARSAENSG00000179115.6790.867901180.03690-0.5773010.206909.26330HepG2SRSF9
FARSAENSG00000179115.61080.057401370.88680-0.344004.586403.95970HepG2SSB
FARSAENSG00000179115.61685.992201116.430400.5946013.6316012.42280HepG2SUCLG1
FARSAENSG00000179115.6571.622901303.72600-1.1895030.9128029.30800HepG2TAF15
FARSAENSG00000179115.6858.740101197.97170-0.480305.455504.29390HepG2TIA1
FARSAENSG00000179115.61227.97990596.999801.0404028.4596026.88980HepG2TRIM56
FARSAENSG00000179115.61418.01940971.320900.545806.672505.22740HepG2TUFM
FARSAENSG00000179115.6691.45340451.176700.615802.175001.50160HepG2UCHL5
FARSAENSG00000179115.6971.882901350.28980-0.474407.848906.77030HepG2UPF1
FARSAENSG00000179115.61578.290101303.653700.275703.304302.66040HepG2UTP3
FARSAENSG00000179115.6664.98120462.998700.522202.927001.79300HepG2XPO5
FARSAENSG00000179115.63312.140704104.46930-0.309402.776401.55270K562ABCF1
FARSAENSG00000179115.62842.979202530.442800.167901.786601.31000K562AGGF1
FARSAENSG00000179115.62224.000901718.014900.372305.347603.18270K562AKAP1
FARSAENSG00000179115.63107.615002633.029600.239001.854701.31520K562AKAP8L
FARSAENSG00000179115.61894.912703644.27930-0.9435018.6792017.32250K562AQR
FARSAENSG00000179115.63443.777902762.661400.317804.359503.18470K562ATP5C1
FARSAENSG00000179115.61821.882702506.99810-0.460504.682403.53650K562BOP1
FARSAENSG00000179115.61964.630702665.56780-0.440205.835604.70310K562CPSF6
FARSAENSG00000179115.62480.348901921.084100.368505.857403.93460K562DDX27
FARSAENSG00000179115.67302.773404537.548100.6864025.8823024.08170K562DDX47
FARSAENSG00000179115.63479.452902582.906600.429804.285002.57350K562DHX30
FARSAENSG00000179115.63422.487202833.396400.272403.549302.54020K562DKC1
FARSAENSG00000179115.62737.262003703.78200-0.436308.459307.30360K562EIF2S2
FARSAENSG00000179115.63948.344402346.615000.750606.023404.50750K562EIF3A
FARSAENSG00000179115.61756.48760765.033301.1990035.0103032.24980K562EIF3G
FARSAENSG00000179115.64117.624704706.64560-0.192902.253201.40290K562EIF4G2
FARSAENSG00000179115.61896.762102452.61320-0.370802.678801.57350K562FKBP4
FARSAENSG00000179115.61568.467402712.32710-0.7902013.1381011.21290K562FMR1
FARSAENSG00000179115.61629.283902299.01790-0.496804.831703.58960K562FTO
FARSAENSG00000179115.62852.977101891.156300.5931013.4700012.23740K562FXR1
FARSAENSG00000179115.681.82830519.11340-2.6654016.0511014.00120K562G3BP2
FARSAENSG00000179115.61855.698002822.95210-0.6052010.034508.95490K562HNRNPC
FARSAENSG00000179115.63165.701102426.494000.383602.958101.99340K562HNRNPM
FARSAENSG00000179115.64533.777803812.401000.249902.135901.35250K562HNRNPU
FARSAENSG00000179115.61777.699401136.135600.645802.991201.91130K562IGF2BP2
FARSAENSG00000179115.62537.463104015.33370-0.662104.117802.36550K562ILF2
FARSAENSG00000179115.61167.314802173.20740-0.896608.853407.06860K562KRR1
FARSAENSG00000179115.61678.284701193.211100.492004.638803.54460K562MAGOH
FARSAENSG00000179115.61709.042001190.665400.521304.193403.03870K562MATR3
FARSAENSG00000179115.63460.552104085.12330-0.239403.819302.88230K562MTPAP
FARSAENSG00000179115.64063.956303348.932700.279102.159601.43910K562PPIG
FARSAENSG00000179115.62291.597401159.340800.9829023.7246021.86100K562PTBP1
FARSAENSG00000179115.64268.014405462.48680-0.356005.260203.75240K562PUM1
FARSAENSG00000179115.64389.854505351.81500-0.285904.408203.19150K562PUM2
FARSAENSG00000179115.61465.078501111.220000.398702.193601.44890K562RBM22
FARSAENSG00000179115.61472.773001083.571500.442603.725902.03230K562RBM34
FARSAENSG00000179115.61732.192301169.486400.566605.384103.79220K562NELFE
FARSAENSG00000179115.62017.874701145.884900.816302.974601.93400K562RPS3
FARSAENSG00000179115.64258.744102827.854100.590605.047603.58500K562SAFB
FARSAENSG00000179115.63837.491504478.72040-0.222902.263501.51980K562SF3A3
FARSAENSG00000179115.61490.062302420.54320-0.700007.916206.21930K562SF3B1
FARSAENSG00000179115.6826.20650539.370600.615104.585303.47410K562SF3B4
FARSAENSG00000179115.6441.28570702.49610-0.670803.505201.67450K562SND1
FARSAENSG00000179115.61655.671102782.57270-0.749003.183801.82970K562SNRNP200
FARSAENSG00000179115.63429.877504588.53130-0.4199012.6279010.82080K562SRPK2
FARSAENSG00000179115.62255.745301136.632900.9887019.1878017.33950K562SRSF1
FARSAENSG00000179115.61620.774101106.115700.551105.300303.75690K562SRSF4
FARSAENSG00000179115.61620.852401073.692700.594103.171602.03360K562SRSF5
FARSAENSG00000179115.6568.03090789.14140-0.474304.806503.04910K562SSB
FARSAENSG00000179115.62991.845103871.05170-0.371703.643802.06440K562SSRP1
FARSAENSG00000179115.61719.226003415.06400-0.990203.750901.47570K562SUGP2
FARSAENSG00000179115.61807.283603329.23730-0.881404.477802.50070K562SUPT6H
FARSAENSG00000179115.6208.83050509.53620-1.286904.780702.65550K562TAF15
FARSAENSG00000179115.61646.635501150.147600.517601.926301.32930K562TARDBP
FARSAENSG00000179115.61659.121201109.499600.580406.312505.00140K562TIA1
FARSAENSG00000179115.61778.752101089.220200.707507.029805.08890K562TRA2A
FARSAENSG00000179115.63273.152902587.121700.339203.335902.27800K562TRIM56
FARSAENSG00000179115.6218.99150519.35520-1.2458011.7760010.10470K562U2AF2
FARSAENSG00000179115.63346.020704812.83880-0.5244016.4032014.82180K562UPF1
FARSAENSG00000179115.63185.491404118.20810-0.370504.585003.44340K562WDR3
FARSAENSG00000179115.63482.026804317.18690-0.310203.349301.92020K562WRN
FARSAENSG00000179115.61867.948303275.55550-0.810303.874401.86280K562YTHDC2
FARSAENSG00000179115.63074.297404105.70310-0.417405.024303.80670K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FARSA is not available on ENCORE database.





2 RBPs can affect the splicing of FARSA :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSFARSAENSG00000179115.6chr19-1303956813039746130395681303966113041036130411550.100000.000000.00000longerK562AQR
RIFARSAENSG00000179115.6chr19-1303545213035817130354521303562113035717130358170.096000.000000.00000includedK562AQR
RIFARSAENSG00000179115.6chr19-1303922313039411130392231303927113039348130394110.051000.000000.00000includedK562AQR
MXEFARSAENSG00000179115.6chr19-13035262130353401303545213035817130349641303507913035903130359880.096000.004620.070771includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FARSA is not avaliable on ENCORE database.