FAM104A

General Information

Gene Name       : FAM104A
Gene ID             : ENSG00000133193.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM104A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FAM104AENSG00000133193.1221.3820.1420.76ENCSR000AEF
HepG2FAM104AENSG00000133193.1225.0920.0322.56ENCSR985KAT
K562FAM104AENSG00000133193.1218.9315.8217.38ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM104A is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM104A RNA is bound by 15 proteins.  







eCLIP assay for FAM104A is not avaliable on ENCORE database.





15 proteins are bound to FAM104A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr177120440271204449-3'-UTR,intron-Distal3.553914.24288K562UPF1
chr177120559571205657-3'-UTR,intron-Distal,intron-Proximal4.055643.73331K562RBM15
chr177120569971205912-3'-UTR,CDS,intron-Distal,intron-Proximal3.366329.58775HepG2GRWD1
chr177120370471203799-3'-UTR,intron-Distal3.249776.15304K562YBX3
chr177120581171205917-3'-UTR,CDS,intron-Distal3.773295.78807K562BUD13
chr177120437571204548-3'-UTR,intron-Distal3.032446.22293HepG2UPF1
chr177122329971223375-5'-UTR,CDS,intron-Distal,intron-Proximal3.335675.35144K562ZNF622
chr177122336471223427-5'-UTR,CDS,intron-Distal,intron-Proximal4.489358.58031HepG2U2AF2
chr177122817271228237-CDS,intron-Distal4.403998.44604HepG2PRPF8
chr177120583071205920-CDS,intron-Distal4.107754.14779K562U2AF2
chr177122015171220219-intron-Distal5.9753213.20639HepG2PCBP2
chr177122808771228168-intron-Distal3.099643.00054HepG2PRPF4
chr177122321771223301-intron-Distal,intron-Proximal4.358369.94910K562KHSRP
chr177121267371212762-intron-Distal5.809538.93487K562PTBP1
chr177121259571212673-intron-Distal4.295239.23478K562PTBP1
chr177122055171220666-intron-Distal4.5628310.81726HepG2QKI
chr177122315771223217-intron-Distal,intron-Proximal3.896566.59336K562KHSRP
chr177122007371220151-intron-Distal4.864129.67229HepG2PCBP2
chr177120949171209555-intron-Distal3.578403.02234K562KHSRP
chr177121259471212663-intron-Distal3.425517.55590HepG2PCBP2
chr177121233071212394-intron-Distal3.359753.98203K562MATR3
chr177122287871222914-intron-Distal3.723513.24603K562KHSRP
chr177122093771221125-intron-Distal3.410954.07434HepG2SND1
chr177122008171220166-intron-Distal4.243306.11515K562PTBP1
chr177121259671212771-intron-Distal6.3372016.12958HepG2PTBP1
chr177122311771223203-intron-Distal3.360295.14345HepG2KHSRP
chr177122345371223515-intron-Distal,intron-Proximal4.765548.06346K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM104A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM104A is not available on ENCORE database.

  • 72 RBPs can affect the levels of FAM104A.  








The Knockdown/knockout RNA-Seq assay for FAM104A is not available on ENCORE database.





72 RBPs can affect the gene expression of FAM104A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM104AENSG00000133193.8866.17340733.697600.239401.974001.44430HepG2ACO1
FAM104AENSG00000133193.8455.37990651.61510-0.516903.766102.62520HepG2ADAR
FAM104AENSG00000133193.81417.737801100.836500.364904.699003.84520HepG2AUH
FAM104AENSG00000133193.8585.64910999.39070-0.771008.887707.71690HepG2CPSF6
FAM104AENSG00000133193.8907.773301064.14820-0.229302.193401.52190HepG2DAZAP1
FAM104AENSG00000133193.8427.65620588.35140-0.460203.176302.45290HepG2DDX21
FAM104AENSG00000133193.81072.38080764.106300.488903.348202.67580HepG2DDX6
FAM104AENSG00000133193.8517.26980701.97840-0.440502.807102.12520HepG2DKC1
FAM104AENSG00000133193.8364.48070736.51280-1.0149011.431609.73050HepG2EEF2
FAM104AENSG00000133193.8461.99430734.47700-0.668805.452204.63670HepG2EIF2S1
FAM104AENSG00000133193.8829.93700597.864600.473103.307802.32570HepG2EIF3D
FAM104AENSG00000133193.8370.96650555.63860-0.582904.933603.54010HepG2EIF3G
FAM104AENSG00000133193.8527.00180811.64630-0.623004.752003.91720HepG2EIF4A3
FAM104AENSG00000133193.8415.15190717.05170-0.788409.329007.81870HepG2EWSR1
FAM104AENSG00000133193.8385.66830532.31530-0.464902.821101.91390HepG2GEMIN5
FAM104AENSG00000133193.8818.278301132.86560-0.469303.349702.64950HepG2GPKOW
FAM104AENSG00000133193.8876.76010700.538200.323603.210202.16020HepG2HDGF
FAM104AENSG00000133193.8486.41400736.83650-0.599205.160104.23540HepG2HNRNPC
FAM104AENSG00000133193.8783.027601009.71430-0.366803.279302.50300HepG2HNRNPF
FAM104AENSG00000133193.8760.976501081.11650-0.506604.167703.41030HepG2HNRNPLL
FAM104AENSG00000133193.8700.30760994.29200-0.505703.753502.92070HepG2IGF2BP1
FAM104AENSG00000133193.8611.68490747.68050-0.289602.596101.88410HepG2ILF2
FAM104AENSG00000133193.81148.953801540.55420-0.423102.640201.82930HepG2LARP4
FAM104AENSG00000133193.81331.85550823.883400.692804.383603.60610HepG2MATR3
FAM104AENSG00000133193.8890.59130606.276000.554702.583401.53070HepG2NONO
FAM104AENSG00000133193.8352.66170750.92350-1.0904012.8832011.35750HepG2PABPC4
FAM104AENSG00000133193.8393.27120719.29240-0.8711013.7634012.23800HepG2PRPF4
FAM104AENSG00000133193.8773.447501007.27460-0.381102.939302.32790HepG2PUF60
FAM104AENSG00000133193.8708.102001068.48050-0.593507.535806.45310HepG2PUM2
FAM104AENSG00000133193.8891.62640645.047200.466901.957501.35450HepG2RAVER1
FAM104AENSG00000133193.81468.168801165.957800.332403.295702.36810HepG2RBM15
FAM104AENSG00000133193.8906.14100738.450200.295101.982701.40460HepG2RBM25
FAM104AENSG00000133193.8827.73030651.853900.344503.493302.78480HepG2SAFB2
FAM104AENSG00000133193.81413.90950910.901500.634203.760602.96960HepG2SF3A3
FAM104AENSG00000133193.8691.384101070.07930-0.630206.719105.66110HepG2SF3B1
FAM104AENSG00000133193.8608.01030965.79280-0.6676012.0400010.75260HepG2SLBP
FAM104AENSG00000133193.8885.58740657.940600.428602.291301.42900HepG2SMNDC1
FAM104AENSG00000133193.8919.996301193.16370-0.375104.790704.18300HepG2SRFBP1
FAM104AENSG00000133193.81254.42000994.521500.334803.770803.06120HepG2SRSF5
FAM104AENSG00000133193.8776.14260991.97040-0.354003.341602.58660HepG2SRSF7
FAM104AENSG00000133193.8918.60750664.211100.467706.103205.33950HepG2SRSF9
FAM104AENSG00000133193.8699.388101035.93570-0.566808.875808.05840HepG2SSB
FAM104AENSG00000133193.8842.48220602.824100.482802.503801.36180HepG2SUB1
FAM104AENSG00000133193.8791.159801131.05810-0.515608.576007.58200HepG2SUCLG1
FAM104AENSG00000133193.8907.90640717.597000.339303.464002.84840HepG2TRIM56
FAM104AENSG00000133193.81301.64740870.195300.580805.748404.86020HepG2U2AF1
FAM104AENSG00000133193.8666.358801041.58080-0.644405.499504.29390HepG2UBE2L3
FAM104AENSG00000133193.8955.16710807.832900.241602.062001.44380HepG2UPF1
FAM104AENSG00000133193.81101.74340779.927100.498307.110406.22570HepG2UTP3
FAM104AENSG00000133193.81308.82820888.458000.5588011.2329010.31360HepG2ZNF622
FAM104AENSG00000133193.8789.16420575.181500.456203.646502.27350K562AARS
FAM104AENSG00000133193.81393.567501141.244100.288101.912401.40750K562AQR
FAM104AENSG00000133193.81078.03880743.444300.536004.702803.55470K562BOP1
FAM104AENSG00000133193.8890.14150630.712400.497004.275702.66960K562CIRBP
FAM104AENSG00000133193.81575.950001278.822800.301303.664602.92820K562DDX47
FAM104AENSG00000133193.8925.34820532.361900.797507.627205.76480K562EIF3D
FAM104AENSG00000133193.81613.698101381.692600.223802.483901.59000K562EIF4G2
FAM104AENSG00000133193.8781.90980532.815300.553306.218605.36560K562FXR1
FAM104AENSG00000133193.8636.18890450.728700.497102.738502.03640K562G3BP2
FAM104AENSG00000133193.8995.640801268.99170-0.350002.691601.90690K562HSPD1
FAM104AENSG00000133193.81856.972001472.807800.334303.211601.99080K562MSI2
FAM104AENSG00000133193.81182.17770846.953600.481003.668702.70820K562PCBP3
FAM104AENSG00000133193.8975.25650649.631900.586106.800405.55430K562POLR2G
FAM104AENSG00000133193.8719.34160483.792000.572204.524603.56620K562PRPF8
FAM104AENSG00000133193.8933.07860600.863700.634907.849106.77030K562PTBP1
FAM104AENSG00000133193.81376.00270929.974400.565105.553504.81560K562PUS1
FAM104AENSG00000133193.81087.19570906.080200.262802.035801.51290K562RBM15
FAM104AENSG00000133193.8707.04720492.836300.520603.534802.60860K562RPS19
FAM104AENSG00000133193.8570.71340414.800200.460202.486801.54380K562RPS3
FAM104AENSG00000133193.8699.96500494.700400.500602.777401.44850K562RRP9
FAM104AENSG00000133193.81196.78680969.736500.303402.950802.11110K562SF3A3
FAM104AENSG00000133193.8861.78690589.026000.548905.553404.55760K562SRSF1
FAM104AENSG00000133193.81023.114801315.40350-0.362502.947301.39340K562SUCLG1
FAM104AENSG00000133193.8760.50200468.486200.698805.985204.44630K562SUPV3L1
FAM104AENSG00000133193.81350.142601102.681100.292003.085801.74190K562TROVE2
FAM104AENSG00000133193.8696.62020495.799500.490503.542802.38060K562UCHL5
FAM104AENSG00000133193.81233.175401042.044200.242902.311901.65140K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM104A is not available on ENCORE database.





9 RBPs can affect the splicing of FAM104A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFAM104AENSG00000133193.8chr17-7122330371223403712034917120590771228224712285100.106000.000190.05477includedK562PUM1
SEFAM104AENSG00000133193.8chr17-712088167120887971203491712059077122330371223403-0.141000.009890.09050excludedHepG2U2AF2
SEFAM104AENSG00000133193.8chr17-712088167120887971203491712059077122330371223403-0.236000.000060.00645excludedHepG2AKAP1
SEFAM104AENSG00000133193.8chr17-712233037122340371203491712059077122822471228510-0.174000.000020.00046excludedK562AQR
SEFAM104AENSG00000133193.8chr17-712088167120887971203491712059077122330371223403-0.120000.000000.00002excludedK562PUS1
SEFAM104AENSG00000133193.8chr17-712088167120887971203491712059077122330371223403-0.182000.000360.02297excludedHepG2PTBP1
SEFAM104AENSG00000133193.8chr17-712088167120887971203491712059077122330371223403-0.201000.000320.03269excludedHepG2DDX6
SEFAM104AENSG00000133193.8chr17-7120881671208879712034917120590771223303712234030.333000.000190.01095includedK562SF3B1
SEFAM104AENSG00000133193.8chr17-712233037122340371203491712059077122822471228510-0.150000.000080.01796excludedK562ZC3H8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FAM104A is not avaliable on ENCORE database.