EFHD2

General Information

Gene Name       : EFHD2
Gene ID             : ENSG00000142634.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: EFHD2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878EFHD2ENSG00000142634.125.5021.2713.38ENCSR000AEF
HepG2EFHD2ENSG00000142634.1217.036.4311.73ENCSR985KAT
K562EFHD2ENSG00000142634.1229.3717.5723.47ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for EFHD2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • EFHD2 RNA is bound by 9 proteins.  







eCLIP assay for EFHD2 is not avaliable on ENCORE database.





9 proteins are bound to EFHD2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11575554115755596+3'-UTR4.8460619.83932HepG2AKAP1
chr11575671815756785+3'-UTR5.5858711.50340HepG2PCBP2
chr11575614215756196+3'-UTR4.6260611.88181HepG2AKAP1
chr11575622415756291+3'-UTR6.4227016.57367K562AKAP1
chr11575580115755858+3'-UTR6.0496529.43013K562UPF1
chr11575552015755658+3'-UTR6.0741038.95905K562AKAP1
chr11575548715755546+3'-UTR5.5565620.44698K562UPF1
chr11575621615756269+3'-UTR4.4785411.06991HepG2AKAP1
chr11575591115755968+3'-UTR5.3804611.88808K562LIN28B
chr11575579215755889+3'-UTR4.7170419.21704HepG2UPF1
chr11575546715755558+3'-UTR6.3756040.75502HepG2UPF1
chr11575614815756200+3'-UTR5.2935825.68079K562UPF1
chr11575579315755867+3'-UTR5.1283218.26928HepG2AKAP1
chr11575546115755541+3'-UTR6.5402023.81808HepG2AKAP1
chr11575557015755669+3'-UTR5.8354636.65816K562UPF1
chr11575628615756321+3'-UTR3.183844.63794HepG2AKAP1
chr11575587515755904+3'-UTR5.8831513.23699K562UPF1
chr11575615115756198+3'-UTR4.9736410.44499K562AKAP1
chr11575652415756570+3'-UTR3.084394.31933K562FAM120A
chr11575547315755654+3'-UTR4.041053.31570HepG2HNRNPK
chr11575582315755870+3'-UTR5.8613110.17460K562AKAP1
chr11575622915756272+3'-UTR4.7236814.74404K562UPF1
chr11575546915755520+3'-UTR3.6456410.95829K562AKAP1
chr11575652715756567+3'-UTR4.8661318.64197K562UPF1
chr11575621615756256+3'-UTR3.212043.29111K562FAM120A
chr11575558915755660+3'-UTR5.8217925.79596HepG2UPF1
chr11575593415755991+3'-UTR5.6933424.56835K562UPF1
chr11575658815756640+3'-UTR5.1932422.61695K562UPF1
chr11575553815755685+3'-UTR4.372353.62737K562HNRNPK
chr11575609415756115+3'-UTR4.8510912.17194K562UPF1
chr11575574515755801+3'-UTR6.7668424.66325K562UPF1
chr11575558615755666+3'-UTR4.358005.13929K562PCBP1
chr11575615015756197+3'-UTR5.6070311.27805HepG2UPF1
chr11575635315756434+3'-UTR5.7389837.09005K562UPF1
chr11575559615755667+3'-UTR4.7551515.65985HepG2AKAP1
chr11573640615736560+5'-UTR,CDS4.132157.37356K562DDX3X
chr11575366315753681+CDS4.5447710.31351K562LIN28B
chr11573649815736579+CDS5.9685416.62098HepG2UPF1
chr11575368115753714+CDS4.0857511.36582K562LIN28B
chr11575513615755170+CDS4.4278413.57997K562UPF1
chr11573647915736598+CDS4.223804.39367K562PUM1
chr11573648715736595+CDS3.6350614.44732K562AKAP1
chr11575236715752411+CDS4.221174.96063K562LIN28B
chr11575365215753663+CDS3.734975.15600K562LIN28B
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for EFHD2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for EFHD2 is not available on ENCORE database.

  • 102 RBPs can affect the levels of EFHD2.  








The Knockdown/knockout RNA-Seq assay for EFHD2 is not available on ENCORE database.





102 RBPs can affect the gene expression of EFHD2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
EFHD2ENSG00000142634.8554.45590434.961500.350102.749302.14370HepG2ACO1
EFHD2ENSG00000142634.8173.60260329.13440-0.922903.942103.01130HepG2ASCC1
EFHD2ENSG00000142634.8445.37090278.614500.676603.210402.20050HepG2BCCIP
EFHD2ENSG00000142634.8253.21250508.58510-1.006109.124108.11490HepG2BOP1
EFHD2ENSG00000142634.8295.43610466.89270-0.660204.689603.81580HepG2CPSF6
EFHD2ENSG00000142634.8583.07210423.059900.462703.002501.85480HepG2CPSF7
EFHD2ENSG00000142634.8257.18550168.624900.608903.414302.28380HepG2YBX3
EFHD2ENSG00000142634.8565.88130297.204800.9289012.7172011.53560HepG2CELF1
EFHD2ENSG00000142634.8511.53880402.267400.346602.783301.94710HepG2DDX19B
EFHD2ENSG00000142634.8410.87170273.957600.584602.415201.68750HepG2DDX55
EFHD2ENSG00000142634.8507.33950327.466300.631503.047202.40120HepG2DDX6
EFHD2ENSG00000142634.8407.68980164.126801.3126014.2874012.92100HepG2DNAJC2
EFHD2ENSG00000142634.8491.84350662.33510-0.429403.940303.24410HepG2ETF1
EFHD2ENSG00000142634.8602.57030425.016500.503502.685101.86180HepG2EWSR1
EFHD2ENSG00000142634.8927.20930518.867100.837407.482106.28010HepG2FIP1L1
EFHD2ENSG00000142634.8259.99550467.72640-0.847202.918101.87360HepG2FTO
EFHD2ENSG00000142634.8195.78730331.88560-0.761405.328304.24690HepG2FUBP3
EFHD2ENSG00000142634.8176.23550325.46470-0.885003.598202.84360HepG2G3BP1
EFHD2ENSG00000142634.8331.90560212.431300.643703.460902.31420HepG2GNB2L1
EFHD2ENSG00000142634.8392.12240529.21530-0.432602.220801.64370HepG2GPKOW
EFHD2ENSG00000142634.8385.21350293.691300.391302.252501.40050HepG2HNRNPA2B1
EFHD2ENSG00000142634.8426.47410291.099300.550804.930204.05020HepG2HNRNPL
EFHD2ENSG00000142634.8359.66890505.04390-0.489702.862602.22330HepG2HNRNPLL
EFHD2ENSG00000142634.8519.42780357.920600.537203.806302.71010HepG2HNRNPM
EFHD2ENSG00000142634.8293.47350184.692100.668004.506803.74920HepG2HNRNPU
EFHD2ENSG00000142634.8951.66390596.986700.672705.077503.93860HepG2LARP4
EFHD2ENSG00000142634.8320.91890208.138200.624603.483902.21070HepG2LARP7
EFHD2ENSG00000142634.8808.92610419.817400.9461012.1739010.59720HepG2MSI2
EFHD2ENSG00000142634.8306.18840515.17530-0.750603.990602.81690HepG2MTPAP
EFHD2ENSG00000142634.8487.91740361.319900.433301.884101.35520HepG2NCBP2
EFHD2ENSG00000142634.8618.03780316.880900.9637013.4180011.79550HepG2NOL12
EFHD2ENSG00000142634.8328.48040171.256000.939604.968203.07470HepG2NOLC1
EFHD2ENSG00000142634.8493.93020251.673700.972704.679603.23510HepG2NONO
EFHD2ENSG00000142634.8503.83520179.840701.4861010.169108.42960HepG2PABPC1
EFHD2ENSG00000142634.8376.94900164.728401.1942014.3334012.73050HepG2PPIL4
EFHD2ENSG00000142634.8216.84960364.69680-0.750006.495205.36560HepG2PRPF4
EFHD2ENSG00000142634.8518.69340350.048200.567204.958504.27090HepG2PTBP1
EFHD2ENSG00000142634.8559.96320302.491200.888309.422908.41230HepG2PUF60
EFHD2ENSG00000142634.8515.78460321.108500.683608.199207.29160HepG2PUM1
EFHD2ENSG00000142634.8566.80460320.873500.820703.636802.87310HepG2PUM2
EFHD2ENSG00000142634.8437.55760553.58230-0.339302.183901.70890HepG2RBM22
EFHD2ENSG00000142634.8369.59610203.810500.858605.265703.79520HepG2RCC2
EFHD2ENSG00000142634.8509.97930389.560300.388502.688502.15340HepG2NELFE
EFHD2ENSG00000142634.8347.24360539.01490-0.634404.831403.96200HepG2RPLP0
EFHD2ENSG00000142634.8363.49120229.240500.665004.354003.59980HepG2RPS19
EFHD2ENSG00000142634.8328.02470231.468300.502902.268801.53900HepG2RPS2
EFHD2ENSG00000142634.8291.10540197.716900.558002.084501.38930HepG2RPS3A
EFHD2ENSG00000142634.8412.34260236.284900.803205.587904.04330HepG2RPS5
EFHD2ENSG00000142634.8129.06730208.92840-0.694902.967802.15690HepG2RRP9
EFHD2ENSG00000142634.8387.74390164.469101.2372016.3155014.94380HepG2SAFB2
EFHD2ENSG00000142634.8421.50840290.043400.539204.531203.66770HepG2SLBP
EFHD2ENSG00000142634.8335.74150191.786500.807707.402006.42850HepG2SMN1
EFHD2ENSG00000142634.8425.09610209.672501.019606.774905.22260HepG2SMNDC1
EFHD2ENSG00000142634.8273.41110556.20030-1.024507.243005.97270HepG2SNRNP70
EFHD2ENSG00000142634.8495.40730625.23810-0.335802.777902.27530HepG2SRFBP1
EFHD2ENSG00000142634.8237.49270380.38870-0.679605.158604.56420HepG2SRSF1
EFHD2ENSG00000142634.8393.44830298.666900.397502.484401.88640HepG2SRSF5
EFHD2ENSG00000142634.8336.77390491.57770-0.545604.920504.03340HepG2SRSF7
EFHD2ENSG00000142634.8349.75730542.83240-0.634206.968406.22540HepG2SSB
EFHD2ENSG00000142634.8592.33790339.665800.8022011.2047010.09740HepG2SUCLG1
EFHD2ENSG00000142634.8495.70600350.261200.501003.292802.27180HepG2SUPT6H
EFHD2ENSG00000142634.8159.10880272.68680-0.777204.289403.47320HepG2SUPV3L1
EFHD2ENSG00000142634.8175.25320341.93200-0.964308.655007.75240HepG2TAF15
EFHD2ENSG00000142634.8260.69640415.49570-0.672502.438501.43380HepG2TBRG4
EFHD2ENSG00000142634.8337.85620179.416300.913006.317105.61750HepG2TIAL1
EFHD2ENSG00000142634.8381.25830181.070101.074107.608206.75020HepG2TRIM56
EFHD2ENSG00000142634.8404.25340295.522300.451902.589101.74670HepG2TUFM
EFHD2ENSG00000142634.8247.79900443.78890-0.840706.748605.77940HepG2U2AF1
EFHD2ENSG00000142634.8663.48590312.806501.0847010.340408.68620HepG2UBE2L3
EFHD2ENSG00000142634.8226.47010359.88420-0.668205.510704.61360HepG2ZC3H8
EFHD2ENSG00000142634.8640.91980497.431300.365503.451202.85930HepG2ZNF622
EFHD2ENSG00000142634.8916.12550562.194500.7044011.1906010.14360K562AGGF1
EFHD2ENSG00000142634.8827.34110617.769800.421303.349202.24550K562AKAP8
EFHD2ENSG00000142634.8608.776201021.97780-0.747403.348602.71530K562AQR
EFHD2ENSG00000142634.8772.80190613.796300.332202.765101.85190K562ATP5C1
EFHD2ENSG00000142634.8346.46840544.93830-0.653403.155702.22270K562BOP1
EFHD2ENSG00000142634.81302.27460965.625700.431405.292703.72810K562CPEB4
EFHD2ENSG00000142634.81017.900601472.63220-0.532807.535305.95200K562CELF1
EFHD2ENSG00000142634.8321.98720446.44590-0.471503.509801.46120K562DDX24
EFHD2ENSG00000142634.8848.32560629.486100.430304.482003.33020K562DKC1
EFHD2ENSG00000142634.8522.26240353.129700.564502.584301.70520K562EFTUD2
EFHD2ENSG00000142634.81306.91420768.566200.7658015.1083013.63030K562EIF2S2
EFHD2ENSG00000142634.8985.508701197.45130-0.281002.924601.95940K562EIF4G2
EFHD2ENSG00000142634.8238.82470384.21550-0.686005.294203.39810K562EWSR1
EFHD2ENSG00000142634.8153.69430236.25200-0.620303.198501.74540K562FUS
EFHD2ENSG00000142634.8672.38690457.766000.554605.212104.41880K562FXR1
EFHD2ENSG00000142634.864.17240153.01860-1.253705.827604.71590K562G3BP2
EFHD2ENSG00000142634.8549.54770354.055200.634203.361601.77210K562GEMIN5
EFHD2ENSG00000142634.8597.54410905.78520-0.600107.672805.84610K562GLRX3
EFHD2ENSG00000142634.8325.44260515.15200-0.662602.916002.30570K562HNRNPC
EFHD2ENSG00000142634.8570.52370867.23970-0.604102.922701.46160K562ILF2
EFHD2ENSG00000142634.8299.18560480.45280-0.683404.924002.94870K562ILF3
EFHD2ENSG00000142634.8626.05300345.088900.859209.886108.23360K562MAGOH
EFHD2ENSG00000142634.8951.45970695.472900.452004.277803.10500K562MBNL1
EFHD2ENSG00000142634.8695.22330952.32470-0.454005.496304.37970K562MTPAP
EFHD2ENSG00000142634.8585.39040348.400000.748603.601602.08090K562NONO
EFHD2ENSG00000142634.8807.108901058.06430-0.390605.341304.35320K562NSUN2
EFHD2ENSG00000142634.8638.65600343.640600.894008.151806.86130K562PRPF8
EFHD2ENSG00000142634.8787.53900335.280401.2319022.5610020.73460K562PTBP1
EFHD2ENSG00000142634.81633.722601361.561100.262802.215101.35450K562PUM2
EFHD2ENSG00000142634.8613.56520321.457800.9325010.878009.04970K562RBM22
EFHD2ENSG00000142634.8635.96590421.761300.592403.510802.39700K562RCC2
EFHD2ENSG00000142634.8512.31320349.902500.550002.673601.87360K562RPS19
EFHD2ENSG00000142634.8396.19700205.096300.949805.156303.72880K562RPS3
EFHD2ENSG00000142634.8231.51440158.965800.542302.677401.83730K562SF3B4
EFHD2ENSG00000142634.8634.29720328.694000.9483011.6821010.23610K562SRSF1
EFHD2ENSG00000142634.8290.19960197.919800.552002.268101.33280K562SRSF4
EFHD2ENSG00000142634.8188.20150275.64800-0.550502.894701.58150K562SSB
EFHD2ENSG00000142634.8648.21460862.46590-0.412002.902201.50470K562SSRP1
EFHD2ENSG00000142634.8445.08160788.82020-0.825608.266006.04390K562STAU1
EFHD2ENSG00000142634.879.06140150.19350-0.925803.076701.50750K562TAF15
EFHD2ENSG00000142634.8622.92030332.643800.905006.339305.22830K562TARDBP
EFHD2ENSG00000142634.8488.63770320.876700.606604.929903.78960K562TIA1
EFHD2ENSG00000142634.8581.89640959.96080-0.722209.389507.73530K562WDR3
EFHD2ENSG00000142634.8757.66620998.29580-0.397905.027203.91740K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for EFHD2 is not available on ENCORE database.





12 RBPs can affect the splicing of EFHD2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEEFHD2ENSG00000142634.8chr1+157536451575378015752366157525141575508815756839-0.356000.000000.00001excludedK562SRSF1
SEEFHD2ENSG00000142634.8chr1+157536451575378015752366157525141575508815756839-0.244000.000070.00446excludedK562PRPF8
SEEFHD2ENSG00000142634.8chr1+1575364515753780157523661575251415755088157568390.155000.000090.05283includedK562SMNDC1
SEEFHD2ENSG00000142634.8chr1+157536451575378015752366157525141575508815756839-0.353000.000000.00000excludedHepG2U2AF1
SEEFHD2ENSG00000142634.8chr1+1575364515753780157523661575251415755088157568390.138000.000340.03474includedHepG2QKI
SEEFHD2ENSG00000142634.8chr1+157536451575378015752366157525141575508815756839-0.200000.000360.01763excludedK562FXR1
SEEFHD2ENSG00000142634.8chr1+157536451575378015752366157525141575508815756839-0.517000.000000.00000excludedHepG2SRSF7
SEEFHD2ENSG00000142634.8chr1+157536451575378015752366157525141575508815756839-0.277000.000500.08986excludedHepG2UCHL5
SEEFHD2ENSG00000142634.8chr1+157536451575378015752366157525141575508815756839-0.235000.000000.00020excludedHepG2SF3A3
SEEFHD2ENSG00000142634.8chr1+157536451575378015752366157525141575508815756839-0.277000.000020.00189excludedHepG2PCBP1
SEEFHD2ENSG00000142634.8chr1+157536451575378015752366157525141575508815756839-0.258000.000750.09793excludedK562SRSF7
SEEFHD2ENSG00000142634.8chr1+157536451575378015752366157525141575508815756839-0.146000.000990.03737excludedK562HNRNPU
SEEFHD2ENSG00000142634.8chr1+157536451575378015752366157525141575508815756839-0.325000.000000.00000excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for EFHD2 is not avaliable on ENCORE database.