CPNE3

General Information

Gene Name       : CPNE3
Gene ID             : ENSG00000085719.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CPNE3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CPNE3ENSG00000085719.1261.7548.8355.29ENCSR000AEF
HepG2CPNE3ENSG00000085719.1218.0535.0326.54ENCSR985KAT
K562CPNE3ENSG00000085719.1215.9219.2617.59ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CPNE3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CPNE3 RNA is bound by 12 proteins.  







eCLIP assay for CPNE3 is not avaliable on ENCORE database.





12 proteins are bound to CPNE3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr88757097287570994+3'-UTR6.4836918.39434HepG2SUB1
chr88757339887573484+3'-UTR3.425397.65557K562FAM120A
chr88757087787570986+3'-UTR3.708804.13343HepG2FUBP3
chr88757065187570743+3'-UTR4.243174.77152K562IGF2BP1
chr88757076887570863+3'-UTR3.814656.49446K562IGF2BP1
chr88757311687573182+3'-UTR4.024113.98716K562IGF2BP1
chr88757093887570972+3'-UTR5.9339312.21991HepG2SUB1
chr88757261187572701+3'-UTR4.647094.84422HepG2IGF2BP1
chr88757093887571048+3'-UTR5.1875410.26613K562NOLC1
chr88757099487571035+3'-UTR5.8480021.15365HepG2SUB1
chr88757192587571994+3'-UTR3.748573.88742K562FAM120A
chr88757345887573560+3'-UTR5.487386.23813HepG2SUB1
chr88752675487526817+5'-UTR,intron-Distal,intron-Proximal3.217796.29405HepG2PRPF8
chr88752676787526781+5'-UTR,intron-Distal,intron-Proximal4.527313.11721K562AQR
chr88752678187526822+5'-UTR,intron-Distal,intron-Proximal4.768383.62536K562AQR
chr88754338287543455+CDS,intron-Proximal4.059433.35081HepG2G3BP1
chr88754340987543459+CDS,intron-Proximal3.630113.87469HepG2BCLAF1
chr88754475587544812+CDS,intron-Proximal3.665304.46864HepG2BCLAF1
chr88754080887540838+CDS4.275904.55095K562YBX3
chr88755993887559972+CDS,intron-Proximal3.906383.02457HepG2BCLAF1
chr88756842087568520+CDS3.592715.12820K562LIN28B
chr88754609887546160+intron-Distal4.905237.64200HepG2PTBP1
chr88754609987546164+intron-Distal3.478645.09606K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CPNE3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CPNE3 is not available on ENCORE database.

  • 109 RBPs can affect the levels of CPNE3.  








The Knockdown/knockout RNA-Seq assay for CPNE3 is not available on ENCORE database.





109 RBPs can affect the gene expression of CPNE3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CPNE3ENSG00000085719.71400.816301685.04050-0.266502.243501.54510HepG2AKAP8L
CPNE3ENSG00000085719.72123.198802794.89130-0.396602.157301.46030HepG2ASCC1
CPNE3ENSG00000085719.71047.855501650.40680-0.655405.453104.12300HepG2BCCIP
CPNE3ENSG00000085719.7842.156001586.58230-0.9138015.0848013.84350HepG2BOP1
CPNE3ENSG00000085719.72016.284902655.29750-0.397202.286101.57870HepG2CIRBP
CPNE3ENSG00000085719.71320.614401676.82190-0.344505.634204.74670HepG2CKAP4
CPNE3ENSG00000085719.71069.803101456.58430-0.445203.796303.00340HepG2CPSF6
CPNE3ENSG00000085719.71212.565301550.86290-0.355002.826401.70970HepG2CPSF7
CPNE3ENSG00000085719.71439.365701707.20790-0.246202.382501.44170HepG2YBX3
CPNE3ENSG00000085719.71909.678102350.32230-0.299503.884803.03010HepG2DAZAP1
CPNE3ENSG00000085719.72024.844201551.087900.384407.395906.14390HepG2DDX19B
CPNE3ENSG00000085719.7635.487601602.54830-1.3344020.1228018.49990HepG2DDX21
CPNE3ENSG00000085719.71893.275501567.443000.272402.236301.42500HepG2DDX24
CPNE3ENSG00000085719.71457.588502779.01660-0.931008.138207.13020HepG2DDX6
CPNE3ENSG00000085719.7879.794801676.44580-0.9302022.3324020.54710HepG2DNAJC21
CPNE3ENSG00000085719.71025.485301661.50330-0.6962019.9793018.37850HepG2DNAJC2
CPNE3ENSG00000085719.7855.574301251.37650-0.548605.091003.58730HepG2EFTUD2
CPNE3ENSG00000085719.71536.231802672.18260-0.798605.436104.62200HepG2EIF2S1
CPNE3ENSG00000085719.71109.596601428.49090-0.364503.087401.84760HepG2EIF2S2
CPNE3ENSG00000085719.71314.172802874.94140-1.1294010.410509.12080HepG2EIF4B
CPNE3ENSG00000085719.71578.623902764.16920-0.8082025.4696023.96180HepG2ETF1
CPNE3ENSG00000085719.7779.132001088.90690-0.482905.275703.63380HepG2FAM120A
CPNE3ENSG00000085719.72022.406002978.89900-0.558703.766002.96870HepG2FXR1
CPNE3ENSG00000085719.71658.997802763.86340-0.736405.480204.55720HepG2G3BP1
CPNE3ENSG00000085719.7741.875201084.93960-0.548404.979003.77650HepG2GEMIN5
CPNE3ENSG00000085719.71077.217201601.18100-0.5718011.437609.64950HepG2HDGF
CPNE3ENSG00000085719.71226.167801692.50510-0.465004.217103.44200HepG2HNRNPA1
CPNE3ENSG00000085719.71855.950202159.81470-0.218702.652901.73610HepG2HNRNPA2B1
CPNE3ENSG00000085719.7694.125301004.28500-0.532903.585101.98960HepG2HNRNPAB
CPNE3ENSG00000085719.71511.514901882.55290-0.316702.628501.95120HepG2HNRNPC
CPNE3ENSG00000085719.71648.771202797.50000-0.762706.534105.49200HepG2HNRNPK
CPNE3ENSG00000085719.71449.381202141.08880-0.562908.950507.80520HepG2HNRNPL
CPNE3ENSG00000085719.71192.881301575.76100-0.401603.163602.49650HepG2HNRNPLL
CPNE3ENSG00000085719.71442.824501870.11000-0.374206.005105.14110HepG2HNRNPU
CPNE3ENSG00000085719.71025.462102809.58380-1.4541013.9111012.52890HepG2IGF2BP2
CPNE3ENSG00000085719.71437.239102635.96000-0.875003.396802.30650HepG2IGF2BP3
CPNE3ENSG00000085719.71340.600701910.26330-0.5109012.8497011.39870HepG2ILF2
CPNE3ENSG00000085719.71926.151602753.68600-0.515603.967502.96900HepG2LARP4
CPNE3ENSG00000085719.72115.717002979.93480-0.494103.217102.51030HepG2MAGOH
CPNE3ENSG00000085719.71053.709402996.76700-1.5079015.3290013.93580HepG2MATR3
CPNE3ENSG00000085719.71852.300102330.55270-0.331402.930702.14580HepG2NOL12
CPNE3ENSG00000085719.71457.254802732.36830-0.906906.910105.77630HepG2PABPC4
CPNE3ENSG00000085719.71146.416601851.14640-0.6913016.6601014.89340HepG2PARN
CPNE3ENSG00000085719.7815.300802536.74460-1.6376090.5513088.04000HepG2PCBP1
CPNE3ENSG00000085719.7884.470702016.77780-1.1892013.9251011.87400HepG2PCBP2
CPNE3ENSG00000085719.71324.350401667.99670-0.332803.911903.05150HepG2PPIL4
CPNE3ENSG00000085719.71138.603301447.61330-0.346404.365503.41780HepG2PRPF4
CPNE3ENSG00000085719.71473.768502120.20360-0.524703.251001.93760HepG2PRPF6
CPNE3ENSG00000085719.71677.749802581.17150-0.6215016.3795015.26260HepG2PTBP1
CPNE3ENSG00000085719.71784.170002361.37940-0.404407.264806.39820HepG2PUM1
CPNE3ENSG00000085719.71334.427901708.19330-0.356205.593304.77340HepG2PUS1
CPNE3ENSG00000085719.72087.774702795.60250-0.421206.513905.61310HepG2QKI
CPNE3ENSG00000085719.7942.580601946.45760-1.046208.645207.44320HepG2RAVER1
CPNE3ENSG00000085719.71671.892502872.64670-0.7809025.1080023.80470HepG2NELFE
CPNE3ENSG00000085719.71842.419002675.38810-0.5381012.9240011.73750HepG2RECQL
CPNE3ENSG00000085719.71193.958501587.02390-0.410603.852703.06760HepG2RPLP0
CPNE3ENSG00000085719.7880.105201185.59670-0.429903.959003.23670HepG2RPS19
CPNE3ENSG00000085719.71381.759601840.73710-0.413802.312901.57820HepG2RPS2
CPNE3ENSG00000085719.71247.892101665.44280-0.416407.406706.42620HepG2SAFB2
CPNE3ENSG00000085719.7815.400601190.02690-0.545404.334403.16750HepG2SERBP1
CPNE3ENSG00000085719.71607.545202105.08640-0.389002.531401.88660HepG2SF3A3
CPNE3ENSG00000085719.71841.052502687.44210-0.5457013.1223011.98380HepG2SF3B4
CPNE3ENSG00000085719.71379.386501942.23350-0.4937012.1121010.91330HepG2SMN1
CPNE3ENSG00000085719.72246.976002609.47700-0.215802.670602.17500HepG2SRFBP1
CPNE3ENSG00000085719.71204.536501678.19110-0.478403.268602.17160HepG2SRSF3
CPNE3ENSG00000085719.71750.485502196.31000-0.327305.182704.36760HepG2SRSF5
CPNE3ENSG00000085719.71679.898802282.02970-0.441909.200608.29860HepG2SRSF9
CPNE3ENSG00000085719.71858.607702497.94700-0.426507.761906.80690HepG2SUCLG1
CPNE3ENSG00000085719.72169.522202521.17610-0.216702.299201.78020HepG2TAF15
CPNE3ENSG00000085719.7438.858001535.76750-1.8071046.8592044.58000HepG2TARDBP
CPNE3ENSG00000085719.71807.062602316.74890-0.358504.011503.01070HepG2TIA1
CPNE3ENSG00000085719.71201.803501817.33420-0.596609.820608.98120HepG2TIAL1
CPNE3ENSG00000085719.7916.807601833.39420-0.9998033.6726031.97670HepG2TRIM56
CPNE3ENSG00000085719.72369.887601626.515400.542906.520405.57160HepG2U2AF1
CPNE3ENSG00000085719.71522.413802300.07290-0.595306.094204.82290HepG2UBE2L3
CPNE3ENSG00000085719.7623.30650954.33320-0.614605.242604.19170HepG2UCHL5
CPNE3ENSG00000085719.71550.883601866.88870-0.267503.496902.72630HepG2UPF1
CPNE3ENSG00000085719.71028.550301479.46720-0.524502.731801.73360HepG2UPF2
CPNE3ENSG00000085719.7994.037001590.18240-0.677806.772305.65300HepG2XRN2
CPNE3ENSG00000085719.71622.559801428.614500.183601.892201.32240HepG2ZC3H8
CPNE3ENSG00000085719.71824.279102053.22170-0.170602.029201.54170HepG2ZNF622
CPNE3ENSG00000085719.71840.943101192.477100.6264013.8779012.71010K562AGGF1
CPNE3ENSG00000085719.71276.210701735.88230-0.443804.345203.64180K562AQR
CPNE3ENSG00000085719.71739.848901301.911900.418205.671204.30780K562ATP5C1
CPNE3ENSG00000085719.71864.512901425.090800.387602.712101.55080K562CCDC124
CPNE3ENSG00000085719.71960.267201399.101700.486405.099503.07750K562DDX19B
CPNE3ENSG00000085719.7778.199901083.45600-0.477403.415601.52070K562DDX51
CPNE3ENSG00000085719.71743.483401335.242500.384805.196403.94270K562DKC1
CPNE3ENSG00000085719.7680.942501038.35920-0.608704.139502.54200K562EEF2
CPNE3ENSG00000085719.7967.335901190.02670-0.298902.853502.12500K562EIF2S2
CPNE3ENSG00000085719.7903.688001158.20390-0.358003.626402.72290K562EIF3G
CPNE3ENSG00000085719.7973.305301261.81020-0.374504.075902.62470K562EIF4B
CPNE3ENSG00000085719.7939.714801180.71860-0.329402.403801.61390K562FIP1L1
CPNE3ENSG00000085719.71325.65320961.589900.463103.700602.36990K562FKBP4
CPNE3ENSG00000085719.71981.936801494.238100.407402.547901.87450K562G3BP2
CPNE3ENSG00000085719.7638.518601005.89930-0.655705.955203.86250K562GEMIN5
CPNE3ENSG00000085719.71122.802601585.85970-0.498205.725804.63410K562GRSF1
CPNE3ENSG00000085719.7905.674301107.55700-0.290302.040201.51690K562HNRNPC
CPNE3ENSG00000085719.7770.55700989.05810-0.360202.700101.57480K562HNRNPF
CPNE3ENSG00000085719.71198.877401600.82680-0.417103.854502.91840K562HSPD1
CPNE3ENSG00000085719.71140.298001794.49760-0.654206.252404.44450K562IGF2BP2
CPNE3ENSG00000085719.71417.154801825.61900-0.365402.544401.41500K562IGF2BP3
CPNE3ENSG00000085719.71983.020301316.838500.590506.096704.76250K562KIF1C
CPNE3ENSG00000085719.7824.548801123.33260-0.446103.490201.79720K562LIN28B
CPNE3ENSG00000085719.7872.792501883.17830-1.1095012.9608010.84960K562MATR3
CPNE3ENSG00000085719.72202.623001475.189400.578208.297306.55170K562MBNL1
CPNE3ENSG00000085719.7994.528301245.99110-0.325203.769202.83710K562MTPAP
CPNE3ENSG00000085719.71215.903301843.97230-0.600805.117103.22130K562PCBP1
CPNE3ENSG00000085719.7874.650601679.01170-0.940809.380207.55150K562PCBP2
CPNE3ENSG00000085719.7680.599601017.34070-0.579904.862903.76320K562PCBP3
CPNE3ENSG00000085719.7491.30600780.35030-0.667507.757806.44160K562POLR2G
CPNE3ENSG00000085719.71082.847301340.32540-0.307802.214301.48340K562PPIG
CPNE3ENSG00000085719.7626.77190993.04320-0.663906.666005.15970K562PSIP1
CPNE3ENSG00000085719.71433.934701833.14000-0.354302.526401.88800K562PTBP1
CPNE3ENSG00000085719.71730.217601230.588300.491504.946804.24720K562PUS1
CPNE3ENSG00000085719.71572.279501198.995100.390904.671303.92110K562RBM15
CPNE3ENSG00000085719.71170.739301850.17500-0.660204.488303.05900K562NELFE
CPNE3ENSG00000085719.71135.638901518.08880-0.418804.068301.92590K562RECQL
CPNE3ENSG00000085719.71315.57500994.628200.403402.886702.05110K562RPS19
CPNE3ENSG00000085719.7422.43050835.56970-0.984008.284705.81180K562SERBP1
CPNE3ENSG00000085719.71187.854801554.41170-0.388004.224203.16230K562SF3B4
CPNE3ENSG00000085719.7469.44960619.25860-0.399602.579801.36450K562SLBP
CPNE3ENSG00000085719.71338.463501796.98510-0.425002.907902.18620K562SRSF1
CPNE3ENSG00000085719.7621.91940812.05250-0.384802.781401.72550K562SRSF4
CPNE3ENSG00000085719.71025.797101696.86150-0.726106.323204.62670K562SRSF5
CPNE3ENSG00000085719.71301.585801721.12530-0.403103.406702.16810K562TRA2A
CPNE3ENSG00000085719.71110.744701449.15230-0.383702.543901.50160K562U2AF1
CPNE3ENSG00000085719.7686.951701306.15600-0.9270026.3059024.13880K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CPNE3 is not available on ENCORE database.





8 RBPs can affect the splicing of CPNE3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECPNE3ENSG00000085719.7chr8+8753710487537225875276898752772787540763875409050.234000.000180.01632includedHepG2AKAP1
SECPNE3ENSG00000085719.7chr8+875411728754135287540763875409058754338287543457-0.134000.000020.00088excludedK562U2AF1
SECPNE3ENSG00000085719.7chr8+875411728754135287540763875409058754338287543457-0.072000.001890.03335excludedK562U2AF2
SECPNE3ENSG00000085719.7chr8+8753710487537225875276898752772787540763875409050.386000.000110.00639includedHepG2HNRNPC
SECPNE3ENSG00000085719.7chr8+8753710487537225875276898752772787540763875409050.639000.000030.00088includedK562HNRNPC
A5SSCPNE3ENSG00000085719.7chr8+8752665587526889875266558752676987527689875277270.054000.000370.01682longerK562PUS1
RICPNE3ENSG00000085719.7chr8+8756327387563462875632738756332887563410875634620.064000.003580.02332includedK562PUS1
RICPNE3ENSG00000085719.7chr8+8756327387563462875632738756332887563410875634620.054000.004400.03946includedK562AKAP8L
RICPNE3ENSG00000085719.7chr8+8756327387563462875632738756332887563410875634620.105000.000270.00485includedK562UTP18
RICPNE3ENSG00000085719.7chr8+8756327387563462875632738756332887563410875634620.195000.000820.00564includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CPNE3 is not avaliable on ENCORE database.