CLN8

General Information

Gene Name       : CLN8
Gene ID             : ENSG00000182372.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CLN8)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CLN8ENSG00000182372.92.282.502.39ENCSR000AEF
HepG2CLN8ENSG00000182372.97.005.516.25ENCSR985KAT
K562CLN8ENSG00000182372.910.869.9510.40ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CLN8 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CLN8 RNA is bound by 9 proteins.  







eCLIP assay for CLN8 is not avaliable on ENCORE database.





9 proteins are bound to CLN8 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr817301221730181+3'-UTR4.5135711.95402K562TARDBP
chr817339211733998+3'-UTR3.666683.02936K562HNRNPU
chr817305161730603+3'-UTR4.394025.17229HepG2UPF1
chr817191961719325+5'-UTR,CDS3.305545.22400HepG2DDX3X
chr817119761712052+5'-UTR,intron-Distal,intron-Proximal4.399977.51958HepG2DDX3X
chr817197091719771+CDS,intron-Proximal4.560114.70436K562RBM15
chr817194361719507+CDS4.528255.40333K562RBM15
chr817195621719605+CDS3.151973.13141K562RBM15
chr817284001728461+CDS,intron-Proximal4.616374.45977HepG2U2AF2
chr817196321719683+CDS4.051153.28989K562RBM15
chr817192561719298+CDS4.002193.73331K562RBM15
chr817193271719372+CDS3.539794.46749K562RBM15
chr817219021721959+intron-Distal4.523023.18269HepG2XPO5
chr817218691721952+intron-Distal4.813683.22788K562XRCC6
chr817245021724554+intron-Distal4.348593.91671HepG2RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CLN8 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CLN8 is not available on ENCORE database.

  • 103 RBPs can affect the levels of CLN8.  








The Knockdown/knockout RNA-Seq assay for CLN8 is not available on ENCORE database.





103 RBPs can affect the gene expression of CLN8 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CLN8ENSG00000182372.6257.83730462.07020-0.841707.225405.58810HepG2AATF
CLN8ENSG00000182372.6762.825801065.31920-0.481903.118702.55800HepG2AKAP1
CLN8ENSG00000182372.61243.82250831.490700.580909.603308.45340HepG2AUH
CLN8ENSG00000182372.6567.90940408.929400.473702.715801.82410HepG2BCLAF1
CLN8ENSG00000182372.61334.67620366.804701.8633038.2579036.49830HepG2BOP1
CLN8ENSG00000182372.6494.49000355.944900.474203.416102.57000HepG2CALR
CLN8ENSG00000182372.61260.41080837.449700.589705.663304.58110HepG2CIRBP
CLN8ENSG00000182372.6519.81610339.731800.613505.672804.21590HepG2YBX3
CLN8ENSG00000182372.6397.09130290.696100.449902.459701.44360HepG2CSTF2
CLN8ENSG00000182372.6770.74960581.863400.405503.819603.08630HepG2CELF1
CLN8ENSG00000182372.6853.32730625.661200.447605.703204.69330HepG2DAZAP1
CLN8ENSG00000182372.6783.43930509.582700.620405.947804.99590HepG2DDX21
CLN8ENSG00000182372.6610.26210432.947100.495102.590901.34460HepG2DDX27
CLN8ENSG00000182372.61471.841601077.915500.449304.228202.64690HepG2DDX47
CLN8ENSG00000182372.6614.22190462.716100.408501.998701.33020HepG2DDX55
CLN8ENSG00000182372.6555.38080382.405300.538302.240301.36380HepG2DDX59
CLN8ENSG00000182372.6681.09680488.197500.480303.418902.30480HepG2DDX5
CLN8ENSG00000182372.61618.65610876.627000.8847010.241709.13420HepG2DDX6
CLN8ENSG00000182372.6488.15080321.760000.601204.556103.31230HepG2DHX30
CLN8ENSG00000182372.61439.18090842.722000.772008.957907.92970HepG2EIF2S1
CLN8ENSG00000182372.62318.01940931.306501.3155023.2734021.45720HepG2EIF4A3
CLN8ENSG00000182372.6796.91710591.278900.430503.061502.20650HepG2EIF4G2
CLN8ENSG00000182372.61640.02560954.715100.7805018.4164017.09360HepG2ETF1
CLN8ENSG00000182372.6895.94380709.600900.336302.471601.68120HepG2EWSR1
CLN8ENSG00000182372.6659.74860939.65040-0.510203.822103.01910HepG2FXR1
CLN8ENSG00000182372.6598.24210374.624900.675205.552004.59710HepG2HNRNPC
CLN8ENSG00000182372.6927.27730554.171100.7426012.6575011.27330HepG2HNRNPF
CLN8ENSG00000182372.6807.04060364.310701.1474015.0724013.76920HepG2HNRNPLL
CLN8ENSG00000182372.6320.32260431.10150-0.428502.547401.63390HepG2HNRNPM
CLN8ENSG00000182372.6855.039901199.31000-0.488103.177501.85270HepG2HSPD1
CLN8ENSG00000182372.61056.38800545.699100.9529016.9576015.34150HepG2IGF2BP1
CLN8ENSG00000182372.61220.11430886.026100.461503.597402.83730HepG2IGF2BP2
CLN8ENSG00000182372.6638.204201198.47080-0.909108.649306.48440HepG2KRR1
CLN8ENSG00000182372.61372.07770598.015501.1980015.3104013.39720HepG2LARP4
CLN8ENSG00000182372.6724.02000945.23920-0.384602.195801.63040HepG2MATR3
CLN8ENSG00000182372.6856.00120620.403600.464304.629203.64270HepG2NOL12
CLN8ENSG00000182372.6435.00170323.019500.429302.279001.59800HepG2NSUN2
CLN8ENSG00000182372.62737.04500956.354301.516905.025903.79960HepG2PABPC1
CLN8ENSG00000182372.61743.95050861.625301.0171015.3260013.67660HepG2PABPC4
CLN8ENSG00000182372.61045.53520890.709100.231102.016401.48530HepG2PCBP1
CLN8ENSG00000182372.6545.62830409.632600.413503.442002.58900HepG2PRPF4
CLN8ENSG00000182372.6728.44350906.36960-0.315302.967102.40420HepG2PTBP1
CLN8ENSG00000182372.61342.54290592.225301.1807021.6433020.18830HepG2PUF60
CLN8ENSG00000182372.6442.30350628.66830-0.507305.936805.13490HepG2PUM1
CLN8ENSG00000182372.61147.06210628.212200.8685014.8742013.39720HepG2PUM2
CLN8ENSG00000182372.6597.92440739.72540-0.307002.665702.05710HepG2PUS1
CLN8ENSG00000182372.61466.17340797.954200.8776010.345009.48560HepG2RBM22
CLN8ENSG00000182372.61157.88830890.838900.378203.389702.64940HepG2RBM25
CLN8ENSG00000182372.6721.160801008.66930-0.484105.797805.06050HepG2NELFE
CLN8ENSG00000182372.6655.38810939.49830-0.519506.483505.59670HepG2RECQL
CLN8ENSG00000182372.61821.05880596.996301.6089043.1252041.19990HepG2RPLP0
CLN8ENSG00000182372.61040.83500511.590201.024609.186807.56430HepG2RPS10
CLN8ENSG00000182372.6626.96390346.312300.856209.345308.29470HepG2RPS19
CLN8ENSG00000182372.6845.33820525.769000.685006.963505.73110HepG2RPS2
CLN8ENSG00000182372.6756.737901051.14530-0.474102.323901.58860HepG2RPS3A
CLN8ENSG00000182372.6489.70770353.093200.471802.387501.65120HepG2RRP9
CLN8ENSG00000182372.6573.44100331.420200.7909010.814409.67010HepG2SAFB2
CLN8ENSG00000182372.6476.39150347.523000.454902.353301.48320HepG2SERBP1
CLN8ENSG00000182372.6868.99910360.604801.2688020.3295018.61060HepG2SF3B1
CLN8ENSG00000182372.6753.73590567.841500.408504.396203.54190HepG2SLBP
CLN8ENSG00000182372.6561.54530386.500800.538805.676404.80760HepG2SMN1
CLN8ENSG00000182372.6952.04090531.416400.841107.292405.69040HepG2SMNDC1
CLN8ENSG00000182372.61726.43780901.240500.9377028.5395027.37100HepG2SRFBP1
CLN8ENSG00000182372.6795.43960984.91860-0.308302.735702.26460HepG2SRSF1
CLN8ENSG00000182372.6633.80980387.985800.707904.857103.49880HepG2SRSF3
CLN8ENSG00000182372.6992.61310584.730200.7634012.5121011.31220HepG2SRSF5
CLN8ENSG00000182372.61040.05040544.459000.9337020.5163018.94060HepG2SRSF7
CLN8ENSG00000182372.61391.27290801.308800.7959020.2129018.97260HepG2SRSF9
CLN8ENSG00000182372.61204.75070782.456400.6226011.3801010.47710HepG2SSB
CLN8ENSG00000182372.6848.664601195.16360-0.493903.786202.30330HepG2SSRP1
CLN8ENSG00000182372.6622.97160417.266800.578103.472402.09520HepG2STAU1
CLN8ENSG00000182372.6817.03550665.004500.296902.654902.04260HepG2SUCLG1
CLN8ENSG00000182372.6665.94160421.852600.658604.616703.41870HepG2SUPT6H
CLN8ENSG00000182372.6893.25510460.626100.955409.594508.46180HepG2SUPV3L1
CLN8ENSG00000182372.6577.05230355.047900.700605.944904.94020HepG2TARDBP
CLN8ENSG00000182372.6490.68160308.741200.668304.268203.06640HepG2TFIP11
CLN8ENSG00000182372.61063.39480813.443200.386503.592402.64440HepG2TIA1
CLN8ENSG00000182372.61135.73250361.645601.6509045.6529044.07990HepG2TIAL1
CLN8ENSG00000182372.6270.91620364.84240-0.429402.564602.01740HepG2TRIM56
CLN8ENSG00000182372.6740.53260578.570900.356002.434201.61820HepG2TUFM
CLN8ENSG00000182372.6719.51090534.547100.428602.429901.83790HepG2U2AF1
CLN8ENSG00000182372.61142.13190612.402800.899104.299703.24340HepG2UBE2L3
CLN8ENSG00000182372.6581.56850404.244200.524605.574104.67200HepG2ZC3H8
CLN8ENSG00000182372.61847.04150845.528001.1272050.1403048.55950HepG2ZNF622
CLN8ENSG00000182372.6571.35600359.217900.669405.775703.96020K562CIRBP
CLN8ENSG00000182372.6683.59570439.769300.636303.222602.06200K562CNOT7
CLN8ENSG00000182372.6362.32800271.560900.415902.148201.44840K562CPSF6
CLN8ENSG00000182372.6372.23570527.18450-0.502104.255503.39250K562EIF2S2
CLN8ENSG00000182372.6529.34600353.782500.581203.325202.18400K562EIF3D
CLN8ENSG00000182372.6412.70490309.132500.416802.363001.60270K562EIF4A3
CLN8ENSG00000182372.6395.50640278.400500.506403.536302.20470K562EIF4B
CLN8ENSG00000182372.6398.69210276.337200.528703.020102.12500K562FMR1
CLN8ENSG00000182372.6382.12740234.233900.706004.432303.25110K562FTO
CLN8ENSG00000182372.6432.42360321.486600.427602.904702.28710K562FXR1
CLN8ENSG00000182372.6162.76430244.23100-0.585502.350101.70620K562G3BP2
CLN8ENSG00000182372.6441.54400254.225300.796306.504605.62840K562HNRNPC
CLN8ENSG00000182372.6338.30240449.79390-0.411002.744101.85430K562HNRNPU
CLN8ENSG00000182372.6376.63680495.14410-0.394702.121501.42150K562HSPD1
CLN8ENSG00000182372.6392.08820221.409700.824404.805703.53570K562KRR1
CLN8ENSG00000182372.6453.99630351.511900.369002.154801.35090K562MATR3
CLN8ENSG00000182372.6432.81260308.673300.487603.269601.92330K562NCBP2
CLN8ENSG00000182372.6487.95990313.386900.638704.896303.58490K562PCBP2
CLN8ENSG00000182372.6709.92300535.610800.406402.331201.56780K562PCBP3
CLN8ENSG00000182372.6539.96170410.827900.394202.520401.75830K562POLR2G
CLN8ENSG00000182372.6501.83630342.245200.552104.495303.66870K562PTBP1
CLN8ENSG00000182372.6231.61190327.54220-0.500002.199901.47490K562RPS19
CLN8ENSG00000182372.6625.17700503.258300.312902.300601.55130K562SF3A3
CLN8ENSG00000182372.6374.98250246.612500.604503.159902.11860K562SF3B1
CLN8ENSG00000182372.6334.77200253.887900.398902.107201.36280K562SF3B4
CLN8ENSG00000182372.6729.67050515.602400.500905.831604.53890K562SRPK2
CLN8ENSG00000182372.6503.85770335.532100.586504.584603.67800K562SRSF1
CLN8ENSG00000182372.6423.82530316.928500.419202.253001.32430K562SRSF5
CLN8ENSG00000182372.6574.57900413.876600.473204.086502.64210K562SRSF7
CLN8ENSG00000182372.6465.26020311.287600.579703.296902.17980K562SUPV3L1
CLN8ENSG00000182372.6464.81310339.542200.453002.641401.94790K562TARDBP
CLN8ENSG00000182372.6440.37910327.536800.427002.571201.78520K562TIA1
CLN8ENSG00000182372.6354.25860244.445000.535203.427002.53550K562U2AF2
CLN8ENSG00000182372.6447.90470329.512200.442802.236701.32950K562UCHL5
CLN8ENSG00000182372.6593.89520481.171800.303602.396201.60420K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CLN8 is not available on ENCORE database.





1 RBPs can affect the splicing of CLN8 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECLN8ENSG00000182372.6chr8+1706414170647217039531704248170746217076770.250000.001080.09813includedK562FMR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CLN8 is not avaliable on ENCORE database.