CDC42BPG

General Information

Gene Name       : CDC42BPG
Gene ID             : ENSG00000171219.8
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CDC42BPG)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CDC42BPGENSG00000171219.80.020.310.17ENCSR000AEF
HepG2CDC42BPGENSG00000171219.81.810.391.10ENCSR985KAT
K562CDC42BPGENSG00000171219.83.291.212.25ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CDC42BPG is not avaliable on ENCORE database.



Proteins bound to RNA
  • CDC42BPG RNA is bound by 9 proteins.  







eCLIP assay for CDC42BPG is not avaliable on ENCORE database.





9 proteins are bound to CDC42BPG RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr116459107364591153-3'-UTR,intron-Distal4.655958.27548K562UPF1
chr116459118364591263-3'-UTR,intron-Distal4.473184.07810K562UPF1
chr116460613764606238-CDS,intron-Distal3.780873.66187K562ZNF622
chr116460020264600255-CDS,intron-Distal,intron-Proximal4.965975.90023K562SF3B4
chr116460099764601077-CDS,intron-Distal,intron-Proximal3.419623.88924K562PRPF8
chr116460251864602589-CDS,intron-Distal,intron-Proximal4.357464.38106HepG2PPIG
chr116460374964603829-CDS,intron-Distal,intron-Proximal4.930434.90235K562SF3B4
chr116460079664600889-CDS,intron-Distal,intron-Proximal5.159486.47067K562SF3B4
chr116460664764606701-CDS,intron-Distal4.314883.53690K562ZNF622
chr116460663564606681-CDS,intron-Distal3.778323.01428K562UCHL5
chr116460375664603860-CDS,intron-Distal,intron-Proximal5.759137.23906K562EFTUD2
chr116460265364602705-intron-Distal,intron-Proximal5.308094.24111K562EFTUD2
chr116460166964601738-intron-Distal,intron-Proximal5.331157.81430K562AQR
chr116459561464595762-intron-Distal4.081025.38546K562RBFOX2
chr116460608164606112-intron-Distal,intron-Proximal4.092934.98250K562AQR
chr116459560364595748-intron-Distal3.241533.27165HepG2RBFOX2
chr116459530364595406-intron-Distal,intron-Proximal3.114403.61689K562RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CDC42BPG is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CDC42BPG is not available on ENCORE database.

  • 102 RBPs can affect the levels of CDC42BPG.  








The Knockdown/knockout RNA-Seq assay for CDC42BPG is not available on ENCORE database.





102 RBPs can affect the gene expression of CDC42BPG :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CDC42BPGENSG00000171219.8562.41220225.984101.3153013.4858011.67220HepG2ABCF1
CDC42BPGENSG00000171219.8337.47890211.725800.672505.460204.66240HepG2ACO1
CDC42BPGENSG00000171219.8315.22190139.824001.172707.355606.53340HepG2AKAP1
CDC42BPGENSG00000171219.8321.28730143.968701.158008.554906.83150HepG2AKAP8
CDC42BPGENSG00000171219.8355.76450212.748400.741706.416705.29330HepG2AKAP8L
CDC42BPGENSG00000171219.8418.70160264.158500.664404.505503.66590HepG2AUH
CDC42BPGENSG00000171219.8250.39010146.362100.774503.229302.21700HepG2BCCIP
CDC42BPGENSG00000171219.81061.32970241.423802.1361054.4861052.51520HepG2BOP1
CDC42BPGENSG00000171219.8219.06330100.936501.117805.860304.79260HepG2CALR
CDC42BPGENSG00000171219.8347.13510224.139600.631002.999601.98250HepG2CCAR1
CDC42BPGENSG00000171219.8195.53350109.906700.831003.615602.74030HepG2CIRBP
CDC42BPGENSG00000171219.8470.47040211.713301.1519017.4370016.08010HepG2CKAP4
CDC42BPGENSG00000171219.8108.89470221.64700-1.025305.496504.55780HepG2CPSF6
CDC42BPGENSG00000171219.8264.6291090.399401.5495013.2766011.23370HepG2CSTF2
CDC42BPGENSG00000171219.8287.69520195.831400.554803.841102.87870HepG2DDX19B
CDC42BPGENSG00000171219.8522.45770120.420602.1171034.4039032.41890HepG2DDX21
CDC42BPGENSG00000171219.8467.22100133.909201.8028021.3618019.79330HepG2DDX3X
CDC42BPGENSG00000171219.8311.03250143.907101.111804.465903.50700HepG2DDX55
CDC42BPGENSG00000171219.8291.22910115.105301.339108.120607.11460HepG2DDX6
CDC42BPGENSG00000171219.8314.29740202.572900.633604.243403.43980HepG2DKC1
CDC42BPGENSG00000171219.8130.8313081.205500.688002.522701.84710HepG2DNAJC21
CDC42BPGENSG00000171219.8240.39070112.219601.099004.745103.56680HepG2EEF2
CDC42BPGENSG00000171219.8561.57280110.579502.3443037.1426035.13310HepG2EIF2S1
CDC42BPGENSG00000171219.8304.01760122.167601.315206.085905.14160HepG2EIF4A3
CDC42BPGENSG00000171219.8909.74600303.343401.5844040.8543039.05470HepG2ETF1
CDC42BPGENSG00000171219.8137.0388081.444400.750602.791101.61680HepG2FAM120A
CDC42BPGENSG00000171219.8456.03470228.203800.998707.590806.38050HepG2FIP1L1
CDC42BPGENSG00000171219.8227.56200105.344201.111003.740802.44700HepG2FUS
CDC42BPGENSG00000171219.8250.48470123.370301.021605.952704.96320HepG2FXR1
CDC42BPGENSG00000171219.8197.01910114.387100.784303.408802.67400HepG2G3BP1
CDC42BPGENSG00000171219.8153.8694081.081900.924202.472301.63090HepG2GEMIN5
CDC42BPGENSG00000171219.8224.92360120.213700.903704.260102.99340HepG2GNB2L1
CDC42BPGENSG00000171219.8463.62000251.272900.883603.265702.57550HepG2GPKOW
CDC42BPGENSG00000171219.8163.1715091.201000.839203.268902.52100HepG2HNRNPC
CDC42BPGENSG00000171219.8197.28200115.960300.766503.186602.43890HepG2HNRNPK
CDC42BPGENSG00000171219.8226.37150157.489900.523302.371201.48990HepG2HNRNPM
CDC42BPGENSG00000171219.8388.4847090.597402.1002035.8429033.88470HepG2HNRNPU
CDC42BPGENSG00000171219.8367.73260238.965500.621804.615503.70140HepG2IGF2BP1
CDC42BPGENSG00000171219.8267.36450116.251701.201504.689903.83130HepG2IGF2BP2
CDC42BPGENSG00000171219.8236.57670123.754400.934705.021403.35040HepG2KHDRBS1
CDC42BPGENSG00000171219.8613.10930236.902501.3718014.4794012.61900HepG2LARP4
CDC42BPGENSG00000171219.8223.64040123.413900.857604.108103.31130HepG2MAGOH
CDC42BPGENSG00000171219.8669.20460124.087002.4310039.0152036.85840HepG2MATR3
CDC42BPGENSG00000171219.8321.64640184.755200.799805.550404.44000HepG2MSI2
CDC42BPGENSG00000171219.8567.09740126.995602.1587018.5891017.04490HepG2NCBP2
CDC42BPGENSG00000171219.8276.39830132.157901.064404.597203.16590HepG2NONO
CDC42BPGENSG00000171219.8238.7345099.692801.259705.747104.29760HepG2PCBP2
CDC42BPGENSG00000171219.8410.50630110.998301.8868020.5069018.61410HepG2PRPF8
CDC42BPGENSG00000171219.8315.29440119.732201.3968015.4060014.31580HepG2PTBP1
CDC42BPGENSG00000171219.8677.94870149.124102.1846045.1390043.11830HepG2PUF60
CDC42BPGENSG00000171219.8286.22780215.661300.408302.154201.59400HepG2PUS1
CDC42BPGENSG00000171219.8831.61130253.527701.7137037.2212035.74520HepG2RBM22
CDC42BPGENSG00000171219.8303.77710133.228201.189008.090807.25280HepG2NELFE
CDC42BPGENSG00000171219.8218.90740124.124400.818404.251203.50910HepG2RECQL
CDC42BPGENSG00000171219.8829.24250261.399601.6654011.2162010.00130HepG2RPLP0
CDC42BPGENSG00000171219.8197.3859094.581001.061302.942801.97100HepG2RPS10
CDC42BPGENSG00000171219.8542.6884088.642102.6140048.4621046.48600HepG2RPS19
CDC42BPGENSG00000171219.8424.17600130.987001.6951018.9588017.01490HepG2RPS2
CDC42BPGENSG00000171219.8305.46140130.405101.227908.368607.00090HepG2RPS3A
CDC42BPGENSG00000171219.8260.66230109.798801.247207.519106.30050HepG2RRP9
CDC42BPGENSG00000171219.8325.16770197.959000.715903.721602.93540HepG2SF3A3
CDC42BPGENSG00000171219.8113.07070237.35810-1.069806.285405.25800HepG2SF3B1
CDC42BPGENSG00000171219.8357.69410124.608601.5212018.8152017.48960HepG2SF3B4
CDC42BPGENSG00000171219.8295.9722094.072201.6535020.0261018.53840HepG2SMN1
CDC42BPGENSG00000171219.8646.17080286.330301.1741020.1063019.07930HepG2SRFBP1
CDC42BPGENSG00000171219.8333.92600130.084001.3600014.7528013.84560HepG2SRSF1
CDC42BPGENSG00000171219.8537.57030147.282701.8678041.8141039.77860HepG2SRSF5
CDC42BPGENSG00000171219.8323.91200238.414300.442002.749102.05470HepG2SRSF7
CDC42BPGENSG00000171219.8574.03970248.567601.2074020.2667019.15610HepG2SSB
CDC42BPGENSG00000171219.8243.76780156.185200.642102.892401.58130HepG2SSRP1
CDC42BPGENSG00000171219.8178.17540113.476900.650802.556601.50460HepG2STIP1
CDC42BPGENSG00000171219.8517.38920167.463001.6273018.2409016.87010HepG2SUCLG1
CDC42BPGENSG00000171219.8469.55030143.253101.7126014.7935013.44340HepG2SUPV3L1
CDC42BPGENSG00000171219.8243.05850116.979101.055007.124106.29630HepG2TAF15
CDC42BPGENSG00000171219.8254.73540153.409200.731502.289401.31930HepG2TBRG4
CDC42BPGENSG00000171219.81013.8846087.997703.52620127.59650125.18720HepG2TIAL1
CDC42BPGENSG00000171219.8152.9529088.821400.784003.661203.03160HepG2TRIM56
CDC42BPGENSG00000171219.8270.44400145.748400.891802.383601.57720HepG2TUFM
CDC42BPGENSG00000171219.8288.81920195.248800.564802.745002.11840HepG2U2AF1
CDC42BPGENSG00000171219.8491.60160139.492501.817207.121205.46300HepG2U2AF2
CDC42BPGENSG00000171219.8345.37420154.312101.162203.494802.54970HepG2UBE2L3
CDC42BPGENSG00000171219.8435.46630175.560101.3105019.5915018.06100HepG2UPF1
CDC42BPGENSG00000171219.8248.97620180.446000.464302.293301.32600HepG2UTP18
CDC42BPGENSG00000171219.8111.76480169.49530-0.600802.296301.73950HepG2UTP3
CDC42BPGENSG00000171219.8242.83430105.789301.198704.282302.97650HepG2XRCC6
CDC42BPGENSG00000171219.8224.06810141.017100.668002.517901.82390HepG2XRN2
CDC42BPGENSG00000171219.8509.18120127.197202.0010042.4959040.52160HepG2ZC3H8
CDC42BPGENSG00000171219.8694.22570458.911700.597105.137504.23550K562AKAP8L
CDC42BPGENSG00000171219.8265.12920591.37760-1.1574012.2078011.10230K562AQR
CDC42BPGENSG00000171219.8341.75820228.904300.578104.082602.89830K562BCLAF1
CDC42BPGENSG00000171219.8268.24460173.657900.627202.564401.55340K562CSTF2
CDC42BPGENSG00000171219.8628.40010839.87600-0.418503.912902.74290K562CELF1
CDC42BPGENSG00000171219.8431.66210548.80810-0.346402.445001.82710K562DDX47
CDC42BPGENSG00000171219.8192.67570281.23430-0.545602.583201.75840K562FMR1
CDC42BPGENSG00000171219.8238.64320336.28800-0.494802.993302.36730K562FXR1
CDC42BPGENSG00000171219.855.35250133.89130-1.274305.442904.37540K562G3BP2
CDC42BPGENSG00000171219.8304.12540506.98820-0.737306.217705.07890K562GRSF1
CDC42BPGENSG00000171219.8319.33440496.00710-0.635302.452601.46480K562HNRNPL
CDC42BPGENSG00000171219.8330.92550211.052600.648802.406001.46830K562IGF2BP2
CDC42BPGENSG00000171219.8138.25180225.33420-0.704802.736501.80910K562KRR1
CDC42BPGENSG00000171219.8330.89600500.92270-0.598204.474403.46670K562MTPAP
CDC42BPGENSG00000171219.8398.47530745.08160-0.9029011.087109.44200K562PUF60
CDC42BPGENSG00000171219.8596.91510792.68540-0.409203.808902.53760K562PUM1
CDC42BPGENSG00000171219.8369.75170549.22340-0.570805.276604.17670K562SF3A3
CDC42BPGENSG00000171219.8206.48010139.095100.569802.680001.83980K562SF3B4
CDC42BPGENSG00000171219.8272.73670173.479800.652603.259202.10010K562SRSF4
CDC42BPGENSG00000171219.8302.96430199.447100.603003.389602.20720K562SRSF5
CDC42BPGENSG00000171219.8195.51430303.36290-0.633803.938202.95670K562SYNCRIP
CDC42BPGENSG00000171219.8313.68420206.092300.605903.650902.69150K562TIA1
CDC42BPGENSG00000171219.8481.50820590.08260-0.293401.946401.33660K562UPF1
CDC42BPGENSG00000171219.8395.25550525.09950-0.409802.110401.36380K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CDC42BPG is not available on ENCORE database.





3 RBPs can affect the splicing of CDC42BPG :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECDC42BPGENSG00000171219.8chr11-6461138764611555646092846460937664611881646120410.676000.000000.00016includedK562HNRNPL
A3SSCDC42BPGENSG00000171219.8chr11-6460066264600862646006626460080864601071646011310.123000.000750.08039longerK562RBM15
RICDC42BPGENSG00000171219.8chr11-6460912164609356646091216460920564609284646093560.136000.006500.03649includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CDC42BPG is not avaliable on ENCORE database.