CCDC88B

General Information

Gene Name       : CCDC88B
Gene ID             : ENSG00000168071.21
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCDC88B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCDC88BENSG00000168071.213.139.376.25ENCSR000AEF
HepG2CCDC88BENSG00000168071.216.622.304.46ENCSR985KAT
K562CCDC88BENSG00000168071.219.715.347.53ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC88B is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC88B RNA is bound by 11 proteins.  







eCLIP assay for CCDC88B is not avaliable on ENCORE database.





11 proteins are bound to CCDC88B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr116411962664119703+3'-UTR,CDS3.515063.95937K562UCHL5
chr116411888764118971+3'-UTR,CDS,intron-Proximal4.032207.33504K562SF3B4
chr116412057664120643+3'-UTR,CDS3.735516.66194K562DROSHA
chr116412480264124865+3'-UTR,CDS3.241363.32365K562RBFOX2
chr116412479964124850+3'-UTR,CDS5.264963.59041K562DROSHA
chr116412474464124799+3'-UTR,CDS5.723737.64819K562DROSHA
chr116411189764111967+5'-UTR,CDS4.483404.77252K562ZNF622
chr116411707164117211+5'-UTR,CDS,intron-Proximal3.436847.08969K562ZNF622
chr116411680964116841+5'-UTR,CDS3.946773.57722K562DDX24
chr116411188764111976+5'-UTR,CDS4.349598.58706K562UCHL5
chr116411250064112545+5'-UTR,CDS3.127683.39477K562BUD13
chr116411221364112276+5'-UTR,CDS4.105928.43090K562DDX24
chr116411221764112282+5'-UTR,CDS3.891105.42720K562UCHL5
chr116411713064117232+5'-UTR,CDS,intron-Proximal3.074845.19487K562PRPF8
chr116410907064109095+CDS,intron-Proximal4.946774.48364K562DDX24
chr116412150164121590+CDS,intron-Distal,intron-Proximal3.257838.13965K562RBFOX2
chr116410891564108967+CDS4.248653.87582K562ZNF622
chr116411104264111086+CDS4.481965.79396K562DDX24
chr116410893564108977+CDS,intron-Proximal5.468965.93845K562DDX24
chr116411101164111081+CDS3.436843.66187K562ZNF622
chr116412159064121657+CDS,intron-Distal,intron-Proximal5.110549.27533K562RBFOX2
chr116411141864111475+CDS,intron-Proximal4.493205.68247K562SF3B4
chr116412221264122276+intron-Distal5.335917.04291K562DDX6
chr116412177564121896+intron-Distal6.1448219.31555K562RBFOX2
chr116412241964122488+intron-Distal7.4946735.93445K562DROSHA
chr116411714864117244+intron-Distal,intron-Proximal3.159273.70975K562UCHL5
chr116412248864122555+intron-Distal8.5928745.78974K562DROSHA
chr116411849764118588+intron-Distal,intron-Proximal3.324757.36733K562DROSHA
chr116412195564122088+intron-Distal6.3418913.51721K562DDX6
chr116412243364122534+intron-Distal5.2848514.33398K562DDX6
chr116412220164122287+intron-Distal5.8234415.80128K562RBFOX2
chr116412194864122006+intron-Distal7.7087230.42018K562DROSHA
chr116412231164122416+intron-Distal6.2191320.19215K562RBFOX2
chr116412190364122041+intron-Distal6.8867329.27455K562RBFOX2
chr116412424564124310+intron-Distal5.840967.64819K562DROSHA
chr116412242964122605+intron-Distal,intron-Proximal7.0228138.66169K562RBFOX2
chr116411759264117744+intron-Distal3.3811212.52552K562RBFOX2
chr116411877764118857+intron-Distal,intron-Proximal3.128505.01235K562RBFOX2
chr116411851064118561+intron-Distal,intron-Proximal3.689486.25732K562DDX24
chr116411875564118933+intron-Distal,intron-Proximal4.2798317.61238K562DROSHA
chr116411849264118553+intron-Distal,intron-Proximal3.322633.51298K562AKAP8L
chr116412231164122419+intron-Distal8.1777472.48435K562DROSHA
chr116412204264122103+intron-Distal5.160379.10579K562RBFOX2
chr116411724564117319+intron-Distal,intron-Proximal3.986334.51666K562RBM15
chr116412219964122311+intron-Distal7.7012885.51493K562DROSHA
chr116411885764118943+intron-Proximal3.565037.04645K562RBFOX2
chr116411699264117015+intron-Proximal4.764963.59041K562DROSHA
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC88B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC88B is not available on ENCORE database.

  • 101 RBPs can affect the levels of CCDC88B.  








The Knockdown/knockout RNA-Seq assay for CCDC88B is not available on ENCORE database.





101 RBPs can affect the gene expression of CCDC88B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC88BENSG00000168071.17198.60940119.084200.737902.640202.12000HepG2AKAP1
CCDC88BENSG00000168071.1786.9495042.891401.019402.126901.30860HepG2BCCIP
CCDC88BENSG00000168071.1779.5246037.262501.093602.332501.50930HepG2BCLAF1
CCDC88BENSG00000168071.17118.3223063.853500.889803.605402.77940HepG2DAZAP1
CCDC88BENSG00000168071.17108.9537042.174701.369203.949703.04170HepG2DDX55
CCDC88BENSG00000168071.17206.8056098.017801.077105.390604.55460HepG2DDX6
CCDC88BENSG00000168071.1781.9807036.593701.163603.798202.98380HepG2DNAJC21
CCDC88BENSG00000168071.1774.2170036.280501.032503.194802.50230HepG2DNAJC2
CCDC88BENSG00000168071.17166.0877094.185900.818303.165102.53280HepG2EIF2S1
CCDC88BENSG00000168071.1751.97170101.36140-0.963702.460801.81030HepG2EIF4B
CCDC88BENSG00000168071.17139.8689060.349101.212605.719004.56860HepG2EIF4G2
CCDC88BENSG00000168071.1759.30270103.47140-0.803102.255801.45500HepG2G3BP2
CCDC88BENSG00000168071.17171.8280036.235202.245406.540805.58390HepG2GPKOW
CCDC88BENSG00000168071.17118.2788058.164001.023904.437403.59940HepG2HNRNPL
CCDC88BENSG00000168071.1777.2294040.825100.919602.573701.98920HepG2HNRNPU
CCDC88BENSG00000168071.17118.9751055.117001.110003.695502.27230HepG2HSPD1
CCDC88BENSG00000168071.1775.1350041.700900.849302.488701.78940HepG2ILF2
CCDC88BENSG00000168071.1769.7991034.999200.995802.399001.30530HepG2KHDRBS1
CCDC88BENSG00000168071.17103.5917055.084600.911102.514801.33410HepG2KRR1
CCDC88BENSG00000168071.1763.53960105.09590-0.726001.925301.37250HepG2MAGOH
CCDC88BENSG00000168071.1765.5754036.412200.848602.057201.41330HepG2PPIL4
CCDC88BENSG00000168071.17238.9838060.443301.9832018.6268017.26320HepG2PUF60
CCDC88BENSG00000168071.17102.8928064.117000.682301.946901.37800HepG2PUM2
CCDC88BENSG00000168071.1758.9044096.69130-0.715001.862101.39920HepG2NELFE
CCDC88BENSG00000168071.1799.2355036.354601.448606.231105.32370HepG2SAFB2
CCDC88BENSG00000168071.1775.0423041.471100.855502.151201.31760HepG2SMNDC1
CCDC88BENSG00000168071.1742.0925094.41420-1.165403.685503.15940HepG2SRSF1
CCDC88BENSG00000168071.17100.9759059.681000.758602.458701.86440HepG2SRSF5
CCDC88BENSG00000168071.1752.4395084.42180-0.687001.732501.30360HepG2SSB
CCDC88BENSG00000168071.17114.3342067.872000.752302.719302.10180HepG2SUCLG1
CCDC88BENSG00000168071.17112.8347039.656801.508506.920706.19550HepG2TIAL1
CCDC88BENSG00000168071.1797.8172040.024601.289105.488004.74540HepG2TRIM56
CCDC88BENSG00000168071.1723.4444048.46120-1.047602.012601.42570HepG2ZC3H8
CCDC88BENSG00000168071.1766.56780189.17300-1.506804.921003.28970K562AARS
CCDC88BENSG00000168071.17446.39480213.740101.0624010.040607.78570K562ABCF1
CCDC88BENSG00000168071.17598.53290420.102800.510601.981501.48550K562AGGF1
CCDC88BENSG00000168071.17809.96660461.684100.8109010.263608.06130K562AKAP8
CCDC88BENSG00000168071.171077.87990437.149401.3019016.2108014.38670K562AKAP8L
CCDC88BENSG00000168071.17666.64710387.398700.783004.390303.68290K562AQR
CCDC88BENSG00000168071.17416.43290217.778400.9351010.176908.32320K562BCLAF1
CCDC88BENSG00000168071.17325.29450148.900201.127308.641306.14070K562BUD13
CCDC88BENSG00000168071.17669.16750502.002300.414603.599402.22890K562CCDC124
CCDC88BENSG00000168071.17243.48480157.547000.627903.151501.77690K562CIRBP
CCDC88BENSG00000168071.17437.69690260.117400.750705.069703.04450K562CKAP4
CCDC88BENSG00000168071.17725.95610284.068001.3535011.517809.36420K562CNOT7
CCDC88BENSG00000168071.17277.59540146.253700.924406.460405.26180K562CPSF6
CCDC88BENSG00000168071.17329.62140179.009600.880704.107401.80480K562CPSF7
CCDC88BENSG00000168071.17334.99910165.217301.019704.218302.87800K562CSTF2
CCDC88BENSG00000168071.171164.41720618.452600.9128014.8875012.76720K562CELF1
CCDC88BENSG00000168071.17693.80070492.896600.493104.140802.32860K562DDX19B
CCDC88BENSG00000168071.17913.10010446.438901.0322019.1623016.10760K562DDX21
CCDC88BENSG00000168071.17508.60210296.607100.777905.962203.80570K562DDX6
CCDC88BENSG00000168071.17311.98090187.527500.734302.958501.57960K562DHX30
CCDC88BENSG00000168071.17412.57530156.269701.400508.752707.03740K562EFTUD2
CCDC88BENSG00000168071.17456.09150321.370900.505004.304702.77160K562EIF2S1
CCDC88BENSG00000168071.17365.97860275.266800.410802.598801.49290K562EIF4B
CCDC88BENSG00000168071.17829.60050502.899400.722009.564807.85430K562EIF4G2
CCDC88BENSG00000168071.17300.69620163.423600.879603.606101.70570K562ESF1
CCDC88BENSG00000168071.17457.62400330.929700.467503.111801.76380K562EXOSC5
CCDC88BENSG00000168071.17310.61760153.673601.015208.052506.52650K562FIP1L1
CCDC88BENSG00000168071.17313.64470126.159401.313803.401402.37930K562FTO
CCDC88BENSG00000168071.17109.99580317.86360-1.5310016.3951015.02970K562FXR1
CCDC88BENSG00000168071.1716.5722076.13640-2.199807.493406.21130K562G3BP2
CCDC88BENSG00000168071.17664.25710333.839500.9925015.3130012.98860K562GLRX3
CCDC88BENSG00000168071.17399.51410139.626701.5166017.0148014.97640K562GPKOW
CCDC88BENSG00000168071.17657.78940338.331700.959108.124206.81720K562GRSF1
CCDC88BENSG00000168071.17406.51560219.743800.887404.369301.87030K562HLTF
CCDC88BENSG00000168071.17424.03220254.891100.734203.311801.33140K562HNRNPA0
CCDC88BENSG00000168071.17633.50230361.900200.807706.824305.18680K562HNRNPA1
CCDC88BENSG00000168071.17417.90210206.749101.015209.106208.07430K562HNRNPC
CCDC88BENSG00000168071.17387.40630184.734801.068305.370403.70850K562HNRNPF
CCDC88BENSG00000168071.17538.08620400.770800.425003.140702.19220K562HNRNPU
CCDC88BENSG00000168071.17292.97570146.951800.995306.098304.32070K562IGF2BP2
CCDC88BENSG00000168071.17326.17740175.008700.898104.776802.83000K562ILF3
CCDC88BENSG00000168071.17298.34390169.041900.819504.354902.49380K562KHDRBS1
CCDC88BENSG00000168071.17847.44940463.877800.8693012.014809.89870K562KIF1C
CCDC88BENSG00000168071.17252.34380136.295300.888602.725501.85650K562METAP2
CCDC88BENSG00000168071.171061.94280536.024400.986203.826002.50200K562MSI2
CCDC88BENSG00000168071.17645.55480350.990000.8790013.2513011.64380K562MTPAP
CCDC88BENSG00000168071.171071.48880389.974001.4581050.1207047.64720K562NSUN2
CCDC88BENSG00000168071.17742.87900272.906501.4446013.0490010.41350K562PABPC1
CCDC88BENSG00000168071.17640.28190323.263600.985905.085903.63100K562PABPN1
CCDC88BENSG00000168071.17249.10630137.464300.857603.987202.80780K562PCBP2
CCDC88BENSG00000168071.17300.99900174.473500.786705.260604.07110K562PPIG
CCDC88BENSG00000168071.17415.95080548.68810-0.399602.022901.32450K562PUF60
CCDC88BENSG00000168071.17762.14130571.824200.414403.323302.27020K562PUM2
CCDC88BENSG00000168071.17640.75030433.436300.563804.128103.48450K562PUS1
CCDC88BENSG00000168071.17781.80050422.397900.8881014.0646012.72190K562RBM15
CCDC88BENSG00000168071.17153.31070287.67700-0.908006.063204.45600K562SAFB
CCDC88BENSG00000168071.17650.14880258.758901.3291011.357608.25600K562SBDS
CCDC88BENSG00000168071.17587.09880384.815900.609306.301205.10940K562SF3A3
CCDC88BENSG00000168071.17212.03400132.825000.674702.259101.39100K562SF3B1
CCDC88BENSG00000168071.17182.9783079.108501.209707.933806.44110K562SF3B4
CCDC88BENSG00000168071.17351.71820184.403300.931505.608703.79270K562SLBP
CCDC88BENSG00000168071.17295.32010151.985900.958203.345801.51580K562SRP68
CCDC88BENSG00000168071.17531.22260394.253200.430103.553502.50930K562SRPK2
CCDC88BENSG00000168071.17274.37300138.943800.981507.098605.30380K562SRSF5
CCDC88BENSG00000168071.17688.12550398.427700.7883010.752508.43230K562SRSF7
CCDC88BENSG00000168071.17773.24610253.247801.6103012.198609.00040K562STIP1
CCDC88BENSG00000168071.17346.46110147.060101.236207.324105.61500K562SUPV3L1
CCDC88BENSG00000168071.1786.51020323.85140-1.9044023.3501021.11380K562SYNCRIP
CCDC88BENSG00000168071.17276.88180148.920400.894605.492204.47770K562TARDBP
CCDC88BENSG00000168071.17305.89780143.647601.090407.588906.12940K562TIA1
CCDC88BENSG00000168071.17346.89510178.308400.960005.671204.28400K562TIAL1
CCDC88BENSG00000168071.17269.93890140.934100.937506.066204.30110K562TRA2A
CCDC88BENSG00000168071.17322.74120189.590500.767402.614901.70090K562TRIM56
CCDC88BENSG00000168071.17382.94070179.677301.091609.595806.91610K562TRIP6
CCDC88BENSG00000168071.17856.13480518.961200.722103.288901.89820K562TROVE2
CCDC88BENSG00000168071.17456.92240155.734201.5528012.076109.89050K562UCHL5
CCDC88BENSG00000168071.17539.20170413.498300.382802.607901.91060K562UPF1
CCDC88BENSG00000168071.17667.12400439.556300.601802.792501.48980K562UTP18
CCDC88BENSG00000168071.17986.96820353.816401.4799033.0000030.24660K562WDR3
CCDC88BENSG00000168071.17548.37010367.934700.575606.233005.01640K562WDR43
CCDC88BENSG00000168071.17809.74950459.325400.817904.728803.03400K562WRN
CCDC88BENSG00000168071.17343.54380158.721801.113905.108203.28020K562XRN2
CCDC88BENSG00000168071.171230.99200436.255401.4965013.3779011.33790K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC88B is not available on ENCORE database.





5 RBPs can affect the splicing of CCDC88B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RICCDC88BENSG00000168071.17chr11+6411863164119088641186316411872764118947641190880.472000.009330.05275includedK562PUS1
RICCDC88BENSG00000168071.17chr11+6411863164119088641186316411872764118947641190880.426000.003770.04111includedK562AGGF1
RICCDC88BENSG00000168071.17chr11+6411863164119088641186316411872764118947641190880.378000.004220.03812includedK562AKAP8L
RICCDC88BENSG00000168071.17chr11+6411863164119088641186316411872764118947641190880.479000.001660.01962includedK562RBM15
RICCDC88BENSG00000168071.17chr11+641205256412096864120525641207126412082264120968-0.197000.000190.02812excludedK562TROVE2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCDC88B is not avaliable on ENCORE database.