C1orf86

General Information

Gene Name       : C1orf86
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C1orf86)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C1orf86 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C1orf86 RNA is bound by 27 proteins.  







eCLIP assay for C1orf86 is not avaliable on ENCORE database.





27 proteins are bound to C1orf86 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr121209932121032-3'-UTR,intron-Distal,intron-Proximal4.282249.31557K562PABPC4
chr121211572121216-3'-UTR,5'-UTR,CDS,intron-Distal3.138813.44854HepG2LARP4
chr121236912123733-3'-UTR,intron-Distal3.636753.71156K562DGCR8
chr121210852121164-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.9987212.56006K562PABPC4
chr121237512123837-3'-UTR,intron-Distal3.291166.10287K562NONO
chr121236862123731-3'-UTR,intron-Distal3.168003.14365K562NONO
chr121211642121210-3'-UTR,5'-UTR,CDS,intron-Distal3.722596.22806K562PABPC4
chr121211232121221-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.470443.20743HepG2PPIG
chr121235692123648-3'-UTR,intron-Distal5.571988.39058K562DGCR8
chr121254352125501-5'-UTR,CDS,intron-Distal,intron-Proximal4.154626.94725K562DDX6
chr121254612125497-5'-UTR,CDS,intron-Distal5.1932416.66765K562PABPC4
chr121254342125461-5'-UTR,CDS,intron-Distal,intron-Proximal4.4924412.87873K562PABPC4
chr121254372125470-5'-UTR,CDS,intron-Distal,intron-Proximal3.509893.59112HepG2PPIG
chr121255002125582-5'-UTR,CDS,intron-Distal,intron-Proximal3.472487.73390K562DROSHA
chr121250972125132-5'-UTR,CDS,intron-Distal3.653706.67587HepG2DDX3X
chr121261032126196-5'-UTR,CDS,intron-Distal,intron-Proximal4.384428.71519K562GEMIN5
chr121255052125556-5'-UTR,CDS,intron-Distal,intron-Proximal4.419308.38381HepG2DDX55
chr121251822125293-5'-UTR,CDS,intron-Distal3.9543314.66843K562PCBP1
chr121255532125575-5'-UTR,CDS,intron-Distal,intron-Proximal4.5089511.79106HepG2DDX3X
chr121251782125287-5'-UTR,CDS,intron-Distal4.130133.07274HepG2SRSF9
chr121250472125117-5'-UTR,CDS,intron-Distal,intron-Proximal4.809486.01989HepG2PRPF8
chr121261252126130-5'-UTR,CDS,intron-Distal5.4737510.32974HepG2DDX3X
chr121250892125166-5'-UTR,CDS,intron-Distal3.542495.81815HepG2LARP4
chr121255582125604-5'-UTR,CDS,intron-Distal,intron-Proximal3.337897.04675HepG2PCBP2
chr121250672125143-5'-UTR,CDS,intron-Distal,intron-Proximal3.373955.54641HepG2PPIG
chr121255372125600-5'-UTR,CDS,intron-Distal,intron-Proximal4.016758.20904K562PCBP1
chr121251972125236-5'-UTR,CDS,intron-Distal3.439933.86355HepG2PPIG
chr121253212125350-5'-UTR,CDS,intron-Distal,intron-Proximal3.756554.61051HepG2DDX3X
chr121255032125595-5'-UTR,CDS,intron-Distal,intron-Proximal4.0000913.41676HepG2DDX59
chr121254902125600-5'-UTR,CDS,intron-Distal,intron-Proximal3.6597010.80024HepG2LARP4
chr121261302126194-5'-UTR,CDS,intron-Distal,intron-Proximal4.9274631.96545HepG2DDX3X
chr121253012125350-5'-UTR,CDS,intron-Distal,intron-Proximal4.002624.49052K562DDX6
chr121254582125553-5'-UTR,CDS,intron-Distal,intron-Proximal4.7443833.01257HepG2DDX3X
chr121254972125573-5'-UTR,CDS,intron-Distal,intron-Proximal4.3976344.89486K562PABPC4
chr121260722126221-5'-UTR,CDS,intron-Distal,intron-Proximal3.040943.07378K562DDX52
chr121254892125586-5'-UTR,CDS,intron-Distal,intron-Proximal3.6559212.60211K562DDX55
chr121254952125554-5'-UTR,CDS,intron-Distal,intron-Proximal4.2188914.55031K562DDX3X
chr121251862125289-5'-UTR,CDS,intron-Distal3.405799.22394K562PABPC4
chr121251032125161-5'-UTR,CDS,intron-Distal3.562005.99919HepG2DDX55
chr121254812125576-5'-UTR,CDS,intron-Distal,intron-Proximal3.6655111.12670K562DHX30
chr121261172126211-5'-UTR,CDS,intron-Distal,intron-Proximal4.212787.96984K562DHX30
chr121253162125349-5'-UTR,CDS,intron-Distal,intron-Proximal3.248805.03702K562DDX3X
chr121253012125349-5'-UTR,CDS,intron-Distal,intron-Proximal4.4607118.36769K562PABPC4
chr121254342125463-5'-UTR,CDS,intron-Distal,intron-Proximal3.349083.68137K562DDX3X
chr121256212125683-intron-Distal,intron-Proximal5.2834815.30086HepG2PCBP2
chr121221552122199-intron-Distal7.3633419.94191K562DGCR8
chr121213182121341-intron-Distal,intron-Proximal4.601564.40356K562DGCR8
chr121221962122299-intron-Distal4.965298.09947K562NONO
chr121258122125921-intron-Distal5.0245622.10367HepG2PCBP2
chr121222042122276-intron-Distal3.280173.12788HepG2DGCR8
chr121248322124880-intron-Distal5.8563129.81832HepG2XPO5
chr121256932125760-intron-Distal,intron-Proximal4.065296.45177K562HNRNPK
chr121223402122465-intron-Distal5.3872712.19055K562AKAP8L
chr121253602125405-intron-Distal,intron-Proximal3.936603.01266HepG2SF3B4
chr121257062125732-intron-Distal,intron-Proximal4.250503.94601K562PCBP1
chr121258162125886-intron-Distal6.6787922.46635HepG2DDX59
chr121259752126040-intron-Distal4.507269.90411HepG2HNRNPK
chr121255722125693-intron-Distal,intron-Proximal4.8315420.61740K562HNRNPK
chr121221442122155-intron-Distal7.1804817.31414K562DGCR8
chr121222192122246-intron-Distal5.684495.19464K562DROSHA
chr121213052121355-intron-Distal,intron-Proximal4.054193.19474K562LSM11
chr121258992125943-intron-Distal3.977543.87340HepG2CSTF2T
chr121257452125778-intron-Distal,intron-Proximal4.5465210.41145HepG2HNRNPK
chr121217412121792-intron-Distal4.916829.23338HepG2XPO5
chr121221502122176-intron-Distal5.264964.14061K562DROSHA
chr121212922121362-intron-Distal,intron-Proximal3.105413.13141K562RBM15
chr121223022122396-intron-Distal6.065918.75803K562DGCR8
chr121244392124482-intron-Distal,intron-Proximal4.083673.09880K562DROSHA
chr121213002121336-intron-Distal,intron-Proximal4.103993.05053K562DROSHA
chr121259722126036-intron-Distal4.491454.38582HepG2XRN2
chr121256282125694-intron-Distal,intron-Proximal5.6444929.11774HepG2DDX59
chr121221992122302-intron-Distal7.1735227.10330K562DGCR8
chr121248802124903-intron-Distal4.619353.70058HepG2XPO5
chr121257002125770-intron-Distal,intron-Proximal5.6741220.72778HepG2DDX59
chr121244212124483-intron-Distal,intron-Proximal3.309903.80158K562NONO
chr121258112125896-intron-Distal5.5173823.52786HepG2HNRNPK
chr121225232122578-intron-Distal4.507675.98323K562DROSHA
chr121223552122437-intron-Distal4.548487.87619K562DROSHA
chr121256882125767-intron-Distal,intron-Proximal6.2598316.36967HepG2PCBP2
chr121362222136342-intron-Distal4.989927.51888HepG2FAM120A
chr121256112125687-intron-Distal,intron-Proximal4.4983022.69819HepG2HNRNPK
chr121258062125908-intron-Distal4.5216810.12963K562HNRNPK
chr121221812122292-intron-Distal3.420284.48686HepG2DROSHA
chr121259482126028-intron-Distal4.5204111.70284HepG2DDX59
chr121223382122404-intron-Distal3.289903.48567K562SLTM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C1orf86 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C1orf86 is not available on ENCORE database.

  • 88 RBPs can affect the levels of C1orf86.  








The Knockdown/knockout RNA-Seq assay for C1orf86 is not available on ENCORE database.





88 RBPs can affect the gene expression of C1orf86 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C1orf86ENSG00000162585.12622.94740508.435300.292902.234001.67600HepG2ACO1
C1orf86ENSG00000162585.12351.39540211.441500.732703.692802.61170HepG2BCCIP
C1orf86ENSG00000162585.12669.56780272.246801.2982018.5618017.21560HepG2BOP1
C1orf86ENSG00000162585.12259.15290168.360600.622102.756101.40460HepG2DDX52
C1orf86ENSG00000162585.12735.99530286.594901.360607.243906.28480HepG2DDX6
C1orf86ENSG00000162585.12365.51810486.43360-0.412302.929902.23380HepG2DKC1
C1orf86ENSG00000162585.12220.25420140.989000.643503.879703.13430HepG2DNAJC2
C1orf86ENSG00000162585.12450.30690275.333600.709602.683802.10000HepG2EIF2S1
C1orf86ENSG00000162585.12236.31070387.36840-0.713005.217604.14880HepG2FUBP3
C1orf86ENSG00000162585.12471.67250284.813000.727703.800603.02450HepG2G3BP1
C1orf86ENSG00000162585.12342.06360193.112800.824704.740502.90680HepG2HNRNPA0
C1orf86ENSG00000162585.12323.96770238.847100.439702.646301.94410HepG2HNRNPF
C1orf86ENSG00000162585.12534.80830288.717300.889306.474205.43610HepG2HNRNPK
C1orf86ENSG00000162585.12356.98880255.185600.484203.556202.79900HepG2HNRNPL
C1orf86ENSG00000162585.12190.74280270.37080-0.503302.085601.53090HepG2HNRNPLL
C1orf86ENSG00000162585.12285.84750158.688800.848906.958506.03340HepG2HNRNPU
C1orf86ENSG00000162585.12308.82350235.197000.392802.009301.38520HepG2IGF2BP1
C1orf86ENSG00000162585.12621.55240308.960601.008405.914005.01800HepG2MATR3
C1orf86ENSG00000162585.12616.95300316.204000.964208.356107.28440HepG2NCBP2
C1orf86ENSG00000162585.12476.22770277.803300.777507.163505.94690HepG2NOL12
C1orf86ENSG00000162585.12347.62050190.910500.864503.695602.41760HepG2NONO
C1orf86ENSG00000162585.12266.59610141.538300.913407.079405.94160HepG2PPIL4
C1orf86ENSG00000162585.12484.52330281.536700.7831010.196909.20830HepG2PUM1
C1orf86ENSG00000162585.12351.73050517.87370-0.558105.620704.79800HepG2PUS1
C1orf86ENSG00000162585.12475.03840358.194400.407202.361401.77670HepG2QKI
C1orf86ENSG00000162585.12798.88610564.385500.501202.824202.30200HepG2RBM22
C1orf86ENSG00000162585.12377.49590223.202500.758004.588003.28940HepG2RBM27
C1orf86ENSG00000162585.12325.17440205.844400.659603.430702.54000HepG2RPS2
C1orf86ENSG00000162585.12329.65180229.269700.523802.228901.51110HepG2RPS3A
C1orf86ENSG00000162585.12281.39450141.321300.993508.722307.67420HepG2SAFB2
C1orf86ENSG00000162585.12326.79120215.891100.598002.850001.52140HepG2SART3
C1orf86ENSG00000162585.12658.61310344.347600.9355014.1159012.94010HepG2SF3B4
C1orf86ENSG00000162585.12367.64840254.316300.531604.203303.36380HepG2SLBP
C1orf86ENSG00000162585.12241.94600164.807600.553803.005002.33820HepG2SMN1
C1orf86ENSG00000162585.12300.13030184.699400.700303.616302.50800HepG2SMNDC1
C1orf86ENSG00000162585.12158.88750359.45200-1.177808.665107.93410HepG2SRSF1
C1orf86ENSG00000162585.12409.85510261.864500.646205.908205.04330HepG2SRSF5
C1orf86ENSG00000162585.12297.15870553.35660-0.897003.993603.40170HepG2SSB
C1orf86ENSG00000162585.12342.66900199.516500.780203.631102.35360HepG2STIP1
C1orf86ENSG00000162585.12403.44440297.796800.437903.385302.71070HepG2SUCLG1
C1orf86ENSG00000162585.12226.49810323.16600-0.512802.328301.80650HepG2TAF15
C1orf86ENSG00000162585.12440.82100155.573401.5025017.3423016.08960HepG2TRIM56
C1orf86ENSG00000162585.12377.08350259.113800.541203.472102.48130HepG2TUFM
C1orf86ENSG00000162585.12529.43280274.283800.948705.133503.97270HepG2UBE2L3
C1orf86ENSG00000162585.12273.84070122.250201.163408.720807.37040HepG2UCHL5
C1orf86ENSG00000162585.12577.83480404.309100.515105.254804.34130HepG2UPF1
C1orf86ENSG00000162585.12344.50980205.370000.746204.200102.84330HepG2XPO5
C1orf86ENSG00000162585.12961.15240633.718700.600808.895807.95340K562AGGF1
C1orf86ENSG00000162585.121133.55550659.417600.781502.524501.89990K562AKAP8L
C1orf86ENSG00000162585.121337.41620903.771300.565302.798401.55300K562APOBEC3C
C1orf86ENSG00000162585.121396.913501034.328200.433403.070702.45890K562AQR
C1orf86ENSG00000162585.121129.92490691.896500.7075012.063309.97790K562ATP5C1
C1orf86ENSG00000162585.12633.80990347.970200.865005.718204.32260K562BCLAF1
C1orf86ENSG00000162585.12437.37150285.891300.613303.843402.81550K562BOP1
C1orf86ENSG00000162585.12672.73560330.600801.024809.693307.38130K562CCAR1
C1orf86ENSG00000162585.121083.08460757.313700.516106.052704.28080K562CCDC124
C1orf86ENSG00000162585.12346.06900244.665700.500102.727301.45700K562CIRBP
C1orf86ENSG00000162585.12546.55360263.987501.049803.242902.08820K562CSTF2
C1orf86ENSG00000162585.12499.98920304.962300.713202.859601.51750K562DDX27
C1orf86ENSG00000162585.12660.30980451.317400.548903.934802.66260K562DDX3X
C1orf86ENSG00000162585.12644.65210356.612500.854108.160806.51960K562EFTUD2
C1orf86ENSG00000162585.12920.92600652.283600.497505.539204.57320K562EIF2S2
C1orf86ENSG00000162585.12580.99730424.592400.452403.827702.43550K562EIF4B
C1orf86ENSG00000162585.12702.82020465.888800.593105.212104.02350K562FIP1L1
C1orf86ENSG00000162585.1257.65540129.26430-1.164804.607603.64280K562G3BP2
C1orf86ENSG00000162585.12467.15430290.214800.686705.261804.17500K562GPKOW
C1orf86ENSG00000162585.121385.14170869.117600.672303.067102.27350K562GRSF1
C1orf86ENSG00000162585.12497.18180228.315201.122604.845903.32490K562IGF2BP2
C1orf86ENSG00000162585.12376.52180232.214400.697205.332903.57660K562IGF2BP3
C1orf86ENSG00000162585.12375.86760602.09810-0.679803.291101.71930K562ILF2
C1orf86ENSG00000162585.12451.75000239.917900.912909.214607.62340K562MAGOH
C1orf86ENSG00000162585.12894.22100669.885100.416603.452102.20850K562MAK16
C1orf86ENSG00000162585.12469.94140239.426200.972805.082703.78600K562MATR3
C1orf86ENSG00000162585.12441.20890283.285000.639104.738003.57350K562METAP2
C1orf86ENSG00000162585.12580.95690331.498700.809304.558701.86900K562PARN
C1orf86ENSG00000162585.12391.99230213.461600.876707.093405.50480K562PCBP2
C1orf86ENSG00000162585.12865.94460528.900700.711204.948103.80030K562PPIG
C1orf86ENSG00000162585.12484.37650347.028300.481002.515301.79990K562PRPF8
C1orf86ENSG00000162585.12496.52940233.097701.0908013.9512012.52100K562PTBP1
C1orf86ENSG00000162585.12975.08840637.182000.613708.235007.24150K562RBM15
C1orf86ENSG00000162585.12482.56100223.495101.1104012.7722010.77760K562RBM22
C1orf86ENSG00000162585.12417.95340217.878700.939706.997004.58780K562RBM34
C1orf86ENSG00000162585.12367.05370235.197000.642002.438401.42470K562NELFE
C1orf86ENSG00000162585.12342.22790208.360000.715803.261302.16490K562RPS3
C1orf86ENSG00000162585.12317.43950134.416301.2397012.9393011.00470K562SF3B4
C1orf86ENSG00000162585.12432.80290228.517100.921306.192805.14450K562SRSF1
C1orf86ENSG00000162585.12404.46940201.119601.007908.485406.50580K562SRSF4
C1orf86ENSG00000162585.12403.04070215.826200.901006.924305.15210K562SRSF5
C1orf86ENSG00000162585.12367.13100492.24520-0.423102.763201.94400K562SYNCRIP
C1orf86ENSG00000162585.12673.53230231.266301.5421024.7220022.16660K562TARDBP
C1orf86ENSG00000162585.12512.57830223.084601.2001015.6668013.59240K562TIA1
C1orf86ENSG00000162585.12414.53440218.930900.920907.841005.75610K562TRA2A
C1orf86ENSG00000162585.12486.71540355.519200.453102.342901.41480K562UCHL5
C1orf86ENSG00000162585.12565.56510362.150600.643004.619902.91050K562XRN2
C1orf86ENSG00000162585.12321.38610640.44040-0.994804.647202.33820K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C1orf86 is not available on ENCORE database.





15 RBPs can affect the splicing of C1orf86 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC1orf86ENSG00000162585.12chr1-212428321244142121151212122021250772125349-0.214000.000180.06408excludedK562IGF2BP2
SEC1orf86ENSG00000162585.12chr1-2125436212557221250772125349212944521313460.090000.000150.07028includedK562SMNDC1
SEC1orf86ENSG00000162585.12chr1-212428321244142121151212122021250772125349-0.171000.000030.00128excludedHepG2HNRNPK
SEC1orf86ENSG00000162585.12chr1-212428321244142121151212122021250772125349-0.165000.000050.00103excludedHepG2U2AF2
SEC1orf86ENSG00000162585.12chr1-212428321244142121151212122021250772125349-0.154000.000160.04556excludedK562METAP2
SEC1orf86ENSG00000162585.12chr1-212546621255722125077212534921261262126190-0.520000.002090.06879excludedK562FXR1
SEC1orf86ENSG00000162585.12chr1-2125436212557221250772125349212944521313460.100000.000000.00676includedK562DHX30
SEC1orf86ENSG00000162585.12chr1-2118276211864521159162116952212507721253490.469000.001990.09719includedHepG2FTO
SEC1orf86ENSG00000162585.12chr1-2118276211864521159162116952212507721253490.420000.000000.00018includedK562HNRNPL
SEC1orf86ENSG00000162585.12chr1-2124283212441421211512121220212507721253490.329000.000040.00187includedHepG2SRSF1
SEC1orf86ENSG00000162585.12chr1-212428321244142121151212122021250772125349-0.151000.001540.06684excludedHepG2PCBP1
SEC1orf86ENSG00000162585.12chr1-2125436212557221250772125349212944521313460.098000.000080.06536includedK562SLBP
SEC1orf86ENSG00000162585.12chr1-212408521244142121018212122021250772125349-0.253000.000010.00643excludedHepG2XRN2
A3SSC1orf86ENSG00000162585.12chr1-2124283212444121242832124414212507721253490.237000.000120.00101longerK562AQR
A5SSC1orf86ENSG00000162585.12chr1-2125436212557221254662125572212507721253490.073000.000030.01326longerK562DROSHA

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C1orf86 is not avaliable on ENCORE database.